Prub001769.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plemyria rubiginata
Gene Symbol
-
Assembly
GCA_963576535.1
Location
OY754906.1:4934527-4942773[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 1.7 1.1e+02 4.0 0.4 1 23 54 77 54 77 0.95
2 20 0.91 59 4.9 4.3 1 23 84 107 84 107 0.97
3 20 5.1 3.3e+02 2.5 3.9 1 23 180 202 180 202 0.97
4 20 0.002 0.13 13.3 1.0 2 23 208 229 207 229 0.97
5 20 2.5 1.6e+02 3.5 1.5 1 23 235 257 235 258 0.94
6 20 0.2 13 6.9 3.4 2 22 490 510 489 510 0.95
7 20 0.41 27 6.0 0.5 2 23 761 782 760 782 0.96
8 20 0.012 0.8 10.8 1.5 2 23 854 875 853 875 0.96
9 20 0.036 2.3 9.3 0.5 1 23 883 905 883 905 0.97
10 20 0.27 17 6.6 5.4 1 23 936 958 936 958 0.95
11 20 0.00028 0.018 15.9 4.0 1 23 967 989 967 989 0.99
12 20 9.6 6.2e+02 1.7 4.6 1 23 1070 1092 1070 1092 0.94
13 20 0.03 2 9.5 1.9 1 23 1147 1169 1147 1169 0.95
14 20 0.81 52 5.1 0.0 2 23 1176 1197 1175 1197 0.97
15 20 0.0012 0.078 13.9 0.7 1 23 1265 1287 1265 1287 0.96
16 20 0.034 2.2 9.4 0.3 1 23 1293 1315 1293 1315 0.93
17 20 0.0078 0.5 11.4 2.6 1 23 1404 1426 1404 1426 0.97
18 20 0.00019 0.013 16.4 1.4 1 23 1432 1454 1432 1454 0.99
19 20 0.34 22 6.3 1.6 1 23 1542 1564 1542 1564 0.95
20 20 0.0016 0.1 13.6 3.3 1 23 1575 1597 1575 1597 0.98

Sequence Information

Coding Sequence
ATGCTACAGCAGATGTCCTCGTCGCTGAGCGCGCAAGTCGGCGAGGTCACTACTATTGCGCGCCCGTTCGAAGGTCGCTTCTCCGTAGACGTCTCCTCGGAGGCTTCCTCGGACGCCGCGGAGGAGTTTGAACTACCGCAGTGCAAGATAAGAAGGAACTATAACTGTGCAAAGTGCACTTATAATACGCAGAACCCGCGCGCTTATCTTGTTCACACGCGAGACGTTCATTTCGGAAGATTTAAGATTTATGAGTGTCAACATTGCATTTATGCTTCAAGACACCAGCAGAAGCTGTTGAGGCATACGAAAATGGTTCACGGGGCGacgacttcttcttcttcggcAAAAGCGGAGCCTGAAGCTGCCGCTGGTCAAGATGTAGAGAACATAGAAGATCTGCTAGAAGAGATCGAAGAGTGCGATGATTCCCAGATGGAAATGGACTTAGATGATCAACCGGAGCGCGCCGATGAAGCAGAAATGTTTGTCTCTAGAAGCGGTAATCCCGGATTGCCAAAAGGAAAAGGAAAATTCTTTTCGTGCGACAAATGCAACTACGTGACCCACATAAAAGCGCGGTACACGAAACACGTCAAGTACCATTCGATGCCGATGATCAAGTGCACCATGTGCGACTTCCGGACCCCCTACAAGTGGAATCTGGATCGGCACATGAAGAACCACGGCGGAAGCGGGAGCTTCGTGTGCTCGAAGTGCACCTTCACGGCGGATATAAAGCAGAGCCTGACGGTGCACGAAATGAATCACCAcacgccgcccgcgcgccactcGCTCGCCAGTCGGCGACGCAACCGCGTGGGAGCCAGCGACCTGACGGCCGCCGCCGAGGCGAGCGCGCTGCTCAAGGAGGAGGAAGGGAGCGGCGACTCGCGCTCCTCGCACTCCATCTCGGACATCATGGGCTTGCAAGACGCAGAACGAGACATAGTAAGCTGCAACAGCGATTCCAATGATACTTCGTCGCAAGTCAGCCCGGAAGGGGATCTGTCTTTACACGACGCACACGGACAACATTCCCCACACTCAGGAAGTGAAGACAGGGCACACAAGCAAAGCAAAAAAGCCCCCAGGCCTATCCCCCAACTCATTCCCTTAAACGCATCAACCCCCAACACAAACAAAACCACAGGCGAACCACCAGCGAAGAAATTCAAAGACAGTTCACAACTCGCGAGCAAGCTCGAAAACTTGCCCAATGACATCACTTTAACACCGGTGAACAACACACCAAAAGAAACTATAGTCCGCAAGAAAAACGAGTCATTCTTTGACAAGTTGAAAGAAAGGCTGCTGACAGAGACGGGAGAAGAAGGCTCTTTGAAATGCAAAAACTGCGGATTCGACAGCAAGTGTCTATCTGAACATTCCGTGCACGAAAAGAACTGCGCGGTGCCAGCCAGCCGCGTCGTTTTGAACCCATCACATTCCACAATGGGCTCCACTCGCTGCCAAAACTGCAGACATCGGTGCAAGTCCAGCGCAGATCTGTACGTACACATGCAAACTTGCGGCAAGAAGGAAAACACCCAAACCCCTACGGAACCCAAACGCGACCACAGCGAAGCTTCTACTTCAAGCCAAGATAAAGACGCAGAGCCACACCCCATGGAGAACGTAGTCTTCGTATGGAATAACATAAATCAAGGCAACAAATTCGACAGACCTCTCGATATCAACATCAACGATGACTCAACGATGCCGGACTCGCAAAGGAATTACGACAACGAAACCGTCGATGAGAACGAGAGCATGAACTTGTCGCCCAACAGTTTGAGTCTCGGGAAAAACGTTTACAAATGCTCAGATTGCAAGTTCTGGGCCGCTACTGCTTCTAGATTCCACGTCCACATAGTGGGCCATTTGAACAAGAAGCCGTTTGAATGCTCCCTATGCAAATACAAGTCTAACTGGCGCTGGGATATAACAAAGCATATCAAACTGAAGTCCGTACGAGATCCCGAGCACAATGATGCTAAAGTGCTGATGACGGACGAGACCGGCCGACGGAACTACAGCAAATACAACAAGTTCTTAGCTGTTCCGGTCGTTAACGAAAACGGAGAAACTGAATTCCACTACATTGATCAAAACACAACGGTCGATGCGACGATGGAAATGGATGAACCGTTGAATGATACAAACGAAATGATGAATACTTCCTATGAAATGCAGCCGCTTAATTTGCAGACCCAGTATGGTGATCTCAAGTTTAACCCGATGGACATGCCTGATAAGAAACCTAAGAAAACAATGTGGAAATGCAAAAAATGCAATTACAAAGACCCGTCCAAGGATGCGTTACTGGATCACGTGAGGCAGCACTCCAAGGATGGCGCCGACGAAGCAGCCAAGAAAGCAGAGGCGCCCGATCCGGCCGACCTCGCATATCGCTGCGGACACTGCAACCAACTGTCCAACTGGAAACACGTTATACAGAGACATTGCCGTTTGAAACACGAGGGAATAATAAAAGTGATCACTACAGTAAAACCCAAACCCGACCCCAACGCGCCGGCTGCCGAAACCTTCAACGATTACTGCACCAAGTGCCCCTTCCGGACCAACGACAAGAAACAACTCAACGAACATTTACAGCAACACCAACCATCCTCACAATCCATCTTCAAGTGCTACTTCTGCCCTTACTTCGTCAAAGACGAGCAAGACTTGATCCAACACCTTCTGCTGCACGGTATAACAGATCCCGAAGAGTACATCGCCAAAGCAATGGGCTGCAGGTCCCCTCTGCCCGAGGGGCTATCAGCAGGCCCAGCCAAGCGCCACAAGTGCCACGAATGCCCGTACGAGACCAACAGCAAATCTCAGTACATGTATCACGAGCAGTTTCATCGTAGCACGTCCGCAGAAACCCCCTACAAATGCCCCGAGTGCAACTACAGTGTATCGAAGAGACATCTCCTCCACCAACACCTAAGAGTTCACGGGATTTTCCCAAAGAAAAACGAAACTGAAGCAGAATTGGAAGCGTCAACCTCCAACTCAAAAGCTGACAAATTCGATAGCTTTAGTGAGGAAATTCCTTTCGTATGGGTCTCGGCGAGAAATGAATTCCATAAAATGTACAAATGTCGCTATTGTTCGTACGTCAACTCGCAGAAATGTAAGATACCCAACCATGAGAAGATACATTGCCTCGGCTTCGAAAACAGCGACGTGATAATATATAAGTGTTTAGAATGTAAGTTTTCGTGCGATAATGCCGGGAGATTGGCAGAACATTGCAAAAAACATGGACTTCTGTACGGCCGCATTTACAGCATGGTCGAGGAAGACGTTCCCGATGAAGACCAAATAACGAGACTGCGTAGAGCTATAGATCTTGAAAAGAGCACTGCGAGCGAGGACACAGCAGAGGAAAATGCAGTCGTCGATTCGAAAGAAATTAAAATGCTGTACTTTTGCCAAAAATGCCCCGCTCGATATTTTAATGAAAGTGATCTAAAAACGCATGAAAAATTCCACGACCTGACAAATGCAAATAAGTGTAAGAACTGTGAGTTTTCAGTGCCAGAAGAGGCTGATCTGGTTATCCACCTTTCTGTTCATTCGGACGAGCACCATCTAAAATCGAACATGCTTAAATTTATTCACAATTCACACTCTTTATACAAAGAACCTAGATTAGAAGCCAATCGTAATCCTGACTCTTTAGACGTTAGTTGGTCTGTAGCAGTTAATTACAAAACCAACGAAAATACGGAGCCTCATCATAGGAAATCTTCAGATACGAAACATACTCCCAAACAATACTACTGCAAGGAATGTCCCGCTAAGTTCTTTAAAAGTTCTGCTCTTACATACCACATGGGATTGCACGGTGGCGAAGGAGAATATAAGTGTAAAAGATGCAGTTACGCTGTTAAGAATATCGGTAATTTAGCTAAACACGAAGTATTGCATGAAAATGATAAGACAGCAAATTGCGAATACGAATCCGGCGATGATttagattttaaaaatattcctcTCTCAGGAACAGACTTGTTTCAAAGAAAGACTGAAGCTCAAAAAAGAGTATTGACCGACAAAGACAAATTGGTCAAACCGAATGACCATTTCCCACCAGTGCTCCAGGCGGACCCACAATTTGGGTATCTGATGCATGGTAATCCGGAATTCATCTACCCTACGTACCTTAAAAACGGGCGACAAAAGGAGAAGCGCTACAAATGCCATAAGTGCCCCTCAGCTTTTGAAAAGCGTGaacaatacaaaatacatttatcGCTACACGGCTCCAAGCAAAGATATAAATGCGAGCTATGCGACTACTCGGTCAAATATTACGCCAATTACGTTCAACACATGCGAAAGCATCAAATGAATGACGAAGCTCAAGCGGAACGGATGAAAGGGAGCAATGGTGAGCcggaaaatattgaaataaaacaagaagataGTACAGACACCATCAAACTCGCGATAAAAACAATGCCCAAGGGAACACCTAAAACCGACTTCCAGCAGTTTTCAATAAGAGATCAACAAACCCTGCGGCTGTTGCAACTTAAGAGGTCGATGAATAATAGTGGAAAGGATGCAACTACTGAAAACTCTCCAGCAAAGGAGCGCAAATTGCACATTTGTCTCCTTTGCCCATATACAAATCAACGTCAAGATGCTTTGAACAATCACTACAGGAGACACGATGAAAATGATGTTTTCCACAATGGCAGTCACAAATGCTCCTATTGCGATTTAGTAGTTGTGCAATCCCATTTCTTACGGGAGCATATCAAAACTCACTTTAATTTTAACAAGGTTCTGACTCCAGAATGCTTCGTAGCTAATAATGACGTTAGTTTTACGATATCAAACGTTGATGATGAATGTGAACCAGTTGATCTCAAATTAGACTTGAAAAGTAAGGTTTCAGCATGCAATGATGAAAAgatatttgtaaaaattaaGACAGGCGAACTTGTAGccgaataa
Protein Sequence
MLQQMSSSLSAQVGEVTTIARPFEGRFSVDVSSEASSDAAEEFELPQCKIRRNYNCAKCTYNTQNPRAYLVHTRDVHFGRFKIYECQHCIYASRHQQKLLRHTKMVHGATTSSSSAKAEPEAAAGQDVENIEDLLEEIEECDDSQMEMDLDDQPERADEAEMFVSRSGNPGLPKGKGKFFSCDKCNYVTHIKARYTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGSGSFVCSKCTFTADIKQSLTVHEMNHHTPPARHSLASRRRNRVGASDLTAAAEASALLKEEEGSGDSRSSHSISDIMGLQDAERDIVSCNSDSNDTSSQVSPEGDLSLHDAHGQHSPHSGSEDRAHKQSKKAPRPIPQLIPLNASTPNTNKTTGEPPAKKFKDSSQLASKLENLPNDITLTPVNNTPKETIVRKKNESFFDKLKERLLTETGEEGSLKCKNCGFDSKCLSEHSVHEKNCAVPASRVVLNPSHSTMGSTRCQNCRHRCKSSADLYVHMQTCGKKENTQTPTEPKRDHSEASTSSQDKDAEPHPMENVVFVWNNINQGNKFDRPLDININDDSTMPDSQRNYDNETVDENESMNLSPNSLSLGKNVYKCSDCKFWAATASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSVRDPEHNDAKVLMTDETGRRNYSKYNKFLAVPVVNENGETEFHYIDQNTTVDATMEMDEPLNDTNEMMNTSYEMQPLNLQTQYGDLKFNPMDMPDKKPKKTMWKCKKCNYKDPSKDALLDHVRQHSKDGADEAAKKAEAPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHEGIIKVITTVKPKPDPNAPAAETFNDYCTKCPFRTNDKKQLNEHLQQHQPSSQSIFKCYFCPYFVKDEQDLIQHLLLHGITDPEEYIAKAMGCRSPLPEGLSAGPAKRHKCHECPYETNSKSQYMYHEQFHRSTSAETPYKCPECNYSVSKRHLLHQHLRVHGIFPKKNETEAELEASTSNSKADKFDSFSEEIPFVWVSARNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCLGFENSDVIIYKCLECKFSCDNAGRLAEHCKKHGLLYGRIYSMVEEDVPDEDQITRLRRAIDLEKSTASEDTAEENAVVDSKEIKMLYFCQKCPARYFNESDLKTHEKFHDLTNANKCKNCEFSVPEEADLVIHLSVHSDEHHLKSNMLKFIHNSHSLYKEPRLEANRNPDSLDVSWSVAVNYKTNENTEPHHRKSSDTKHTPKQYYCKECPAKFFKSSALTYHMGLHGGEGEYKCKRCSYAVKNIGNLAKHEVLHENDKTANCEYESGDDLDFKNIPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERMKGSNGEPENIEIKQEDSTDTIKLAIKTMPKGTPKTDFQQFSIRDQQTLRLLQLKRSMNNSGKDATTENSPAKERKLHICLLCPYTNQRQDALNNHYRRHDENDVFHNGSHKCSYCDLVVVQSHFLREHIKTHFNFNKVLTPECFVANNDVSFTISNVDDECEPVDLKLDLKSKVSACNDEKIFVKIKTGELVAE