Obrm006094.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- -
- Assembly
- GCA_001266575.1
- Location
- JTDY01001585.1:30645-39662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1.2 76 4.0 0.4 1 23 50 73 50 73 0.95 2 20 0.62 39 4.9 4.3 1 23 80 103 80 103 0.97 3 20 3.5 2.2e+02 2.5 3.9 1 23 180 202 180 202 0.97 4 20 0.0013 0.086 13.3 1.0 2 23 208 229 207 229 0.97 5 20 1.7 1.1e+02 3.5 1.5 1 23 235 257 235 258 0.94 6 20 0.061 3.9 8.1 3.7 2 22 497 517 496 517 0.96 7 20 3.9 2.5e+02 2.4 0.4 1 20 612 631 612 634 0.70 8 20 0.021 1.4 9.5 1.7 2 23 842 863 841 863 0.96 9 20 0.024 1.5 9.3 0.5 1 23 871 893 871 893 0.97 10 20 0.14 8.9 6.9 5.6 1 23 932 954 932 954 0.95 11 20 0.00019 0.012 16.0 4.0 1 23 963 985 963 985 0.99 12 20 0.2 13 6.4 2.2 1 23 1064 1086 1064 1086 0.98 13 20 0.024 1.5 9.3 1.8 1 23 1141 1163 1141 1163 0.95 14 20 3.1 2e+02 2.7 0.1 2 23 1170 1191 1169 1191 0.95 15 20 0.00045 0.028 14.8 0.7 1 23 1259 1281 1259 1281 0.96 16 20 0.011 0.72 10.4 0.9 1 23 1287 1309 1287 1309 0.95 17 20 0.0053 0.34 11.4 2.6 1 23 1399 1421 1399 1421 0.97 18 20 0.00013 0.0084 16.4 1.4 1 23 1427 1449 1427 1449 0.99 19 20 0.62 39 4.9 2.0 1 23 1539 1561 1539 1561 0.96 20 20 0.041 2.6 8.6 6.3 1 23 1572 1594 1572 1594 0.98
Sequence Information
- Coding Sequence
- ATGTCCTCGTCGCTGAGCGCGCAAGTCGGCGAGGTCACAACTATTGCGCGCCCGTTCGAAGGTCGTTTCTCTGTGGACGTCTCTTCGGAGGCATCCTCGGACGCGGCGGAAGAGTTCGAACTACCGCAGTGCAAGATAAGAAGGAACTATAACTGTGCGAAGTGCTCTTATAATACGCAGAACCCGCGCGCATACCTTGTACACACACGAGACGTTCATTTCGGAAGATTTAAGATTTATGAGTGTCAGCATTGCATTTATGCTTCGAGACATCAGCAGAAACTCTTGAGACATACGAAGATGGTTCACGGAACGACGCCTACGACATCCACAGTTAGAATGGAGACCGACGCTGCCGCTAACGAGAGCGCAGCGGACAACATGGAGCGAATGGAAGATCTACTAGAAGAGATAGAAGAGTGCGATGACTCTCAGATGGAAATGGACGGAGACGAGCCGGCCGAGCGCGCCGACGACGCAGATATGTTCGTAGCTAGAAGTGCCAACTCCGGATTGCCGAAGGGAAAAGGAAAGTTTTTTTCTTGCGACAAATGCAACTACGTCACCCATATCAAAGCAAGATACACGAAGCACGTGAAGTACCACTCGATGCCGATGATCAAGTGCACCATGTGCGACTTCCGCACGCCTTACAAGTGGAATCTGGATCGGCACATGAAGAACCACGGCGGGAGTGGTAGTTTCGTGTGCTCGAAGTGCACCTTCACGGCAGACATCAAGCAGAGCCTGACGGTGCACGAGATGAATCATCACACGCCACCCGTGGGCCAGTCGGCGGCGGCGAGCCGACGTCGCAACCGAGTGGGCGCCAGCGACCTGCTGTCCGCGGAGTCGACCAGCGCGCTGCCCAAGGAGGAGGAAGGGAGCGGCGACTCGCGCTCCTCGCACTCGGTCTCGgaTATTATGGGCTTGCAAGACGCGGAGAGAGATATAGTTAGCTGCAACAGTGATTCCAATGATGTCGCTTCGCCAGAAGTCAGCCCGAACGGAGAAGGGAATCAATCTGTTGAAGATGCTCTCGGCCAACAGTCCCCAAGCTCAGGAAACGAAGACAAGGCGCACAAGCAGAACAAAAAAGCCCCCAGGCCTATACCACAACTGATTCCTCTTAACACGTCAACCCctaatcaaaacaaaacaacaggCGAACCGCCAGCGAAGAAATTCAAAGAATCTACAAGCGGAGATCTAGCGAACAGGTTTGAAAACTTGCCAGATGACATCACTTTGATACCGGTAAACAACACACCAAAAGAAACCATGGTCCGCAAGAAAAATGAATCATTCTTCGACAAATTGAAGGAAAGATTACTGACTGAAACGGGCGAAGAGGGATCCCTGAAATGTAAGAGCTGTGGTTTCGAGAGCAAGTGTCTATCGGAACATTCCGTGCATGAAAAGAATTGCGCAGCTGCTCAGGCCAGCCGCGTGATGATGAGCGCGTCGCATTCCAGCATGGGCTCCACTCGTTGCCAAAACTGCAGACATCGGTGCAAATCTAGCGCCGACTTGTACGTACACATGCGCACATGCGGGAAAGAAAACACACAGAATGCGACACAACCCAAACGCGACACTAATGAAGCTTCTACGTCCAGTTACGATAAAGACGCAGAACCACACCCCATGGAGAATGTAGTTTTCGTATGGAATAACATAAACCAAGGCAATAAATTCGAAAGAGCCCTCGATATTAACATCAACGATGACTCAACTATGCCGGAGTCACAGAGAAATTACGATACCGAAATCGTCGACGAAAACGAGGGTATGAATTTATCGCCAAACAGTTTGAGCCTTGGGAAGAATGTTTACAAGTGCCCCGATTGCAAGTTCTGGGCTGCTACAGCTTCTAGATTCCATGTCCATATCGTGGGGCATTTAAACAAGAAGCCTTTTGAATGCTCGCTTTGCAAATACAAGTCTAACTGGCGATGGGATATTACTAAACATATCAAATTGAAGTCCGCTCGAGATCCGGAACACAACGACGCTAAGGTGCTGATGACAGACGAGACCGGTAGACGAAACTACAGCAAATACAACAAGTTCTTGGCTGTTCCGCTCCTAACAGAAAGTGGGGAAAATGAGTTCCATTACATCGATCAAAACACAGCAGTCGACGCCTCGATGGAGCTGGATGAATCACTGAATGATAACAATGAAATGATGAACACGGCTTATGAAATGCAGCCGCTCAACTTGCAGACCCAGTTTGCTAATGAGACTTCTATTTTCAGAGATCAGTCGAAGGACGCCCTGCTGGATCATGTGCGGCAGCACTCCAGAGCCGAGGGCAGTCCCGATGACTGCAAGAAGGCAGACGCACCAGACCCGGCTGATCTCGCCTACCGGTGCGGGCACTGCAACCAATTGTCCAATTGGAAACACGTAATACAGAGACATTGCCGCTTGAAACACGACGGTATAATAAAAGTGATCACCACAGTGAAGCCCAAACCCGACCCGGTGCCACCCTCAACCAGCGAGACCTACAACGATTACTGCACCAAGTGCCCGTTCAAGACCAACGACAAGAAACAACTCTTTGAACATCTACAGCAACACCAGCCTTCATCCCAGTCCATCTTCAAATGCTACTTCTGCCCCTACTTCGTCAAAGATGAACAAGATTTAATCCAACATCTTTTGCTACACGGTATAACTGATCCAGAAGATTACATCGCAAAAGCGATGGGCTGTAGATCTCCTCTCCCCGAGCACTCCGTGGTCCACGAGACGATGGTCGCCGCCAGCGGGTCCACGAAGCGCCACAAGTGCCACGAGTGCCCGTACGAAACCAACAGCAAATCCCAGTTCATGTATCATGAACAATTCCATCGCTCCACGTCTGCGGAAACCCCCTACAAATGCCCCGAGTGCAACTACAGCGTGTCCAAGAGACATCTGCTCCATCAGCACTTGAGAGTTCACGGAATATTCGCCAAGAAAAACGAAACTGAAGCAGAATTAGAAGCATCAACCTCCAAAGCTGACAAATCGGATAGCTTTAGTGAAGAAATACCTTTTGTATGGGTTTCAGCCAGAAATGAATTCCACAAAATGTACAAATGTCGTTATTGTTCGTACGTTAACTCGCAGAAATGTAAGATACCTAACCATGAAAAGATACATTGTCTCGGATTCGAGAATAGCGAAGTGATCATTTACAAGTGTTTAGAATGTAAATTCACGTGCGATAATGCCGGGAGACTGGCGGAACATTCCAAAAAGCATGGCCTTCTGTACGGTCGTATTTACAGCACCGTCGATGAAGACATTCCCGATGAAGATCAAATAACTAGGCTCCGTAGAGTTATTGAACTTGAAAAGAGCGCTGTGGATGAAGATTCGACAGAAGAAAACGCATTCTGTGATTCCaaggaaattaaaattttgtacttcTGTCAGAAATGTCCAGCCAGATATTTTACTGAAAGTGAACTAAAAAGCCACGAAAAATTCCACGACctatcaaattcaaataaatgtaAGAACTGCGAGTTCTCAGTCTTAGATGAGACTGACCTAGTCGCCCACCTGTCTGTCCATTCTGACGAGCATCATATTAGAACAAACATGCTTAAATTCATTCACAATTCACACTCTCTTCATAGAGAACCTAGATTGGAAGCCAGTCGTCATTCTGACTCTTCAGACGTGAGTTGGTCGGTTGCAGTCAATTACAAAAGCAACGAAAATACGGAGCCTCAACATAAGAAAACTCTAGAAACAAAACATACGCCCAAGCAATACCGTTGCAAGGAATGTCCAGCCAAGTTCTTTAAAAGTTCAGCGCTTACATATCACATGGGATTACATGGTGGCGAAGGAGAACATAAGTGTAAAAAATGCAGTTACGCGGTAAAGAACGTCGGAAATTTAGCTAAACACGAAATATTACATGAAAATGATATCAAGCCAGCCAATTGTGAATATGAATCCGGCGATgatttagattttaaaaatattcctcTCTCAGGAACTGACTTATTTCAAAGAAAGACTGAAGCTCAAAAAAGAGTATTAACCGATAAAGACAAATTGGTTAGACCAAATGATCATTTTCCGCCTGTACTTCAGGCGGATCCTCAATTTGGATATCTGATGCATGGTAATCCAGAGTTTATATATCCCACGTACCTGAAAAACGGGCGTCAAAAAGAGAAACGATACAAATGCCATAAGTGTCCCTCGGCTTTCGAAAAGCGCgaacaatacaaaatacatctaTCGCTTCACGGTTCGAAACAGAGATATAAATGCGAGTTATGCGACTACTCTGTAAAATATTACGCCAATTACGTTCAGCACATGAGAAAGCACCAAATGAATGATGAAGCTCAGGCCGAGAGGATGaaaggaagcaatggcgacccTGAAAGTCAGGAAGAAGTGAAACAAGAAGAAAGCGCGGACAACATCAAGCTGGCAATCAAAACCATGCCTAAGGGAACACCTAAAACAGACTTTCAACAATTCTCAATACGTGATCAACAAACCCTTCGGCTGTTACAACTTAGGAGATCTATGAATAACGGGGGAAAGGATGCAACTACATCCGAAACGTCGCCAGTAAAAGAGCGCAAAATGCACATGTGTCTCCTATGCCCTTACACAAATCAGCGGCAAGATGCTTTGAGCAACCATTATAGAAGACATGATGAAACTGATATCCTCCATGGTGGCAGCCATAAATGCTGCTACTGTGACTTAGTAGTTGTGCAATCTCATTTCTTGCGAGAGCatttaaaaacacattttaattttaacaaaattcttACGCCTGAATGTTTCGTAGCAAATGATGATGTTAGTTTTATGATATCTAAAGTAGATGAAGAATGCGAACCAGTTGATCTCAAATTAGACatgaaaaataagattttatcgTGCAATGATGAAAAAATGTTTGTCAAAATTAAGACAGGAGAACTTGTAGTTGAATAA
- Protein Sequence
- MSSSLSAQVGEVTTIARPFEGRFSVDVSSEASSDAAEEFELPQCKIRRNYNCAKCSYNTQNPRAYLVHTRDVHFGRFKIYECQHCIYASRHQQKLLRHTKMVHGTTPTTSTVRMETDAAANESAADNMERMEDLLEEIEECDDSQMEMDGDEPAERADDADMFVARSANSGLPKGKGKFFSCDKCNYVTHIKARYTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGSGSFVCSKCTFTADIKQSLTVHEMNHHTPPVGQSAAASRRRNRVGASDLLSAESTSALPKEEEGSGDSRSSHSVSDIMGLQDAERDIVSCNSDSNDVASPEVSPNGEGNQSVEDALGQQSPSSGNEDKAHKQNKKAPRPIPQLIPLNTSTPNQNKTTGEPPAKKFKESTSGDLANRFENLPDDITLIPVNNTPKETMVRKKNESFFDKLKERLLTETGEEGSLKCKSCGFESKCLSEHSVHEKNCAAAQASRVMMSASHSSMGSTRCQNCRHRCKSSADLYVHMRTCGKENTQNATQPKRDTNEASTSSYDKDAEPHPMENVVFVWNNINQGNKFERALDININDDSTMPESQRNYDTEIVDENEGMNLSPNSLSLGKNVYKCPDCKFWAATASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAVPLLTESGENEFHYIDQNTAVDASMELDESLNDNNEMMNTAYEMQPLNLQTQFANETSIFRDQSKDALLDHVRQHSRAEGSPDDCKKADAPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTVKPKPDPVPPSTSETYNDYCTKCPFKTNDKKQLFEHLQQHQPSSQSIFKCYFCPYFVKDEQDLIQHLLLHGITDPEDYIAKAMGCRSPLPEHSVVHETMVAASGSTKRHKCHECPYETNSKSQFMYHEQFHRSTSAETPYKCPECNYSVSKRHLLHQHLRVHGIFAKKNETEAELEASTSKADKSDSFSEEIPFVWVSARNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCLGFENSEVIIYKCLECKFTCDNAGRLAEHSKKHGLLYGRIYSTVDEDIPDEDQITRLRRVIELEKSAVDEDSTEENAFCDSKEIKILYFCQKCPARYFTESELKSHEKFHDLSNSNKCKNCEFSVLDETDLVAHLSVHSDEHHIRTNMLKFIHNSHSLHREPRLEASRHSDSSDVSWSVAVNYKSNENTEPQHKKTLETKHTPKQYRCKECPAKFFKSSALTYHMGLHGGEGEHKCKKCSYAVKNVGNLAKHEILHENDIKPANCEYESGDDLDFKNIPLSGTDLFQRKTEAQKRVLTDKDKLVRPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERMKGSNGDPESQEEVKQEESADNIKLAIKTMPKGTPKTDFQQFSIRDQQTLRLLQLRRSMNNGGKDATTSETSPVKERKMHMCLLCPYTNQRQDALSNHYRRHDETDILHGGSHKCCYCDLVVVQSHFLREHLKTHFNFNKILTPECFVANDDVSFMISKVDEECEPVDLKLDMKNKILSCNDEKMFVKIKTGELVVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220230;
- 90% Identity
- -
- 80% Identity
- -