Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 6.9e-05 0.076 13.6 0.1 14 44 84 111 74 111 0.87

2 7 1 1.1e+03 0.2 0.3 19 41 120 139 118 140 0.74

3 7 0.0022 2.4 8.8 2.1 2 41 132 167 131 170 0.89

4 7 0.0041 4.5 7.9 1.7 2 41 160 195 159 198 0.87

5 7 0.0045 4.9 7.8 0.7 2 40 188 222 187 225 0.87

6 7 2.2 2.4e+03 -0.8 0.2 18 27 231 240 227 249 0.81

7 7 0.0021 2.3 8.8 2.3 5 44 247 282 243 282 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	6.9e-05	0.076	13.6	0.1	14	44	84	111	74	111	0.87
2	7	1	1.1e+03	0.2	0.3	19	41	120	139	118	140	0.74
3	7	0.0022	2.4	8.8	2.1	2	41	132	167	131	170	0.89
4	7	0.0041	4.5	7.9	1.7	2	41	160	195	159	198	0.87
5	7	0.0045	4.9	7.8	0.7	2	40	188	222	187	225	0.87
6	7	2.2	2.4e+03	-0.8	0.2	18	27	231	240	227	249	0.81
7	7	0.0021	2.3	8.8	2.3	5	44	247	282	243	282	0.84

Coding Sequence: ATGGAACAAGTGATAGATGTGGGCTGCGTGAAGGAGGAGCACTGTGAGGCAATATGCAATATGTTTAGGGGGCAGGATTGGCAATTGACGATGAGGCACAGAGACCTGGGACTCGTCAAGATTGAGCAGGATGTGAGCATTGTTTGGCAAGGCGGCAACAATGCGACAATAGACAACAAGGAGCGACAGccagaaaagcaaaaaaaATTTAACAATAGCGTGAAATCGCAATTCAGTGTAGCTATTGCTGAGAAGCCATTCAAGTGTCCACATTGCATCAAGGACTTTGCCACCAGCAGCAATCTTAAGGTTCATCTATCACGCACTCACTCTGGAGACCAAGAGCGCCCCTTTGTGTGTCCCACTTGCCCAAAGTCCTTTGCCACAAACGACAATCTACAGAAGCACATTCGCAGGCACTCGAATGAGCGAACTCTCCAATGTCCCCACTGTCCCAAGGCCTTTGCCACCAAGGATAATCTGCAGAAACACATTCGCAGGCATTCGAGCGAACGCACCTTGGTTTGTCCTCACTGTCCAAAGGCATTTGCGACAAACGACAATCTGCAGAAGCACATCCGTAGGCATTCTAGTGAGCGTACTCTTCAGTGTCCACACTGCCCGAAGGCATTTGCAACAAACGATAATCTCCAGAGGCACATACGTGGTCACACCGGCGAACGACCCTTCAAGTGCCCGTACTGTCCAAAACCATTTGCTCAAAATCGGGATCTCAAAGCACACATTCTGGAGCACACTGGCGAAAAGCCATTCAAATGTCCACATTGCCCAAAAGCATGTGTAAGAAGCGAAGGACTTAAAAAGCACATACTGCGACTACACAAAGACATTGAACCGGAACCAGCACAACCATCAAGCAACACACTGACCAAACAATGGCAAACTAGCGACAAGACGTACATCAATGACTCCAGCGGCAGAATctttatgtataaatatgaTCTGACTAAGCAAACTCGAATGCCCACCGGAGAGGCGTAA
Protein Sequence: MEQVIDVGCVKEEHCEAICNMFRGQDWQLTMRHRDLGLVKIEQDVSIVWQGGNNATIDNKERQPEKQKKFNNSVKSQFSVAIAEKPFKCPHCIKDFATSSNLKVHLSRTHSGDQERPFVCPTCPKSFATNDNLQKHIRRHSNERTLQCPHCPKAFATKDNLQKHIRRHSSERTLVCPHCPKAFATNDNLQKHIRRHSSERTLQCPHCPKAFATNDNLQRHIRGHTGERPFKCPYCPKPFAQNRDLKAHILEHTGEKPFKCPHCPKACVRSEGLKKHILRLHKDIEPEPAQPSSNTLTKQWQTSDKTYINDSSGRIFMYKYDLTKQTRMPTGEA

Sequence clustering based on sequence similarity using MMseqs2