Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 7.3e-06 0.01 15.9 0.2 15 44 79 105 73 105 0.87

2 6 0.0055 7.7 6.6 2.3 2 41 126 161 125 164 0.89

3 6 0.0032 4.4 7.4 1.5 2 41 154 189 153 192 0.86

4 6 0.0056 7.8 6.6 0.7 2 40 182 216 181 219 0.86

5 6 1.2 1.6e+03 -0.8 0.3 18 27 225 234 220 243 0.81

6 6 0.0014 2 8.5 2.5 5 44 241 276 237 276 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	7.3e-06	0.01	15.9	0.2	15	44	79	105	73	105	0.87
2	6	0.0055	7.7	6.6	2.3	2	41	126	161	125	164	0.89
3	6	0.0032	4.4	7.4	1.5	2	41	154	189	153	192	0.86
4	6	0.0056	7.8	6.6	0.7	2	40	182	216	181	219	0.86
5	6	1.2	1.6e+03	-0.8	0.3	18	27	225	234	220	243	0.81
6	6	0.0014	2	8.5	2.5	5	44	241	276	237	276	0.84

Coding Sequence: ATGGCACAAACGATAGATGTGGCGTGCGTCAAGGAGGAGCACTGCGAGGCCATTTGCAATATGTTCAAGACTCAGGATTGGCAGCTGACGATGCGCCACAGAGATCTGGGCCTGGTCAAGATCGAGCAGGACATGAGCTTCGTGTGGCAGAGCAGCGCCAGTGCCAACATGGACAACAAGCAGCGGCAAGCCGCAGAGAAACAAACACTCAAAAAATTTCAGAACGGCAGCGAAAAGCCCTTCAAGTGTGCCCACTGCCCCAAGGACTTTGCCACGAGCAGCAATCTCAAGGTGCATCTCACGCGCACGCACTCCGGCGACCGGGAGCGACCCTTCCTCTGTCCCACCTGTCCGAAGTCCTTCGCTACCAACGACAACCTGCAGAAGCACATCCGTCGCCACTCGAGCGAGAAGACACTGAGTTGCCCGCACTGCCCGAAGCTGTTCGCCACCAAGGATAACCTGCAGAAGCATATACGGCGGCACTCGAGCGAGCGGACGCTCATCTGCCCGCATTGCCCGAAGGCCTTCGCCACCAACGACAACCTGCAGAAGCACATCCGTCGGCACTCGAGCGAGAGGACTCTCAATTGCCCGCACTGCCCGAAGGCCTTCGCCACGAACGACAATCTGCAGCGGCACATACGCGGGCACACGGGCGAGCGACCGTTCAAGTGTCCCTATTGCCCGAAACCCTTCGCCCAGAACAGAGATCTCAAAGCGCACATCCTGGAGCACACGGGCGAGAAGCCCTACAAGTGTCCCCACTGCCCTAAGGCGTGCGTGCGCAGCGAGGGCCTCAAGAAGCACATCCTGCGCCTGCACAAAGACATCGAGCCGGACCCGACGCAGACCACAGCCAAACATTGGCAAACGGACAAGACTTTCGCGGCGGACTCGAGTGGACGCGTCTTCATGTACAAATACGATCTGACCAAGCAGACGCGACTGCCCACGGGCGAGGCGTAG
Protein Sequence: MAQTIDVACVKEEHCEAICNMFKTQDWQLTMRHRDLGLVKIEQDMSFVWQSSASANMDNKQRQAAEKQTLKKFQNGSEKPFKCAHCPKDFATSSNLKVHLTRTHSGDRERPFLCPTCPKSFATNDNLQKHIRRHSSEKTLSCPHCPKLFATKDNLQKHIRRHSSERTLICPHCPKAFATNDNLQKHIRRHSSERTLNCPHCPKAFATNDNLQRHIRGHTGERPFKCPYCPKPFAQNRDLKAHILEHTGEKPYKCPHCPKACVRSEGLKKHILRLHKDIEPDPTQTTAKHWQTDKTFAADSSGRVFMYKYDLTKQTRLPTGEA

Sequence clustering based on sequence similarity using MMseqs2