Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.9e-05 0.021 15.4 0.2 14 44 85 112 76 112 0.88

2 7 1.5 1.1e+03 0.4 0.3 19 41 121 140 119 143 0.75

3 7 0.0036 2.7 8.7 2.1 2 41 133 168 132 171 0.89

4 7 0.012 8.9 7.0 1.8 2 41 161 196 160 198 0.86

5 7 0.0072 5.3 7.8 0.7 2 40 189 223 188 226 0.87

6 7 3.5 2.6e+03 -0.8 0.2 18 27 232 241 228 250 0.81

7 7 0.0034 2.5 8.8 2.3 5 44 248 283 244 283 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.9e-05	0.021	15.4	0.2	14	44	85	112	76	112	0.88
2	7	1.5	1.1e+03	0.4	0.3	19	41	121	140	119	143	0.75
3	7	0.0036	2.7	8.7	2.1	2	41	133	168	132	171	0.89
4	7	0.012	8.9	7.0	1.8	2	41	161	196	160	198	0.86
5	7	0.0072	5.3	7.8	0.7	2	40	189	223	188	226	0.87
6	7	3.5	2.6e+03	-0.8	0.2	18	27	232	241	228	250	0.81
7	7	0.0034	2.5	8.8	2.3	5	44	248	283	244	283	0.84

Coding Sequence: ATGGAGCAAGTGATAGACGTGGGCTGCGTGAAGGAGGAGCACTGCGAGGCAATATGTAATATGTTCAGGGCCCAGGATTGGCAACTGACGATGAGACACAGGGACCTGGGACTCGTCAAGATTGAGCAGGACATGAGCATTGTGTGGCAGGGCAGCAGCAATGCGACGGTTATAGACAACAAGGAGCGCCACCCagagaagcagaagaaATTCAACAAAAGCGTCAAGTCGCAGTTTAGTGTAGCCCTGATTGAGAAACCGTTCAAGTGTCCGCATTGCACAAAGGACTTTGCCACCAGCAGCAACCTCAAGGTGCACCTATCACGAACTCACTCCGGGGACCAGGATCGTCCCTTTGTGTGTCCCACTTGCCCCAAGTCCTTCGCTACGAACGACAACCTGCAGAAGCACATTCGCAGGCACTCGAATGAGCGAACTCTTCAGTGTCCCCACTGCCCGAAGGCCTTTGCCACCAAGGATAATCTGCAGAAACACATTCGCAGGCACTCGAGTGAACGCACCTTGATCTGTCCCCACTGTCCAAAGGCTTTTGCCACCAATGACAATCTGCAGAAGCACATACGCAGGCACTCGAGTGAACGAACCCTGCAGTGTCCACACTGCCCGAAGGCTTTTGCCACAAACGATAATCTGCAGAGGCACATCCGTGGTCACACCGGAGAGCGGCCTTTTAAGTGTCCGTACTGTCCGAAACCATTTGCCCAAAATCGGGATCTCAAGGCGCACATACTGGAACACACTGGCGAAAAGCCCTTCAAGTGTCCACATTGCCCCAAGGCCTGCGTCAGAAGCGAAGGACTTAAAAAGCACATACTGCGACTACACAAGGACATTGAACCAGAGGCAACACAAACCGCAAGCAACACGTTGTCTAAACAATGGCAAACACAGGACAAGACCTACATCAACGACTCCAGCGGCAGAATCTTCATGTACAAATATGATCTGACTAAGCACACGCGAATGCCCACCGGCGAGGCGTAA
Protein Sequence: MEQVIDVGCVKEEHCEAICNMFRAQDWQLTMRHRDLGLVKIEQDMSIVWQGSSNATVIDNKERHPEKQKKFNKSVKSQFSVALIEKPFKCPHCTKDFATSSNLKVHLSRTHSGDQDRPFVCPTCPKSFATNDNLQKHIRRHSNERTLQCPHCPKAFATKDNLQKHIRRHSSERTLICPHCPKAFATNDNLQKHIRRHSSERTLQCPHCPKAFATNDNLQRHIRGHTGERPFKCPYCPKPFAQNRDLKAHILEHTGEKPFKCPHCPKACVRSEGLKKHILRLHKDIEPEATQTASNTLSKQWQTQDKTYINDSSGRIFMYKYDLTKHTRMPTGEA

Sequence clustering based on sequence similarity using MMseqs2