Dmer006268.2
Basic Information
- Insect
- Drosophila meridiana
- Gene Symbol
- -
- Assembly
- GCA_035045185.1
- Location
- JAWNPF010000066.1:872024-873199[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0012 6.2 7.2 0.0 18 48 81 111 77 114 0.91 2 7 0.0071 36 4.8 0.3 21 45 115 139 108 142 0.84 3 7 0.0044 22 5.4 0.9 17 45 139 167 135 173 0.86 4 7 0.013 64 4.0 0.4 18 44 168 194 167 197 0.88 5 7 0.0018 9 6.7 0.6 17 44 195 222 189 226 0.89 6 7 0.00084 4.3 7.7 0.1 21 44 227 250 223 254 0.90 7 7 0.0086 43 4.5 0.3 21 44 255 278 251 285 0.85
Sequence Information
- Coding Sequence
- ATGGCACAAACGATAGACGTGGCCTGCGTCAAGGAGGAGCACTGCGAGGCCATTTGCAATATGTTCAAGACTCAGGATTGGCAACTGACGATGCGACACAGAGATTTGGGCTTGGTCAAGATCGAGCAGGACATGAGCTTTGTGTGGCAGAGCAGCGCCAGTGCCACCACGGACAACAAGCAGCGGCAAGCAGCAGAGAAGCCAACACTGAAGAAGTGGGGCAACTTTGTGACCGAATTTCAGAGCGGCAGCGAGAAGCCCTTCAAGTGCGCCCACTGCCCCAAGGACTTCGCGACGAGCAGCAATCTCAAAGTGCacctcacacgcacacactccgGCGATCGCGAGCGACCCTTTCTGTGTCCCACCTGTCCAAAGTCCTTCGCGACGAACGACAACCTTCAGAAGCACATCCGGCGCCACTCGAGCGAGCGGACACTCAGTTGTCCACACTGCCCGAAGCTATTCGCCACCAAGGACAACCTGCAGAAGCACATACGCCGCCACTCCAGCGAAAGAACGCTCATCTGCCCGCACTGTCCGAAGGCCTTCGCCACCAACGACAACCTGCAGAAGCACATCCGACGCCACTCGAGCGAGAGGACCCTCAACTGCCCGCACTGCCCGAAGGCCTTCGCCACGAACGACAATCTGCAGCGCCACATCCGCGGCCACACGGGCGAGCGGCCCTTCAAGTGTCCCTACTGTGCGAAGCCCTTCGCCCAAAACCGAGATCTCAAGGCGCACATCCTGGAGCACACGGGCGAGAAGCCCTACAAGTGCCCCCACTGCCCCAAGGCGTGCGTGCGCAGCGAGGGCCTGAAGAAGCACATCCTGCGCCTGCACAAAGACATCGAGCCAGAGCCGACGCAGACGACGGCCAAGCATTGGCAAACGGACAAAACACTCGCAAGCGGGCGCGTCCTCATGTACAAATACGATCTGACCAAGCAAATGCCCACGGGCGAGGCGTATGCCAAAGTCAATCTTGGCCCACAGCCGGAACGAGACCTATTGCCAGGAGCAAACGAATAA
- Protein Sequence
- MAQTIDVACVKEEHCEAICNMFKTQDWQLTMRHRDLGLVKIEQDMSFVWQSSASATTDNKQRQAAEKPTLKKWGNFVTEFQSGSEKPFKCAHCPKDFATSSNLKVHLTRTHSGDRERPFLCPTCPKSFATNDNLQKHIRRHSSERTLSCPHCPKLFATKDNLQKHIRRHSSERTLICPHCPKAFATNDNLQKHIRRHSSERTLNCPHCPKAFATNDNLQRHIRGHTGERPFKCPYCAKPFAQNRDLKAHILEHTGEKPYKCPHCPKACVRSEGLKKHILRLHKDIEPEPTQTTAKHWQTDKTLASGRVLMYKYDLTKQMPTGEAYAKVNLGPQPERDLLPGANE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00545381; iTF_00544629; iTF_00545629; iTF_00545376; iTF_00548961; iTF_00522339; iTF_00525286; iTF_00522349; iTF_00525295; iTF_00548953; iTF_00563553; iTF_00617284; iTF_00506245; iTF_00563301; iTF_00617032; iTF_00506250; iTF_00563307; iTF_00617038; iTF_00475344; iTF_00506513; iTF_00526706; iTF_00475349; iTF_00534709; iTF_00475606; iTF_00526710; iTF_00534713; iTF_00534970; iTF_00568385; iTF_00512868; iTF_00532516; iTF_00568390; iTF_00559627; iTF_00573457; iTF_00586809; iTF_00509947; iTF_00572733; iTF_00586813; iTF_00597537; iTF_00497539; iTF_00521539; iTF_00528195; iTF_00593251; iTF_00560424; iTF_00497546; iTF_00482380; iTF_00574192; iTF_00560433; iTF_00482388; iTF_00495253; iTF_00610038; iTF_00619990; iTF_00496760; iTF_00566936; iTF_00574201; iTF_00597529; iTF_00521530; iTF_00528187; iTF_00593243; iTF_00495262; iTF_00610046; iTF_00619998; iTF_00496768; iTF_00566944; iTF_00493794; iTF_00508482; iTF_00552450; iTF_00499013; iTF_00552441; iTF_00499003; iTF_01327298; iTF_01321318; iTF_01321322; iTF_01328017; iTF_01328021; iTF_01327292; iTF_00517123; iTF_00517115; iTF_00558883; iTF_00576468; iTF_00558874; iTF_00576477; iTF_00498276; iTF_00557324; iTF_00498285; iTF_00557329; iTF_01325060; iTF_00601957; iTF_00585348; iTF_00585354; iTF_00601965; iTF_00533974; iTF_00533980; iTF_00485990; iTF_00513585; iTF_00513594; iTF_00485981; iTF_00616326; iTF_00501929; iTF_00553163; iTF_00564779; iTF_00501935; iTF_00564788; iTF_00553174; iTF_00598998; iTF_00616318; iTF_00599008; iTF_00599723; iTF_00518572; iTF_00518563; iTF_00507021; iTF_00507015; iTF_00542574; iTF_00542565; iTF_01322798; iTF_01322794; iTF_00537647; iTF_00537640; iTF_00547023; iTF_00546788; iTF_00473200; iTF_00554512; iTF_00607217; iTF_00607206; iTF_00582386; iTF_00523091; iTF_00523084; iTF_00586099; iTF_00586094; iTF_00549684; iTF_00519317; iTF_00516406; iTF_00520054; iTF_00502662; iTF_00520053; iTF_00569110; iTF_00569366; iTF_00569118; iTF_01326582; iTF_01326577; iTF_00583095; iTF_00583087; iTF_00575736; iTF_00528965; iTF_00608583; iTF_00558315; iTF_00558060; iTF_00575741; iTF_00583839; iTF_01320600; iTF_00499705; iTF_00499714; iTF_00510681; iTF_00540505; iTF_00476762; iTF_00477006; iTF_00490906; iTF_00491171; iTF_00531080; iTF_00531087; iTF_00490912; iTF_01322074; iTF_01322068; iTF_00478876; iTF_00478865; iTF_00538364; iTF_00538359; iTF_00479613; iTF_00551724; iTF_00500445; iTF_00500454; iTF_00570526; iTF_00570517; iTF_00596062; iTF_00596070; iTF_00471007; iTF_00471017; iTF_00514304; iTF_00514313; iTF_01323520; iTF_01323516; iTF_01325792; iTF_01325796;
- 90% Identity
- iTF_00545381; iTF_00544629; iTF_00545629; iTF_00545376; iTF_00493794; iTF_00516406; iTF_00540505; iTF_00509947; iTF_00573457; iTF_00479613; iTF_00549684;
- 80% Identity
- iTF_00544629;