Paff009348.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Perizoma affinitatum
Gene Symbol
-
Assembly
GCA_961405105.1
Location
OY560192.1:11955175-11966175[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.082 5.3 8.2 3.9 1 23 382 405 382 405 0.91
2 30 0.00079 0.051 14.5 0.5 3 22 438 457 436 457 0.93
3 30 0.00016 0.01 16.7 0.3 2 23 492 514 492 514 0.97
4 30 0.0007 0.046 14.7 0.8 1 23 562 585 562 585 0.95
5 30 0.12 7.6 7.7 0.1 1 23 607 629 607 629 0.96
6 30 0.0052 0.33 11.9 3.0 2 23 678 699 677 699 0.96
7 30 0.00026 0.017 16.0 2.0 2 23 745 767 745 767 0.97
8 30 7.7e-06 0.0005 20.8 1.3 1 23 817 840 817 840 0.97
9 30 0.00064 0.042 14.8 0.1 1 23 895 917 895 917 0.97
10 30 0.0018 0.12 13.4 6.6 1 23 928 950 928 950 0.97
11 30 0.08 5.2 8.2 1.1 2 23 962 983 961 983 0.96
12 30 0.0054 0.35 11.9 0.9 1 23 993 1015 993 1015 0.98
13 30 1.6 1e+02 4.1 4.1 1 21 1044 1064 1044 1066 0.86
14 30 0.0068 0.44 11.6 7.8 1 23 1077 1099 1077 1099 0.98
15 30 0.004 0.26 12.3 1.2 1 23 1107 1129 1107 1129 0.96
16 30 0.00033 0.022 15.7 0.2 2 23 1149 1171 1148 1171 0.97
17 30 0.018 1.2 10.2 2.4 1 23 1189 1211 1189 1211 0.97
18 30 0.37 24 6.1 0.8 2 23 1252 1274 1251 1274 0.92
19 30 0.0045 0.29 12.1 0.2 2 23 1297 1318 1296 1318 0.95
20 30 0.45 29 5.8 0.3 2 20 1322 1340 1321 1341 0.92
21 30 0.16 10 7.2 1.6 2 23 1361 1383 1360 1383 0.96
22 30 0.015 1 10.4 0.2 2 23 1399 1420 1398 1420 0.91
23 30 0.49 32 5.7 2.7 5 23 1430 1448 1428 1448 0.90
24 30 0.0085 0.55 11.3 0.8 2 23 1459 1481 1458 1481 0.95
25 30 6.6 4.3e+02 2.2 6.2 2 23 1498 1516 1498 1516 0.86
26 30 1.7 1.1e+02 4.0 2.1 2 21 1520 1539 1519 1540 0.93
27 30 0.57 37 5.5 2.9 2 23 1588 1609 1587 1609 0.93
28 30 0.0048 0.31 12.0 0.3 2 23 1620 1642 1619 1642 0.97
29 30 2.2 1.4e+02 3.7 0.6 2 23 1658 1676 1658 1676 0.79
30 30 0.24 16 6.7 3.7 2 21 1680 1699 1679 1700 0.94

Sequence Information

Coding Sequence
ATGGAAGGAAAAATAGATGAAGTGTGCCAGATGATGGATGATAGACGGATTGATGTTCTTTGTGTGAATGAGACAAAGCGGAAAGGTTGTGACACCACCAATCACGGACCCTACACAGCATACTGGTCTGGAGTATCTGATAATGACAGAGCTTGCCAGGGAGTAGGTGTTATACTTTCCGCGCGAATGACTGAGTGTGTGAACGAGTTTGAATGCGTGAGTGCGCGATTGCTATGGATTAGGATTAAAGTTGGATTAACGCGTATCTTTGTTGTAGGGGTATATGCTCCTGTTGACTTGGGTACGAGTACATCGAAGAAAGAGATGAAAGAAAGAGAGGGGTTTTGGGAGGATTTGAGGGATGTTTTGACTAGCTGCAAAGATAATGAAAAGTTAATAATGCTAGGTGATTTTAATGGTTGGGTGGGTGTGAAGCGTGATGGATTTGAGAGAGTTCTGAGAATGTATGGTGATGAACGAGTGAATGAGAATGGTAAACATTTGCTAGATATATGCTTGGAATGGAAACTTTGTGTGACAAACACCATGTTTGAACACAAAAGGATCCATATGTACACTCGAGAAGCGAAGAATGTCAGAAGAAGTATGATTGACTTCGTGATAGTAgatgaaagagtgagaaagaatgTTCTAGACACAAGGGTGTATGATGGAGATGGACTACCAGATAAAGTATGCTCAGAATGCATACAGAAACTCAGCAGCGCCTACATATTCAAGCAGCAGTGCGAGAGGTCCGACCAGGAGCTGCGGCGGAACTACGTCCCGCCACCAGgctTCAGCATCAGCCCACCGCCAGCAACACCAACTAACCGGCAAAGCAGCGATTCCGCCTTCTCTACTCACACAGACAGCTCAAACTTAAAGTCATCATCATTCACTGAAAACAAAGTTACACCAGTCAGCAGGAACAGAAAGAGAAGTGCCGAAAGCGACAATGCTTCTGTCGGCAGCCGGTCTCAGGACTACAGCAGACCCAGCAGCTCCAAGCGGGTGGAGGAACTCAGAAAATCTCAAAAAACAAAACGCTCGCGGTACTCCGCTGATTCTGATTACGAAGATAACGAAGCATCTAGCTTCGTAAATGAAACGGACTCAGATGAACCACTCCTCAAAAATGAACACAGCTGTCCTCACTGCCCTAAGACTTTCAAATGGCTGAAGAGCATGAAGATACATATAGCTCATATGCACACGGGGAAGAAGGCCAGCTCGAGAGCTCCAGGGTTCGCCGTGAACATTCCGATACAAAGCATTGAAACAATCGACAGCGATGACGATCAGGTAAACTGCGATAAATGTGGCAAGAATTTCAAACTAAAGATTATGTTGAAGCGTCATCAGGAGACATGCCAGAAGTCACCAGCTAAACCCCTACCGAAATCGCCAATGAAAGAGTTGATGATAGCTCTAGAGCCAATAGACGCTGTGCAGCAACGCTCGAAGAAACCAACATGTGAATACTGCACGGCACAGTTTAAAACCGTCGATAACTTAGAGAAACATCTCAGAGTGGTTCACGCTGCGACGCGCAAAAAAGATAAAGCAGAAAACGAACCTATTGGACCTCTAATATGCATCTATTGCAGTAAAGATTTCGAAGATTACTATGTGTACAGCTCGCATTTCAACGGGTGCCCAATGAAAGAGAATCTGTCGTTGTTTCAATGTCCCATGTGTCCGAAGCAATGCACTCGAGCCAGTGCTTACGTGAGCCATGTGAAGGGTTCTCACTACTTCGGCTCTAGTCCAAAAGTGGAGATAACTTCACCTGGACAGAGTCAAGTAGGTCAGGCGTTCGAATGCCGTATGTGTAGTAAGAAGATGGCCACACAAGCGTTGCTGATCACGCACTTGGCCGCACACATGTCTAATATTGACGAAGATGACAACGCAACTGCTGATGATTTTTATTCAAGAGATGATACTGTAGCTGATGATTCAATATCGGTTCAGTCAGCTCAAAGTTCACAAGTCTCGCAGGGCTCGCAGCCCTATTCGGGCCCCCAAAAATGTCGTTTCTGTGACAAAGAgttcaaatacaaaaaatccCTATTATCACACGAGCTAAAACATACCGAAGAAAACGTGCGTATTAAAAACGAACCACCTGATAAACCAGTACATGCAGACTTACTCACAGAAACAAACCAGGAGTTTGCCAAAGAGTTCGACTCGGAATCTAGTCAAGACGAAGGGGAAGAAGACAATACGTGCGATATTTGCGAGAAGCAATTTTCTTACAAACGGCTGCTGATACAACACAAGCGCACAAAACATACCATGGTAGCTGGCATGAAACGAGCTAAAATAAGCCTTAAAGACTGCTCCGTGAGATGTCTGATATGTGAGGAGGAGATGAAAGTAAGCGCTATCAATGAGCACAACCAGAAGCATATCTCGGTGAATATACGGCCGAGGAATATTTACACTTGCGCTGAGTGTGGGCAGAAATTTAAGAGCTGCAGCAACCTAGCCAATCACATCAAACTGGTTCACAGGTTGAAACAATTAGAAGTGCCGAAGCAGTTTGCTGGCGTGGACATGGCGGATTTTTGTGAGGTCGTTGTGACAAAGGCGGAACCCCTGGATGTATCCCAGAGTCACAACGGCTTTGgagagGTTCCGCTGAAAGCAGCGCCGACGGTAAACCTTACTGGTTTCACGTGTCCCATCTGTGGGAAGAAGATGCCCACTCTCATATCGCTCAAACGTCACGTCAACTGGCACTCGTTTGTTGGAAACAATTTGGAATCGAAGCATGAGTGTTTCGTCTGTAAGGAGACCTTCAAATTCAAAGGCCACTTTAAGATCCACATGCGTCAGCACTTCAACGACACCAACCTTGACCCCGCCCTGCTCACCTGCTCTATCTGTCAGCGCAAGAGCAAGCATCTACGCGCGGCGCAGGCACACATGAACTGGCACAAACAAACCCGCTTCCAGACCAAAGACTACCAGTGTTCAATCTGCAAACGGGTCTTCCAGTACCGACGCGTCTACCTCTCACACATGGCCATACATTACAAGAAAGGAGAAAGCGGACAGAATACCATAGTCGGGGATATGGTCTCGAGTACCCAAGACCGCGTCATGTTTGACGGGACTTTCACCTGCCAGCTTTGCGGTAAAGTATGTGATTCAGAGAATTCCCTAAAATGCCACTCCAGTTGGCACAGATCAAAGACGCTGCTGTACGGAGCGCGCCACGAATGCCAGATGTGCCATCTCCAGTTCACCAATAAGCGGCACCTGGAGCTCCATACTCGCTCGCATTACGAAGACCCGAACGGTGAGTTCAAATGCAATGTATGCGGTAAAGGATTCATAGATGAGGAATACCACAGACGACACGTGAAGGGACATAACTTCGACCACCAGTCCCACAAGAAGAGAATTGAAAACCTGCGAAAGGGTAAAGTTAAATGTCCCATCTGTAACCGATACTACCCTGATCTAGTGAAGCTGATCCGACACCTACGACGCACACATCCGGAGAGCAAGATGATTAAAGAGGATCCCGATGCACCTCCGCAGAAGTATTACTCCTGCAAGCTCTGCGCCAAGTCGTTCTACGACGAGAAACGATTTAAAAGGCACGAGGAGTCGCATCTACGTAAGCCCAGCTTCCTCAAATGCAAATTCTGCGGACATAAAACCTCCTCCATGAAAGCTCACCACATTCACATTAAAACAAAGCATATGACGAAGAAGTATGTGGAGAATCCTTTGAAATGTACTCAATGCGATGAGGTTTTCATATGGGGGTATGCTTTGCATCATCACTTGCGGGATGTTCACGGGATTAACGAAGAGTGGATCGCCGAGCGGACCGAGGCGACGCTAGAAGGCCCGCTGAAGGACCTTCAATGCTCGGTCTGCCTCAAGGTCCTTGCGAGTAAAGGCAACTTCGAGCGTCATATCgattaccacaacaccctgcGTTGCAACTACTGCTTCGAATACTTCAGCACGCTACGTTTCCTCGAAGGTCACCTTGCTTTCACCTGTGACAAAAAGAAATTGATTGGCGAGGCTGATCCGCACCCGAAGCGAGTCAAATGTGAAATATGTTACAAAGCGTTTAGCTTGCAAGTCAAGTTAGACTGTCATCTCAGAACTCAGCACagtataaaagtaaatagaGAACAGGGCGCTGGTAAACAAGAGCTTGTTTGCGACTATTGCTTCAAAGTGTTCGAGAACGAAAGTGCGCTGAGCGGACACAAAGTGTACCATCGAACCATCGGATACTTCGGCTGCATTTACTGCCCGAGGAAATTCAACACTCAGACAGCTTACAGGAAGCACAAGGTTCACCACTTGTATACACATAACGTCGAGAACCCGACCAAATGCGAGCATTGCGACGAGACATTCATCCTGTTCAAAGAAATGATAGACCATATGAGGGACGTTCACGGCGACGATAAAGAATGGATCGTCATGCCGAAAGATTCCATCGAAGAGACGTGCACAATCTGtcacaaaacatttttcaatctGCACAAGCACTTGGACTATCATGAGGAGAACAAGTGCAAGAAATGTCAGGAATATTTCTTCTCGAGCGTAGATTTCGATAACCATCTATGCGCCATCGAGAGCGATAGTGAGGAAGCCGCGGGCGTCGTGAACCCTAGCATGCCATACGAGGAGTGCACATTCTGCTTCAAGCCAATCACTAAGAAAGACTCCAAGAAGAAACATGACATTTTACATCGCACTTCGGGAGCCATATCGTGTCGATTCTGCCATCTGAAGTTCAAAACGCTTGATGCGTTCAATATACACTCGTTTTCTCACCGTAGCAGAAAATACAACAAGAAGCCGATTAAATGCCGCGTTTGCAAGGAGCGCTTCGTCAAGTATGGTCCGTTCATAAAACATATGAGGGTAGTGCACAAATGCATGAAGAAAACCCACTACCGCGCGAATGTTAAGCCGGAGCGTTGCGTGATCTGCGGCGAGGAGTTCCCGAACTTGCATAACCACTACCGCGCGCACTTGGCCAATCAGTGCCAGTCCTGCTCGAAGTACTTCACCTCATCAAAGCTCTTTGCTAAACACCAGTGCAATGTTATCGACCAGGAccaaactaaaatatttacttCGGACGAAAACTTGAGCGCGCTCATCAACTCATACACTCCGAGGTACTTGAAGGATGAAGAGAAGTTTTACGGCTACACAGATGATGATGAGGAAGTTGAGACAGATTTACCTCCCGCGTTGACTCAGACTCAAGATCAAAAAGTTCAAAAGGCTATGAACGGTCCGTCGAAACGACCAAAGCCAGTGCAAGACAGCCAAGAGGCCGAATACGAGAGAAACCTGCATATGATGGTACAGTCACCCATTATATCCGACGTATTATCGCTGTTTCAAACTGAGGAGGAAACTCAAAATGACAAGACACAGAGATTCCTAGGGGAGGTTGTCAGTCTGACCGACGATGATGATTCTATGGACATGAACGATGTTTTAGCGCCCATTGTTGTAATTGATGATTAA
Protein Sequence
MEGKIDEVCQMMDDRRIDVLCVNETKRKGCDTTNHGPYTAYWSGVSDNDRACQGVGVILSARMTECVNEFECVSARLLWIRIKVGLTRIFVVGVYAPVDLGTSTSKKEMKEREGFWEDLRDVLTSCKDNEKLIMLGDFNGWVGVKRDGFERVLRMYGDERVNENGKHLLDICLEWKLCVTNTMFEHKRIHMYTREAKNVRRSMIDFVIVDERVRKNVLDTRVYDGDGLPDKVCSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFSISPPPATPTNRQSSDSAFSTHTDSSNLKSSSFTENKVTPVSRNRKRSAESDNASVGSRSQDYSRPSSSKRVEELRKSQKTKRSRYSADSDYEDNEASSFVNETDSDEPLLKNEHSCPHCPKTFKWLKSMKIHIAHMHTGKKASSRAPGFAVNIPIQSIETIDSDDDQVNCDKCGKNFKLKIMLKRHQETCQKSPAKPLPKSPMKELMIALEPIDAVQQRSKKPTCEYCTAQFKTVDNLEKHLRVVHAATRKKDKAENEPIGPLICIYCSKDFEDYYVYSSHFNGCPMKENLSLFQCPMCPKQCTRASAYVSHVKGSHYFGSSPKVEITSPGQSQVGQAFECRMCSKKMATQALLITHLAAHMSNIDEDDNATADDFYSRDDTVADDSISVQSAQSSQVSQGSQPYSGPQKCRFCDKEFKYKKSLLSHELKHTEENVRIKNEPPDKPVHADLLTETNQEFAKEFDSESSQDEGEEDNTCDICEKQFSYKRLLIQHKRTKHTMVAGMKRAKISLKDCSVRCLICEEEMKVSAINEHNQKHISVNIRPRNIYTCAECGQKFKSCSNLANHIKLVHRLKQLEVPKQFAGVDMADFCEVVVTKAEPLDVSQSHNGFGEVPLKAAPTVNLTGFTCPICGKKMPTLISLKRHVNWHSFVGNNLESKHECFVCKETFKFKGHFKIHMRQHFNDTNLDPALLTCSICQRKSKHLRAAQAHMNWHKQTRFQTKDYQCSICKRVFQYRRVYLSHMAIHYKKGESGQNTIVGDMVSSTQDRVMFDGTFTCQLCGKVCDSENSLKCHSSWHRSKTLLYGARHECQMCHLQFTNKRHLELHTRSHYEDPNGEFKCNVCGKGFIDEEYHRRHVKGHNFDHQSHKKRIENLRKGKVKCPICNRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPQKYYSCKLCAKSFYDEKRFKRHEESHLRKPSFLKCKFCGHKTSSMKAHHIHIKTKHMTKKYVENPLKCTQCDEVFIWGYALHHHLRDVHGINEEWIAERTEATLEGPLKDLQCSVCLKVLASKGNFERHIDYHNTLRCNYCFEYFSTLRFLEGHLAFTCDKKKLIGEADPHPKRVKCEICYKAFSLQVKLDCHLRTQHSIKVNREQGAGKQELVCDYCFKVFENESALSGHKVYHRTIGYFGCIYCPRKFNTQTAYRKHKVHHLYTHNVENPTKCEHCDETFILFKEMIDHMRDVHGDDKEWIVMPKDSIEETCTICHKTFFNLHKHLDYHEENKCKKCQEYFFSSVDFDNHLCAIESDSEEAAGVVNPSMPYEECTFCFKPITKKDSKKKHDILHRTSGAISCRFCHLKFKTLDAFNIHSFSHRSRKYNKKPIKCRVCKERFVKYGPFIKHMRVVHKCMKKTHYRANVKPERCVICGEEFPNLHNHYRAHLANQCQSCSKYFTSSKLFAKHQCNVIDQDQTKIFTSDENLSALINSYTPRYLKDEEKFYGYTDDDEEVETDLPPALTQTQDQKVQKAMNGPSKRPKPVQDSQEAEYERNLHMMVQSPIISDVLSLFQTEEETQNDKTQRFLGEVVSLTDDDDSMDMNDVLAPIVVIDD