Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 9e-06 0.011 15.7 0.3 13 44 80 108 69 108 0.85

2 6 0.0048 5.9 6.9 2.6 2 41 129 164 128 166 0.88

3 6 0.006 7.3 6.6 1.5 2 41 157 192 156 195 0.86

4 6 0.0022 2.7 8.0 0.5 2 40 185 219 184 222 0.87

5 6 1.3 1.6e+03 -0.8 0.2 18 27 228 237 224 246 0.81

6 6 0.0012 1.5 8.8 2.3 5 44 244 279 240 279 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	9e-06	0.011	15.7	0.3	13	44	80	108	69	108	0.85
2	6	0.0048	5.9	6.9	2.6	2	41	129	164	128	166	0.88
3	6	0.006	7.3	6.6	1.5	2	41	157	192	156	195	0.86
4	6	0.0022	2.7	8.0	0.5	2	40	185	219	184	222	0.87
5	6	1.3	1.6e+03	-0.8	0.2	18	27	228	237	224	246	0.81
6	6	0.0012	1.5	8.8	2.3	5	44	244	279	240	279	0.84

Coding Sequence: ATGGAACAAGTGATAGATGTGGGCTGCGTTAAGGAGGAGCACTGTGAGGCAATATGCAATATGTTTAGAACACAGGATTGGCAATTGACGATGAGGCACAGAGACTTGGGACTCGTCAAGATAGAGCAGGATATGAGCATTGTGTGGCAAGGCACTAGCAATGGGGCGATAGATGACAAGGAACGACATTCAGAGAAGCAAAAAAATAATGTAAAATCGCAATTCAGTGTAGCAATTATCGAGAAACCATTCAAGTGTCCACATTGCACAAAGGATTTCGCAACCAGCAGCAACCTAAAGGTTCATCTATCTCGCACTCACTCTGGTGACCAAGAGCGACCCTTTCTGTGTCCCACTTGCCCCAAGTCATTTGCCACAAACGACAACCTACAAAAGCATATTCGCAGGCACTCAAATGAGCGAACTCTAAATTGTCCTCACTGCCCAAAGGCATTCGCTACCAAGGATAATCTGCAGAAACACATTCGCAGGCATTCGAGCGAACGCACCTTGAATTGCCCTCACTGTCCTAAAGCTTTTGCCACAAATGATAATCTTCAGAAGCACATCCGTAGGCACTCTAGTGAACGAACACTTCAATGTCCTCACTGCCCGAAGGCCTTTGCTACAAACGATAATCTCCAGAGACACATACGTGGTCACACCGGTGAGCGTCCTTTCAAATGCCCCTATTGTCCAAAACCATTTGCCCAAAATCGGGATCTCAAAGCGCACATTCTGGAGCATACTGGCGAAAAGCCCTTCAAATGTCCACACTGTCCGAAAGCCTGTGTGCGAAGCGAAGGGCTTAAAAAGCACATACTGCGTCTACACAAAGACATAGAACCAGAGCCAGCACAAACGGCAAGCAACGCAATGCCCAAACAATGGCAAGCTATCGACAAGACGTACGTCAACGACGCTAGCGGCAGAATCTTCATGTACAAATATGATCTGACTAAGCACACACGAATGCCCACAGGCGAGGCGTAA
Protein Sequence: MEQVIDVGCVKEEHCEAICNMFRTQDWQLTMRHRDLGLVKIEQDMSIVWQGTSNGAIDDKERHSEKQKNNVKSQFSVAIIEKPFKCPHCTKDFATSSNLKVHLSRTHSGDQERPFLCPTCPKSFATNDNLQKHIRRHSNERTLNCPHCPKAFATKDNLQKHIRRHSSERTLNCPHCPKAFATNDNLQKHIRRHSSERTLQCPHCPKAFATNDNLQRHIRGHTGERPFKCPYCPKPFAQNRDLKAHILEHTGEKPFKCPHCPKACVRSEGLKKHILRLHKDIEPEPAQTASNAMPKQWQAIDKTYVNDASGRIFMYKYDLTKHTRMPTGEA

Sequence clustering based on sequence similarity using MMseqs2