Cgly002341.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- L
- Assembly
- GCA_963855885.1
- Location
- OY979627.1:10455913-10480063[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7e-06 0.0001 23.2 2.4 1 23 100 122 100 122 0.99 2 15 1.2e-05 0.00074 20.5 4.1 1 23 156 178 156 178 0.99 3 15 1.7e-05 0.001 20.0 0.1 1 23 184 206 184 206 0.98 4 15 0.0016 0.1 13.7 0.3 2 23 223 245 222 245 0.94 5 15 8.6 5.3e+02 2.0 0.1 9 23 276 291 272 291 0.93 6 15 0.43 27 6.1 0.0 3 23 347 367 346 367 0.97 7 15 0.24 15 6.9 0.0 3 23 382 402 381 402 0.91 8 15 0.00018 0.011 16.8 1.1 1 23 410 433 410 433 0.91 9 15 0.0015 0.094 13.8 0.1 1 23 438 461 438 461 0.94 10 15 7.3e-05 0.0045 18.0 0.3 1 23 521 545 521 546 0.96 11 15 0.00028 0.017 16.1 0.1 2 23 604 625 603 625 0.96 12 15 0.083 5.1 8.4 0.0 1 23 633 655 633 655 0.97 13 15 0.66 41 5.5 0.6 1 23 759 781 759 781 0.94 14 15 0.0077 0.47 11.6 0.1 1 20 789 808 789 811 0.95 15 15 0.15 8.9 7.6 0.3 1 23 818 840 818 840 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTCAAAGGCAACAGCAGCCGGTTGGAGCATCTCATTGAGAAAATCCAGGCGAATAAGGAGAACCACGACGTGACCACAGAAGAAATAAAACAAGCGTTGGGCAGCGTGGGCAGCGTGGGCAGCGTGGGCAGCGTGGGCAGCACGGGCGGCAGCTCGTGGCCGTCGTCGACGCCCGAGGCGTCGCCGTCCCCGGCGTCCACGCCCACGTCGCACGACGCCGTGGACGCGGAAGCGGACGCGGACGCGGAGCCGCCGTTCACGCTGGGCGCCACGGAGCACACGCCCTACAAGTGCAAGTTCTGCGACAAGGCGTTCCCCCGGCTGTCCTATCTCAAGAAACATGAACAAACCCATTCAGACCAGATGCCGTTCCGTTGCGAGTTCTGCTCGCACCTGTTCAAGCACAAGAGGTCGCGCGACCGCCACGTCAAGCTGCACACCGGCGACCGCAAGTACCGCTGCGCACACTGCGAGTCTGCGTTCTCCAGGAGTGACCACCTGAAGATCCACATGAAGACGCACGACAACCAGAAGCCGTTCCAGTGCACGGTGTGCAACCGCGGCTACAGCACGGCGGCCGCGCTCACGTCGCACATGCAGGGCCACAAGCGCGAGCGCGAGGGCCGCGACGGCGCCGTCCGCAAGCGCGCGCTGCACTGCCTGCGCTGCGGGGACGCGTTCCGCAGACCTGATCTACTACAAGCTCACATGTCAAGCGCCCACGGCGTTGAAGCAACCTCAATGACACCTCCGCGTCGAGTCGCCTCGCAGCCGCCGACAGCTCTTCTCGCTTGCATTTACTGCACGAGGGATACCTTCACCTCCATGGAGCAGTTACAGCTGCACGTCCGAGCGGCGCATTCGGCGTTGTTGAACGGAGAAAGTTCCGCGCAGTACGCAGTCGATCAGCCCATGCCGACTGACCTTAGCAGGCGCAGTCCTGAAATATCTTCACCGGCTAAACGCGCTCGGGTGAACTCGGGTTCTATGACACCGAAAACGGCTCTTTCCCCGAACACTCTTCTATGTAACCAATGCGACGCAGCACTGCCAGACTTTGAAGCGTTTCGAGCCCATTTGAAAGGTCATTTGGAAGAGGGTGGAGAGTTGGGGAGGGGAAGCCCCGCGCCTTGCGTCCACTGCGGGGCGACGTTCGCTGACGCGGCGGCCTCCGAGCGACACCTGGCCGCGCACTACCTAGCCGTGTCCTGCGAGTACTCCTGCCACAACTGCGTACGCACCTTCCCCTCGCCTGAAGATTTGCAGAAACATTTGTTCGACATGCACGCTCATCACATGTACCAATGCAATATTTGCAAAGAAGTATTCGATTCTAAAGTAGCCATTCAGGCTCATTTCGCCATGGCTCATAGTGCTGAGAACAAAGTGTGGGTTTGTCGTTCCTGTGGCTCCGCCGGGGGCGCCCTGCGCAGCGAGGCGGAgggcgcggcgcacgtgcgcgcgcggcacgcggcggcgcgctgcgcGTGCGGCGCCGTGCTgtcgggcgcgcgcgcgctgcgggcGCACGCCGCCGCGCACCACTCCTACCGCTGCCCGGCTCCTACCTGCACTGAGTCCTTTGCCGTCCAGTATCTCCTGGAACGTCACATGCAAGCTCATCACGCAGTTACGCTCCCAGGCCTCAACGGTGATTTGCTACGAGTTAAGAGAACAGAAAACAAGAACGCAATTGAAGGTGACGGTGCCAGTTCCCCTTGCATCGGCGGCGATGGTAATGGGCCCATGGTGCCTCCGGGGGAGGAACGACGCAGGAAGAACGGCGCCGTGGCGCTGCAATGCGCGTACTGCGGCGAGCGCACGCGCAGCCGCGCCGAGCTGGAGGCGCACACTCGCGCGCACTCGGGAGCCGGGGCCGCGCGGCACAAGTGTCTCATCTGTGATGAAGTCCTGCCTTCCGCTGCTGTTCTAGCTGAACATAAACTTACGCATTGCAAGgtgGTCGCTGGTGATACGTGTGCCCGATGTCGTTCAAGGCTGCCGTCGGAAGAGGCTTTCCTGAGTCACATGGCGCGTCACCACCCCGCGTTACCGGCCCCCTGTGTCATTTGCCGCCAGACTCTAGCCTCGGAGGCTGAAGCGCGTTTACACGCCCGTTTTCATTTGCGACCAAACGAAGACGAGCAGAGATGTGCTATATGTCTGAGAGCATTGTCGGAGAGCGAGGCTGGGGAGGGAGCGAGGGCGTGCACCACTTGCTACGCTCGCCACGCTGCGCCGAGACCTCCGCCTCCCTCGGACCACGATTGCCGGCTGTGCCGCCGGACGCTCGGCTCTCCCACCCGCCTGCAAGCCCATCTCATAGAACACACGTTCGCGGGTATCGGAGCTTTCACATGCTACCTCTGTTCCGCTATGTTTACGAGTGCGGCAGGATTGCAGAGGCATTTGCCGGAGCACGCCGCGGCGCCGAGACCTTACGACTGCGGCCGATGTGGACTGAAGTTCTTCTTCCGAGCGGAACTCGATAATCATGCGTTTGTTCATCTCGAGGAAGCAGAAATCGCTCAAAGAGCTTTTTATGAAGCTTACGCTCGCGGGGCGGCGTCGGCTTGGGCCGCTTTGCAACCGACGGACCTGGCGCCGCAGTCTACGGTGTCGACCTCAGCGCCGGCCGACAATGAGGTGTCGGTGAAGAAAGAACCTGAGGTTAAGGAAGAACGCAGCGATGAATATATCGAAGTGTCGTCGCCGCCACCTCAGCCGCCGCAAGCGGAGCCAGCGTCCACGTCTCCGCCGGTAGTGAAACAAGAGAAAGTCGACGAAGACTGa
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVTTEEIKQALGSVGSVGSVGSVGSTGGSSWPSSTPEASPSPASTPTSHDAVDAEADADAEPPFTLGATEHTPYKCKFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSHLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYSTAAALTSHMQGHKREREGRDGAVRKRALHCLRCGDAFRRPDLLQAHMSSAHGVEATSMTPPRRVASQPPTALLACIYCTRDTFTSMEQLQLHVRAAHSALLNGESSAQYAVDQPMPTDLSRRSPEISSPAKRARVNSGSMTPKTALSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGELGRGSPAPCVHCGATFADAAASERHLAAHYLAVSCEYSCHNCVRTFPSPEDLQKHLFDMHAHHMYQCNICKEVFDSKVAIQAHFAMAHSAENKVWVCRSCGSAGGALRSEAEGAAHVRARHAAARCACGAVLSGARALRAHAAAHHSYRCPAPTCTESFAVQYLLERHMQAHHAVTLPGLNGDLLRVKRTENKNAIEGDGASSPCIGGDGNGPMVPPGEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAGAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRSRLPSEEAFLSHMARHHPALPAPCVICRQTLASEAEARLHARFHLRPNEDEQRCAICLRALSESEAGEGARACTTCYARHAAPRPPPPSDHDCRLCRRTLGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHAAAPRPYDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALQPTDLAPQSTVSTSAPADNEVSVKKEPEVKEERSDEYIEVSSPPPQPPQAEPASTSPPVVKQEKVDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842895;
- 90% Identity
- iTF_00954845;
- 80% Identity
- -