Prub003625.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plemyria rubiginata
Gene Symbol
-
Assembly
GCA_963576535.1
Location
OY754908.1:2454006-2460812[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 0.059 3.8 8.6 2.8 1 23 198 221 198 221 0.90
2 29 0.0015 0.096 13.7 0.8 3 21 252 270 252 271 0.95
3 29 0.00011 0.0074 17.2 0.4 2 23 305 327 304 327 0.96
4 29 0.0004 0.026 15.4 0.9 1 23 373 396 373 396 0.96
5 29 0.013 0.81 10.7 0.1 1 23 418 440 418 440 0.96
6 29 0.0038 0.25 12.4 3.2 2 23 487 508 487 508 0.97
7 29 0.00023 0.015 16.2 2.0 2 23 555 577 555 577 0.97
8 29 0.00023 0.015 16.2 1.3 1 23 627 650 627 650 0.97
9 29 0.00057 0.037 15.0 0.1 1 23 705 727 705 727 0.97
10 29 0.0014 0.09 13.8 6.6 1 23 738 760 738 760 0.97
11 29 0.56 37 5.5 1.3 2 23 772 793 771 793 0.95
12 29 0.0049 0.31 12.0 0.9 1 23 803 825 803 825 0.98
13 29 0.5 32 5.7 3.5 1 23 854 876 854 876 0.92
14 29 0.006 0.39 11.7 7.8 1 23 887 909 887 909 0.98
15 29 0.002 0.13 13.3 1.2 1 23 917 939 917 939 0.96
16 29 0.0003 0.019 15.9 0.2 2 23 959 981 958 981 0.97
17 29 0.049 3.2 8.9 2.1 1 23 999 1021 999 1021 0.97
18 29 0.26 17 6.6 0.8 2 23 1062 1084 1061 1084 0.90
19 29 0.0041 0.26 12.3 0.2 2 23 1107 1128 1106 1128 0.95
20 29 0.4 26 6.0 0.3 2 20 1132 1150 1131 1151 0.92
21 29 0.24 15 6.7 1.6 2 23 1171 1193 1170 1193 0.96
22 29 0.044 2.8 9.0 0.6 2 23 1209 1230 1208 1230 0.91
23 29 0.17 11 7.2 2.8 5 23 1240 1258 1238 1258 0.94
24 29 0.0037 0.24 12.4 1.3 2 23 1269 1291 1268 1291 0.95
25 29 4.5 2.9e+02 2.7 6.1 2 23 1308 1326 1308 1326 0.89
26 29 0.84 55 5.0 2.1 2 21 1330 1349 1329 1350 0.93
27 29 0.99 64 4.8 1.4 2 23 1398 1419 1397 1419 0.92
28 29 0.002 0.13 13.2 0.6 2 23 1430 1452 1429 1452 0.97
29 29 0.51 33 5.7 3.7 2 21 1490 1509 1489 1510 0.94

Sequence Information

Coding Sequence
ATGGCCCTCAAACTTGGAAAATGCAGGCTCTGTCTCAAACTGGGGGATTTTTACTCCATCTTCACAGCAGATAATGATGTCCAATTGTCCGAGATGGTTATGGATTGTTCCAGGATAAAGGTCTATGATGGAGACGGCCTCCCTGATAAGGTGTGCTCTGAATGCATACAGAAGCTTAGCAGCGCCTATATATTTAAGCAGCAATGTGAAAGGTCTGACCAGGAACTGCGGCGTAACTATGTCCCTCCACCTGGATTCAGTATCAGTCCACCACCACCAATAAACCGACAAAGTAGCGATTCTGCTTTCTCAACTCAAACAGACAGCTCAAACCTTAAGTCCTCCTTCACCGAAAACAAAGTAACGCCCGTCAACCGAAATAGAAAGAGGAGCGTCGAAAGTGACAATGCTTCCGTCGGCAGTCGATCGCAAGACAACAGTCGACCCAGCAGCTCGAAGAGGGTGGAGGAACTGCGGAAGACACAGAGGCCGAAACGGCCGCGCTACTCCGCCGACTCTGACTACGAAGACAATGGAGCCTCCAGTTTCATAAATGAAACAGATTCAGATGAGCCACTCCTCAAAAATGAGCATGCCTGCCCCCACTGCCCGAAAACCTTCAAATGGCTGAAAAGCATGAAGATACACATAGCACATGTACATACAGGAAAGAAGGCGAACTCTCGACAAGAGGTTGCTGTTAATATCCCCGTTAAAAGCATGGACCCGCCAGATGACGATGACCAGATGGGCTGTGAGAAATGTGGGAAAAAGTTCAAACTAAAGATAATGCTAAAACGACATCAAGAATCGTGCCAAATGTCACCAGTTAAACCACAGCCAAAATCCCCCATGAAGGAACTGGTTATTACTCTGGAGCCAATAGACGCCGTGCCACGCTCAAAGAAAACGACTTGCGAGTATTGCACGGCTCAATTCAAAACTGTGGATAACTTGGAGAAGCATCTTAGAGTTGTCCACGCAGCCATACGTAAGAAATCTATAAACGAACCTAAAGGACCTCTAATATGCATCTATTGCCGCAAAGATTTCGGAGATTACTACATCTACAGCTCTCATTTCAACGGATGTCCGATGAAGGAGAATTTGCCTTCTTACGAATGCCCCATGTGTTCCAAGGTATGTAGTCGTGCGAGCGGTTACGTGAACCATGTGAAAAATTCTCACTACTTGACTGCCAGTACCAAAGTAGAGATGCCTTCGCCCAGTACGAGCCAGACGGGCCAGGCGTTCGAGTGTCGCATGTGTAGCAAGAAGCTGGCCACACAGGCGCTGCTGATCACGCACTTGGCCGCGCACATGTCTAATGACGATGAAAATATCAATGTTGAAGATGATGATTTCGATTCGAGAGATGACATAGTAGCTGATGACTCTATATCAGTGCAGTCCGCTCAAAGCTCTCAAGCGTCGCAAGCCTCACAGTCGGGCCCCGCGAAGTGCCGCTTCTGTGACAAAGAGTTCAAGTACAAAAAATCCCTCATGTCACACGAACTGAAACACACTGAAGAGAAAGtaccaataataaaaaacgaGCCCCCAGATAAACTCCCAGATACAGATCTGCTCACAGAGACTAACACACAGTTTTCTAAAGAATTCGACTCTGAATCTAGTCAAGACGAGGGAGACGAAGACAATACGTGCGATATTTGCGAGAAGCAGTTCTCATACAAACGGCTGCTAATCCAGCACAAACGCACGAAACATACGATGGTAGCAGGCATGAAGCGGGCGAAAATTAGCCTTAAAGACTGCTCAGTTAGGTGCCTGATATGCGAGGAGGAGATGAAAGTGAGTGATATCAATGAGCACAATCAGAAGCATATTTCGGTGAATATTCGGCCGAGGAATATTTACACATGTGCCGAGTGCGCGCAAAAGTTCAAAAGCTGTAGCAACTTGGCTAATCACATCAAATTGGTGCACAGGTTGAAGCAGCAAGAGGTGCCAAAGCAATTTGCAGGCGTGGATATGGCGGATTTTTGTGAAGTCGTTGTGACGAAGGCGGAACCCCTGGACGAATCCCAGAGTCACAACGGCTTGGGAGAGGTTCCGCTGAAAGCAGATGCTACGGTCAATCTTAGCGGGTTCACTTGTCCCATCTGTGGGAAGAAAATGCCTACGCTCATATCGCTCAAACGTCATGTCAACTGGCACTCGTTCGTGGGAAACAATTTGGAGTCGAAACATGAATGTTTCGTGTGTAAAGAGaccTTCAAGTTCAAAGGTCATTTCAAGGTCCACATGCGGCAACACTACAGGGACACCAACCTGGATCCGGCGCTGCTGACGTGCTCTATCTGCCAGCGCAAGAGCAAGCACCTCCGCGCTGCGCAGGCGCACACCAACTGGCACAAACAGACGCGCTTCCAGACCAAGGACTACCAGTGCTCCATATGCAAGCGGGTGTTCCAGTACCGGCGTGTATACCTCTCGCACATGGCCATCCACTACAAGAAGGGAGAGAGCGGACAGAACACTATAGTCGGCAATATGGCCGACAATAATCTAGACAAGGCTATTTTCGACGGCACCTTTAGCTGCGAACTCTGCGGCAAGGTCTGCGATTCAGAAAACTCTCTCAAATGCCACACCAGCTGGCATAAATCGAAGACGCTGTTGTACGGAGCGCGGCACGAGTGCCAAATGTGCCATCTGCAGTTCACGAACAAGCGGCACCTGGAGCTTCACACGCGCTCACATTACGAGGACCCGAACGGCGAGTTCAAGTGCAACATTTGCGGGAAGGGATTCATCGACGAGGAGTACCATCGGCGACACGTCAAGGGCCACAACTTCGACCACCAATCTCACAAGAAGAGAATCGAAAATCTGAGAAAGGGCAAAGTGAAGTGTCCGATATGTAATCGGTACTATCCGGATCTGGTGAAGTTGATCCGGCATCTGCGACGCACACATCCGGAGAGCAAGATGATAAAAGAGGACCCAGACGCGCCCCCGCAAAAGTATTACTCGTGCAAGCTTTGCGCCAAGTCCTTCTACGACGAGAAACGATTCAAGAGCCACGAGGAGTCGCATCTACGTAAGCCGAGCTTCCTTAAATGCAAGTTCTGCGGACACAAAACTATCTCCATGAAAGGCCACCACATTCATATAAAGACTAAGCACATGACCAAAAAGTATGTGGATAATCCTTTGAAGTGCACGCAGTGCGATGAAGTATTCGTATGGGGATACGCGCTCCACCATCACTTGCGCGATGTTCACGACATCAACGAAGACTGGATCGCCGAGCGGACGGAGGCGACGCTCGAAGGACCGCTCAAAGATCTGCAATGCTCCGTGTGCTTAAAAGTCCTCGCGAGTAAGGGCAACTTTGAACGGCATATTGACTACCACAACACGCTGCGATGCAACTACTGCTTCGAGTACTTCAGCACGCTACGCTTCCTCGAGGGCCACCTCGCCTTCAGCTGCGACAAGAAGACGCTGATCGGAGACGCAGACCCGCACACGAAGCGCATCAAATGCGAGGTCTGCTACAAGGCGTTCAGCTTGCAAGTCAAGTTGGACTGCCATCTCAGAACTCAGCACAGTATCATAGTGAACAGGGAACAGTCGGCGGGAAAACAAGAGCTGGTTTGCGACTATTGTTTCAAAGTGTTCGAGAATGAGCACGCTCTGAGCGGGCATAAGGTCTATCACCGAACCATCGGCTATTTCGGCTGCATCTACTGTTCGAGGAAATTCAACACTCAAACGGCATACAGAAAGCACAAGAACAATCACATGTATGTTCATAACGTAGATAACCCGACGAAATGCGAGCATTGCGACGAAACCTTCGTGAAGTTCAACGAAATGATATACCACATGCGAGACGTGCACGGCGACGACAAAGAATGGATCGTCATGCCGAAAGACTCCATCGAGGAGACATGCACTATCTGTCACAAGACGTTCTTCAACCTGCACAGGCACTTGGATTATCACGAGGAAAACAAGTGCAAGAAATGTAACGAGTACTTCTTCTCGTCCGTGGATTTCGATAACCATCTTTGCGCTATCGAAAGCGATAATGAAGAAGTCGCGGGTGTGGTCTACCAAGGAATGCCGTACGAGGAATGCACATTCTGCTTCAAGCCGATCACCAAGAAGGATTCCAAGAAGAAACACGACATTCTACATCGCACTTCCGGGGCGATTTCGTGTCGCTTCTGCTATCTGAAGTTTAAAACCCTTGACGCTTTCAATATACACTCGTTCTCTCACCGCAGCCGGAAATATAACAAGAAGCCAATTAAATGCCGCGTCTGCAAGGAGCGTTTCGTGAAGTACGGTCCGTTTATAAAACACATGAGGACAGTCCACAAAACCGCGAAGAAAACCCACTACCGCGCACTCGTTAAACCGGAGCGCTGCGTTATCTGCGGCGGTGAGTTCCCTAACTTACACAACCACTACCGCGCACATTTGGCCAATCAGTGTCAGTTTTGCCTCAAATACTTCACCTCATCAAAACTTTTCGCAAAACACCAGTGCAACGTGATCGATGAAGATAACAGTAAAGTCTTTACTTCAGATGAAAACTTGATGGCGCTCATCAACTCTTACACTCCTAAAGACTTGAAGGACGATGAGAAATTCTATGGTTACACTGACGacgatgaagaggttgaaacaGCCCTACCGTTAGCTATGACTCAGGCTCAAGATAAGAAGGTTATGAACGGCTCTAAGAGTCGGAAGCCAGTGCAGGACAGCCAAGAGGCTGAGTTCGAGAGGAACCTTCACATGATGGTTCAGTCGCCGATCATATCCGATGTGTTATCACTATACCAAACGGAAGAGGAGACCCAAGACAGCAAGATTGAGGGAATGGGAGACATTGTCAATCTCTCCGATGATTCCATGGATATGAACGATATTGAAGCCCCTATCGTTGTTATTGATGATTag
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTADNDVQLSEMVMDCSRIKVYDGDGLPDKVCSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFSISPPPPINRQSSDSAFSTQTDSSNLKSSFTENKVTPVNRNRKRSVESDNASVGSRSQDNSRPSSSKRVEELRKTQRPKRPRYSADSDYEDNGASSFINETDSDEPLLKNEHACPHCPKTFKWLKSMKIHIAHVHTGKKANSRQEVAVNIPVKSMDPPDDDDQMGCEKCGKKFKLKIMLKRHQESCQMSPVKPQPKSPMKELVITLEPIDAVPRSKKTTCEYCTAQFKTVDNLEKHLRVVHAAIRKKSINEPKGPLICIYCRKDFGDYYIYSSHFNGCPMKENLPSYECPMCSKVCSRASGYVNHVKNSHYLTASTKVEMPSPSTSQTGQAFECRMCSKKLATQALLITHLAAHMSNDDENINVEDDDFDSRDDIVADDSISVQSAQSSQASQASQSGPAKCRFCDKEFKYKKSLMSHELKHTEEKVPIIKNEPPDKLPDTDLLTETNTQFSKEFDSESSQDEGDEDNTCDICEKQFSYKRLLIQHKRTKHTMVAGMKRAKISLKDCSVRCLICEEEMKVSDINEHNQKHISVNIRPRNIYTCAECAQKFKSCSNLANHIKLVHRLKQQEVPKQFAGVDMADFCEVVVTKAEPLDESQSHNGLGEVPLKADATVNLSGFTCPICGKKMPTLISLKRHVNWHSFVGNNLESKHECFVCKETFKFKGHFKVHMRQHYRDTNLDPALLTCSICQRKSKHLRAAQAHTNWHKQTRFQTKDYQCSICKRVFQYRRVYLSHMAIHYKKGESGQNTIVGNMADNNLDKAIFDGTFSCELCGKVCDSENSLKCHTSWHKSKTLLYGARHECQMCHLQFTNKRHLELHTRSHYEDPNGEFKCNICGKGFIDEEYHRRHVKGHNFDHQSHKKRIENLRKGKVKCPICNRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPQKYYSCKLCAKSFYDEKRFKSHEESHLRKPSFLKCKFCGHKTISMKGHHIHIKTKHMTKKYVDNPLKCTQCDEVFVWGYALHHHLRDVHDINEDWIAERTEATLEGPLKDLQCSVCLKVLASKGNFERHIDYHNTLRCNYCFEYFSTLRFLEGHLAFSCDKKTLIGDADPHTKRIKCEVCYKAFSLQVKLDCHLRTQHSIIVNREQSAGKQELVCDYCFKVFENEHALSGHKVYHRTIGYFGCIYCSRKFNTQTAYRKHKNNHMYVHNVDNPTKCEHCDETFVKFNEMIYHMRDVHGDDKEWIVMPKDSIEETCTICHKTFFNLHRHLDYHEENKCKKCNEYFFSSVDFDNHLCAIESDNEEVAGVVYQGMPYEECTFCFKPITKKDSKKKHDILHRTSGAISCRFCYLKFKTLDAFNIHSFSHRSRKYNKKPIKCRVCKERFVKYGPFIKHMRTVHKTAKKTHYRALVKPERCVICGGEFPNLHNHYRAHLANQCQFCLKYFTSSKLFAKHQCNVIDEDNSKVFTSDENLMALINSYTPKDLKDDEKFYGYTDDDEEVETALPLAMTQAQDKKVMNGSKSRKPVQDSQEAEFERNLHMMVQSPIISDVLSLYQTEEETQDSKIEGMGDIVNLSDDSMDMNDIEAPIVVIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01170802;
90% Identity
iTF_00737691;
80% Identity
-