Cv-a017616.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829907.1:7528168-7535183[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.5 1.1e+02 4.0 0.4 1 23 54 77 54 77 0.95 2 21 2 1.4e+02 3.6 4.6 1 23 84 107 84 107 0.97 3 21 4.6 3.2e+02 2.5 3.9 1 23 180 202 180 202 0.97 4 21 0.0018 0.12 13.3 1.0 2 23 208 229 207 229 0.97 5 21 6.9 4.8e+02 2.0 1.4 1 23 235 257 235 258 0.94 6 21 0.2 14 6.8 2.9 2 22 491 511 490 511 0.95 7 21 5.2 3.6e+02 2.4 0.4 1 20 607 626 607 629 0.70 8 21 0.57 39 5.4 0.4 2 23 762 783 761 783 0.96 9 21 0.016 1.1 10.3 1.7 2 23 858 879 858 879 0.96 10 21 0.032 2.2 9.3 0.5 1 23 887 909 887 909 0.97 11 21 0.24 17 6.5 5.4 1 23 947 969 947 969 0.95 12 21 0.00025 0.017 15.9 4.0 1 23 978 1000 978 1000 0.99 13 21 0.27 18 6.4 2.1 1 23 1080 1102 1080 1102 0.98 14 21 0.0039 0.27 12.2 1.5 1 23 1155 1177 1155 1177 0.97 15 21 0.049 3.4 8.7 0.2 2 23 1184 1205 1183 1205 0.97 16 21 0.0026 0.18 12.8 0.8 1 23 1273 1295 1273 1295 0.96 17 21 0.015 1 10.4 0.9 1 23 1301 1323 1301 1323 0.95 18 21 0.007 0.49 11.4 2.6 1 23 1414 1436 1414 1436 0.97 19 21 0.00018 0.012 16.4 1.4 1 23 1442 1464 1442 1464 0.99 20 21 2.5 1.7e+02 3.4 1.6 1 23 1554 1576 1554 1576 0.95 21 21 0.0049 0.34 11.9 5.2 1 23 1589 1611 1589 1611 0.98
Sequence Information
- Coding Sequence
- ATGCTACAGCAGATGTCCTCGTCGCTGAGCGCGCAAGTCGGCGAGGTTACTACTATTGCGCGCCCGTTCGAAGGTCGCTTCTCGGTTGACGTTTCTTCGGAAGCTTCATCTGACGCGACGGAGGAATCAGAACTTCCGCAGTGCAAAATAAGAAGGAACTATAACTGTGCTAAGTGCACGTATAATACGCAAAATCCGCGCGCATATCTCGTACACACGCGAGACGTTCACTTTGgacgatttaaaatatatgagtGCCGCCACTGCATTTATGCATCGAGACATCAGCAGAAACTCTTGAGACACACCAAAATGGTCCACGGGACACCGTCAGCGGCGAGTTCTTCGAGTATTAAAGTGGAGTTAGAGCCCGACGCCGGTCTTAATGAGAGCCCACCCGATAATATGGAAGATTTGTTAGAAGAGATCGAGGAATGCGACGATCAAGACATGGACGTCGACGAGGGCGAGCGCACGGAAGATGCGGAGCTCGCCACCAGGAACACCCCTGGAATGCCGAAAGGAAAAGGAAAGTTTTTTTCCTGCGATAAATGCAACTACGTGACCCACATCAAAGCGAGATACACCAAACACGTAAAATACCATTCTATGCCGATGATCAAATGCACAATGTGCGATTTCCGCACGCCATACAAATGGAATTTGGATCGTCACATGAAGAACCACGGAGGGAACGGCAGCTTCGTGTGTTCGAGGTGTACTTTTACGGCGGACATCAAGCAGAGCCTGACGGTGCACGAGATGAACCACCACACGCCGCCCGTGGGGCAGGCGGTGCCGAGCCGGCGCCGCAACCGGGTGGGAGCCAGCGACATCACGTCCGCGGAGCTATCCATAGTGAAGGAGGAGGAAGGGAGCGGCGACTCGCGCTGCTCGCAGCTCTCGGACTTGATGGGGCAGTACGCGGAAAGAGAAATTGTGAGCTGTAATAGTGATTCCAATGACGCAGCGCCATCGCAGGTCAACCCGAGCCGAGATGGAAGCCTGTCTGCACAGTGTACTCCCGGCCAAATGTCCCCTAGCTCGGGAAATGAAGAcagatcaaacaaacaaaacaaaaaagctCCCAGACCAATCCCCCAGCTGATTCCTCTAAATACCTCAACCCCTAATCAAAACAAGACATCGGGTGAACCGCCAGCGAAGAAATTCAAGGAATCTACAACTTTAGACCTAACTGCAAAGTTTGATATCCTGCCAGGAGACATCTCAGTAACACCCGTAAATAACACACCAAAAGAGTCTGTAGTtcgaaagaaaaataattcctTTTTCGACAAGTTGAAAGAAAGATTGCTGACGGAAACAGGCGAGGAAGGTTCACTGAAATGTAAAAACTGCGGTTTCGAGAGCAAATGTCTATCGGAACATTCCGTACACGAGAAGAACTGCGCAGCGCAAGCTAGTCGCGTGACGATGACTTCCGCACATTCCAGCATGGGCTCTACCCGCTGCCAAAACTGCAGGCACAGGTGCAAATCTAGTGCAGATCTCTACGTGCACATGTTGACTTGCGGCAAGAAAGAAAGTACTCCCAATACGACGGATACTAAACCGGACGCCGCAGAAGCCTCTACATCAAGTTACGATAAAGACACGGAACCACATCCTATGGAAAACGTTGTTTTTGTTTGGAATAACATCGACCAAGGCAATAAATTTGAGCGGCCTCTCGATATCAACATTAATGATGACTCAACTATGCCAGAGTCGCATAGAAATTACGATGCTGAAATCGTAGATGAAAATGAGGGCATGAATTTATCACCCAATAGTCTGAGTCTAggaaaaaatgtttacaaatgCCCTGATTGCAAATTTTGGGCGGCTACTGCGTCGAGATTCCATGTCCATATTGTAGGACATCTGAACAAAAAGCCATTTGAATGTTCTCTTTGCAAATACAAGTCAAATTGGCGTTGGGATATCACTAAGCATATTAAATTGAAGTCCGCTAGAGATCCGGAACACAATGACGCAAAAGTGCTGATGACTGATGAAACTGGGCGCCGTAACTAtagtaaatataacaaattccTGGCCGTACCAGTCCTAAACGAAAACGGTGAAAATGAATTTCATTACATCGACCAAAATACAACTGTAGATGCAACAATGGAGTTAGATGAGTCAATGAACGATTCTGGAGAAATTATGAATACACCGTATGATATACCATTGAACTTGCAAACTCAATTTGGTGATCAACTAAACTCTATGGATACCGCACCACTAGATAGGAAACCTAAGAAGACCTTATGGAAATGTAAAAAATGCAACTACAAGGACCCGTCGAAGGAGGCTCTATTGGAACACGTGAGGCAGCACTCGAAGGACGGCACCTTGGACGATCCTCAAGCTAAGCAGCCAGACGCGCCCGACCCCGCTGACCTCGCCTATCGCTGCGGCCACTGCAATCAATTGTCCAATTGGAAACACGTAATACAGAGACACTGCCGCCTAAAGCACGACGGAATAATAAAAGTGATCACAACAGTTAGACCTAAACCAGAACCAGCGCCTCCGATGAGCGCAGAAACCTTCAACAATTACTGCTCTAAATGCCCATTCAGGACCAACGATAAGAAACAATTGCAAGAGCACTTACAGCAACATCAACCTTCGTCGCAGTCGATCTTCAAATGCTACTTCTGTCCATACTTCGTCAAAGACGAGCAAGACTTAATCCAACATTTGTTACTCCACGGCATTACAGACCCAGAAGATTACATTTCAAAAGCGATGGGTTGCAAATCACCTTTGCCTGATAGTGGTGGGAATATGCATGACGGAACTTCTGCTAGTGGTAATAAACGCCACAAATGTCACGAATGTCCCTATGAAACTAACAGCAAATCTCAATATATGTATCACGAGCAATTCCACCGCTCGACTTCAGCTGAAACCCCCTACAAATGCCCTGAATGCAACTACAGTGTGTCTAAGCGACATCTTTTACATCAGCATTTGAGAGTACACGGGATTTTCTCCAAAAAGAATGAAAGCGAGGCTGAACTTGAAGCATCAACATCTCACAGAAACGATAGATCCAATAGTTTTAGTGACGAAATTCCTTTTGTATGGGTTTCAGCGCGAAACgaatttcataaaatgttcAAATGTCGCTATTGTTCATACGTAAACTCGCAGAAATGTAAAATACCAAATCACGAGAAGATACATTGTCTCGGATTCGAAAACAGCGAAGTCATAATATACAAATGTTTGGAATGTAAATTCACGTGTGATAATGCCGCGAGGTTGGCGGAACATTCCAAAAAGCATGGCCTCCTGTATGGCCGCATTTACAGCTACGTCGACGAAGACGTTCCCGATGAAGATCAAATATCTCGGTTACGTAGAGTTATTGAACTGGAAAAGACCGAAGATTCCGTTTCAGAAGACAAACCAATCAGTGATTGCAgggaaattaaaattttatattattgccAAAAGTGTCCAGCACGATATTTTACTGAGAGCGAATTAAAGGCACATACAAAGTTTCATGATTTGTCGCATGGAAATAAGTGCAAAAACTGTGAATTTTCAGTTCCGGATGAAGCTGAACTTATGACCCACCAGACTGTTCATTCAGATGAACACAACATACGAACCAATATGCtcaaatttatacataattcaCATTCACTTCATAAGGAGCCGCGTTTGGAATCAAATCGCATTTCTGAAACATCTGAAGTTACTTGGTCAGTTGCTGTCAACTACAAATGTAATGATAATATCGATCCTTTGCCAAAGAAAACTGGTGAAACAAAACACACACCTAAGCAATACCGATGCAAGGAATGTCCAGCtaaatttttcaaaacttCAGCTCTTACGTATCATATGGGACTTCACGGTGGCGACGGTGACCATAAATGTAAGAAATGCACATACGCCGTAAAGAACGTCGGTAATTTGGCTAAACACGAAATATTACATGAAAATGAAAGTAATAAATCACCGAATCATGAATACGAATCTGGTGAtgatttagattttaaaaatgttcctCTATCAGGTACAGACCTATTTCAAAGAAAGACTGAAGCTCAGAAAAGAGTACTGACTGACAAAGACAAATTGGTTAAACCTAATGATCACTTTCCGCCTGTACTTCAAGCTGACCCCCAGTTCGGATACCTGATGCATGGTAATCCTGAATTCATCTACCCCACTTACCTGAAAAACGGACGACAAAAGGAAAAGCGATACAAATGTCATAAGTGTCCTTCCGCTTTCGAAAAGCGcgaacaatacaaaattcattTATCGCTTCACGGATCTAAACAAAGATATAAATGTGAGTTGTGCGACTATTCGGTCAAATATTACGCAAACTATGTTCAACACATGCGTAAGCATCAAATGAACGACGAGGCTCAAGCCGAAAGACTGAAAGGAGTTAACGGAGAAACGGAAATCCAGGAAGATGTGAAACTAGAAGATGGCACAGATAACATTAAACTAGCGATCAAAACTATGCCTAAAGGAACACCGAAATCTGATTTCCAACAGTTTTCTATCAGAGATCAACAAACTCTTAGGCTGTTGCAGATACGGAGATCAATGAATAATGGCGGTAAAGATTTAAACCCTACAGAAACTTCGCCAGCTAAAGAGCGCAAAATGCATATGTGCCTTCTATGCCCCTATACGAATCAACGACTGGATGCTTTAAGCAATCACTACAGAAGACATGACGATAATGATATATTGAACTGTCACAACAACGGCCACAAGTGTTCTCACTGTGACTTAGTTGTTGTGCAATCTCATTTCTTACGGGAGCATATAAAAACTCACTTCAATTTCAACAAATCTCTTTTACCAGATTGTTTCGTAGCTAATGACGAtgtcagttttataataacgaAAGTGGATGAGGAACCCGATGTACCTCTTGATCTCAAattagaaaagaaaaatatcatAACGTGCAATGACGAAAagatatttgtaaaaataaagacaGGGGAACTTGTGGTTGAATAA
- Protein Sequence
- MLQQMSSSLSAQVGEVTTIARPFEGRFSVDVSSEASSDATEESELPQCKIRRNYNCAKCTYNTQNPRAYLVHTRDVHFGRFKIYECRHCIYASRHQQKLLRHTKMVHGTPSAASSSSIKVELEPDAGLNESPPDNMEDLLEEIEECDDQDMDVDEGERTEDAELATRNTPGMPKGKGKFFSCDKCNYVTHIKARYTKHVKYHSMPMIKCTMCDFRTPYKWNLDRHMKNHGGNGSFVCSRCTFTADIKQSLTVHEMNHHTPPVGQAVPSRRRNRVGASDITSAELSIVKEEEGSGDSRCSQLSDLMGQYAEREIVSCNSDSNDAAPSQVNPSRDGSLSAQCTPGQMSPSSGNEDRSNKQNKKAPRPIPQLIPLNTSTPNQNKTSGEPPAKKFKESTTLDLTAKFDILPGDISVTPVNNTPKESVVRKKNNSFFDKLKERLLTETGEEGSLKCKNCGFESKCLSEHSVHEKNCAAQASRVTMTSAHSSMGSTRCQNCRHRCKSSADLYVHMLTCGKKESTPNTTDTKPDAAEASTSSYDKDTEPHPMENVVFVWNNIDQGNKFERPLDININDDSTMPESHRNYDAEIVDENEGMNLSPNSLSLGKNVYKCPDCKFWAATASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAVPVLNENGENEFHYIDQNTTVDATMELDESMNDSGEIMNTPYDIPLNLQTQFGDQLNSMDTAPLDRKPKKTLWKCKKCNYKDPSKEALLEHVRQHSKDGTLDDPQAKQPDAPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGIIKVITTVRPKPEPAPPMSAETFNNYCSKCPFRTNDKKQLQEHLQQHQPSSQSIFKCYFCPYFVKDEQDLIQHLLLHGITDPEDYISKAMGCKSPLPDSGGNMHDGTSASGNKRHKCHECPYETNSKSQYMYHEQFHRSTSAETPYKCPECNYSVSKRHLLHQHLRVHGIFSKKNESEAELEASTSHRNDRSNSFSDEIPFVWVSARNEFHKMFKCRYCSYVNSQKCKIPNHEKIHCLGFENSEVIIYKCLECKFTCDNAARLAEHSKKHGLLYGRIYSYVDEDVPDEDQISRLRRVIELEKTEDSVSEDKPISDCREIKILYYCQKCPARYFTESELKAHTKFHDLSHGNKCKNCEFSVPDEAELMTHQTVHSDEHNIRTNMLKFIHNSHSLHKEPRLESNRISETSEVTWSVAVNYKCNDNIDPLPKKTGETKHTPKQYRCKECPAKFFKTSALTYHMGLHGGDGDHKCKKCTYAVKNVGNLAKHEILHENESNKSPNHEYESGDDLDFKNVPLSGTDLFQRKTEAQKRVLTDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERLKGVNGETEIQEDVKLEDGTDNIKLAIKTMPKGTPKSDFQQFSIRDQQTLRLLQIRRSMNNGGKDLNPTETSPAKERKMHMCLLCPYTNQRLDALSNHYRRHDDNDILNCHNNGHKCSHCDLVVVQSHFLREHIKTHFNFNKSLLPDCFVANDDVSFIITKVDEEPDVPLDLKLEKKNIITCNDEKIFVKIKTGELVVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220230;
- 90% Identity
- -
- 80% Identity
- -