Hnum025870.1
Basic Information
- Insect
- Heliconius numata
- Gene Symbol
- L
- Assembly
- GCA_016802625.1
- Location
- JAEBDU010000104.1:2260749-2272323[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.4e-06 0.00054 21.0 2.0 1 23 89 111 89 111 0.99 2 18 0.57 57 5.2 5.8 1 23 117 139 117 139 0.97 3 18 7.7e-06 0.00077 20.5 4.1 1 23 145 167 145 167 0.99 4 18 1.6e-05 0.0016 19.5 0.1 1 23 173 195 173 195 0.98 5 18 0.0019 0.19 13.0 0.1 2 23 211 233 210 233 0.94 6 18 5.4 5.5e+02 2.1 0.1 9 23 264 279 260 279 0.93 7 18 0.27 28 6.2 0.0 3 23 334 354 333 354 0.97 8 18 0.13 13 7.2 0.0 2 23 368 389 367 389 0.91 9 18 3.5e-05 0.0035 18.4 1.1 1 23 397 420 397 420 0.94 10 18 0.0058 0.58 11.4 0.1 1 23 425 448 425 448 0.93 11 18 0.0014 0.14 13.4 0.0 1 23 508 533 508 533 0.93 12 18 0.00091 0.091 14.0 0.0 2 23 587 608 586 608 0.96 13 18 0.47 47 5.4 0.0 1 23 616 638 616 638 0.95 14 18 6.9 6.9e+02 1.8 0.7 2 23 646 667 645 668 0.90 15 18 8.7 8.8e+02 1.4 0.0 3 23 675 695 674 695 0.93 16 18 0.42 42 5.6 0.6 1 23 742 764 742 764 0.94 17 18 0.0079 0.79 11.0 0.1 1 20 772 791 772 794 0.95 18 18 0.092 9.3 7.7 0.3 1 23 801 823 801 823 0.94
Sequence Information
- Coding Sequence
- ATGATAATGCTATTCAAAGGCAATAGCAGCAGATTAGAACATCTCATAGAAAAGATACAAGCCAATAAGGAAAACCACGACGTGACCCCAGAGGATTTAAAACAAGCACTGGGTAGTGTGGGCAGTACGGCGGGCAGCTCTTGGCCGTCGTCGACACCGGAGCCATCTCCGTCACCATCCTCTACGCCAACCTCAGCTGATGCAGTCGACGCTGACGCAGATGCCGAGCCTCCTTTTACTCTCGGTGCTACTGAACATACGCCTTACAAATGCCAATTCTGTGAAAAAGCTTTCCCAAGACTTTCATACCTTAAGAAACATGAGCAGACACATTCCGACCAAATGCCGTTTCGATGTGAGTTCTGTTCCCGTCTGTTCAAGCACAAAAGGTCCCGTGATCGCCACGTCAAGCTACATACTGGTGATAGAAAATACCGCTGTGCACATTGCGAATCTGCTTTCTCAAGAAGTGATCATTTGAAAATTCATATGAAAACTCATGACAATCAAAAGCCGTTCCAATGCACGGTATGCAACCGTGGATATAACACCGCTGCTGCACTGACAGCCCACATGCAGGGACACAAACGTGACCGGGAAGGACGTGAAACGGATCGGAAGAGAGCTCTGCGATGTTTGCGATGTGGTGATGCATTTCGACGGCCCGAAATGTTGCAAGCTCATATGGTCAGTGCTCATGGAGTAGATACGTCTGCAATGACACCACCACGTCGTGTAGCGTCGCAGCCACAGCCCACTTTACTCGCCTGTATTTATTGCACTCGGGATACTTTTACTAGCATGGAACAACTCCAATTGCATGTACGCGCTGCTCATTCAGCACTTCTAAACGGAGAGTCCCCTGTGCAACATAGTGAACAACCCGCGCCAACTGACCTTAGCAGACGAAGTCCAGGGGATGAGTCTCCTGCTAAAAGAGCAAGATTAAGCTCAGGTGCCTCAACACCAAAAACCACGCTATCTCCAAGTACTCTTTTATGCAATCAATGCGACGCAGCGTTGCCAGATTTTGAAGCCTTTCGCGCTCATTTAAAAGGTCACCTTGAAGAAGGCGGAGAATTAGCGAGATCCAGCCCTACACCTTGTCTCCATTGTGGAGCTACATTTGCAGATGCCGCAGCATCAGAACGACACCTTGCTGCACATTATTTGGCGGTGTCATGCGAATATACTTGTCACAGTTGCGTCCGCAGTTTCTCCTCTCCTGAAGATTTGCAAAAACATCTTCTCGATCTTCACGCTCATCATCTTTATCGCTGTACTTTATGTAAAGAAGTATTTGATTCAAAAGTGGCTATACAGGCGCATTTTGCGGTTGCTCATAATGGAGAAAACAAAGTGTGGGTGTGCCGGTCCTGCGGTGTGGCTGGAGGTGCTCTGCGCAGTGAGGCTGAAGGTGCAGCACACGTGCGGGCGCGGCACGCGGCGGCGCGCTGTGCTTGCGGCGCCGTGCTCGCAGGCGCGCGGGCGTTGCGAGCTCATACCGCCGCACATCACGCCTATCGATGTCCAGTACCACCTTGCACTGAGTCCTTCGCTGTTCAGTACTTATTAGAACGCCATATGCAAGTGAATCACACTATTCCACATCATGGCATAAATGGAGATGTGACAAGAGGAAAACGTACAGAGAACAATAACTCTCTTGAAAGTGAAGATGCATGTTCTCCATGTGTTCCGGACAACGGACAACCGGCTGTGGACGAACGTCGGCGTAAGAACGGCGCAGTGGCTCTACAGTGCGCTTATTGCGGTGAGCGGGCTCGAAGCAGAGCTGAGCTCGAGGCTCATACCAGAGCTCACTCTGGAACAGGCACTGCAAGACATAAGTGTCTTATTTGCGATGAAGTGCTACCATCTGCTGCCATCCTCGCAGAACATAAATTGACTCATTGCAAGGTGATAGCAGGAGATACGTGTGCAAGGTGCCGTTCTCGTCTTCCCTCCGAAGAAGCTTTCTTGAGTCACATGGCACGTCATCACCCCGCACTGCCTGCTCCCTGTGTTATATGCCGCCAAACATTAGCCTCAGAGGCGGAGGCACGATTACACGCTAGATTCCATCTACGACCAACAGAAGATGAGCAAAGATGCGCAATTTGTCTTAGAGCTTTAACTGAAAATGAAGCTGGCGAAGGGGCAAGGGCTTGTTCCTCTTGTTATGCACGACATGCAACGCCAAGGCCTCCAGTGACCACTGAACACGACTGCCGGCTCTGTCGCCGTACTCTGGGCTCTCCCACTCGCTTACAAGCGCATCTAATTGAACACACATTTGCTGGTATTGGAGCATTTACTTGCTACCTTTGCTCCGCAATGTTTACAAGTGCCGTTGGCTTACAGAGACATTTGCCAGAACATTCAGCAGCACCGAGACCATACGATTGTGGTAGATGTGGTCTTAAATTTTTCTTCCGCGCTGAGCTCGATAATCACGCATTTGTTCATCTAGAGGAAGCTGAAATAGCCCAGAGGGCATTTTATGAGGCGTACGCTAGAGGGGCTGCTTCAGCTTGGGCAGCTTTACAGCCTTCAGACTTAGTTCCTCAACCATTGGTTTCGACACCTGCGCCAACGGAAGTGCCAATAAAACAAGAACCAGAGATTAAAGAAGAACGCAATGATGAGTATATAGAAGTATCGTCTCCCCCTCCTGCGTCTGTACAATCTGAGAAAATGTCTCCCTCGCCAGTGGTGAAACAGGAGAAAAGTAATGAAGACTGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVTPEDLKQALGSVGSTAGSSWPSSTPEPSPSPSSTPTSADAVDADADAEPPFTLGATEHTPYKCQFCEKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTAHMQGHKRDREGRETDRKRALRCLRCGDAFRRPEMLQAHMVSAHGVDTSAMTPPRRVASQPQPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGESPVQHSEQPAPTDLSRRSPGDESPAKRARLSSGASTPKTTLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELARSSPTPCLHCGATFADAAASERHLAAHYLAVSCEYTCHSCVRSFSSPEDLQKHLLDLHAHHLYRCTLCKEVFDSKVAIQAHFAVAHNGENKVWVCRSCGVAGGALRSEAEGAAHVRARHAAARCACGAVLAGARALRAHTAAHHAYRCPVPPCTESFAVQYLLERHMQVNHTIPHHGINGDVTRGKRTENNNSLESEDACSPCVPDNGQPAVDERRRKNGAVALQCAYCGERARSRAELEAHTRAHSGTGTARHKCLICDEVLPSAAILAEHKLTHCKVIAGDTCARCRSRLPSEEAFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPTEDEQRCAICLRALTENEAGEGARACSSCYARHATPRPPVTTEHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAVGLQRHLPEHSAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALQPSDLVPQPLVSTPAPTEVPIKQEPEIKEERNDEYIEVSSPPPASVQSEKMSPSPVVKQEKSNED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842895;
- 90% Identity
- iTF_00778181;
- 80% Identity
- -