Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 2.2e-05 0.023 14.9 0.1 16 44 82 107 70 107 0.89

2 6 0.0063 6.6 7.1 2.6 2 41 128 163 127 166 0.88

3 6 0.006 6.3 7.1 1.7 2 41 156 191 155 193 0.86

4 6 0.0034 3.5 7.9 0.6 2 40 184 218 183 221 0.87

5 6 1.8 1.9e+03 -0.8 0.2 18 27 227 236 223 245 0.81

6 6 0.0018 1.9 8.8 2.3 5 44 243 278 239 278 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	2.2e-05	0.023	14.9	0.1	16	44	82	107	70	107	0.89
2	6	0.0063	6.6	7.1	2.6	2	41	128	163	127	166	0.88
3	6	0.006	6.3	7.1	1.7	2	41	156	191	155	193	0.86
4	6	0.0034	3.5	7.9	0.6	2	40	184	218	183	221	0.87
5	6	1.8	1.9e+03	-0.8	0.2	18	27	227	236	223	245	0.81
6	6	0.0018	1.9	8.8	2.3	5	44	243	278	239	278	0.84

Coding Sequence: ATGGAACAAGTGATAGATGTGGGCTGCGTGAAGGAGGAGCACTGTGAGGCAATATGCAATATGTTTAGAGCGCAGGATTGGCAGCTGACGATGAGGCACAGGGACTTGGGACTCGTTAAGATTGAACAGGATATGAGTATTGTGTGGCAAGGCAGTAGCACTAACACAACAGACAACAAGGAGCGACACACAGAGAAACCAAAAAATGTCAAATCGCAATTCAATGCTGCACTTGTGGAGAAACCGTTTAAGTGTCCACATTGCAGCAAGGACTTCGCCACCAGCAGCAATCTCAAGGTGCATCTCTCACGCACTCACTCCGGAGACCAAGAACGACCCTTTTTATGCCCCACTTGCCCCAAATCTTTTGCAACCAACGACAATCTGCAAAAACACATACGCAGGCACTCAAATGAAAGAACTCTAAACTGTCCGCATTGCCCAAAGGCTTTCGCCACAAAGGATAATCTGCAGAAACACATACGCAGACATTCAAGCGAACGGACCTTAATCTGCCCACACTGCCCCAAAGCCTTTGCCACCAACGACAACCTACAGAAGCACATACGCAGGCATTCGAGTGAACGGACTCTACAATGTCCCCACTGCCCCAAGGCCTTTGCAACCAACGATAATCTGCAGCGGCACATACGTGGACACACCGGTGAACGGCCATTCAAGTGTCCGTACTGCCCAAAACCATTTGCTCAAAATCGGGATCTAAAAGCGCACATACTGGAGCACACTGGGGAAAAGCCCTTCAAGTGTCCACACTGTCCCAAAGCCTGTGTGCGAAGCGAAGGACTCAAAAAGCACATACTTCGGCTCCACAAAGACATAGAACCAGAGCCAACACAAGCACAAGCCTCTAGCAACACTTTGGCCAAACAATGGCAGGCGGCTGAGAAGACCTACGTTAACGATTCCAGTGGCAGAATCTTCATGTACAAATATGATCTGACCAAGAACACACGTATGCCCACCGGTGAGGCGTAA
Protein Sequence: MEQVIDVGCVKEEHCEAICNMFRAQDWQLTMRHRDLGLVKIEQDMSIVWQGSSTNTTDNKERHTEKPKNVKSQFNAALVEKPFKCPHCSKDFATSSNLKVHLSRTHSGDQERPFLCPTCPKSFATNDNLQKHIRRHSNERTLNCPHCPKAFATKDNLQKHIRRHSSERTLICPHCPKAFATNDNLQKHIRRHSSERTLQCPHCPKAFATNDNLQRHIRGHTGERPFKCPYCPKPFAQNRDLKAHILEHTGEKPFKCPHCPKACVRSEGLKKHILRLHKDIEPEPTQAQASSNTLAKQWQAAEKTYVNDSSGRIFMYKYDLTKNTRMPTGEA

Sequence clustering based on sequence similarity using MMseqs2