Vcam015010.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venusia cambrica
Gene Symbol
-
Assembly
GCA_951394065.1
Location
OX596051.1:5358140-5372184[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 0.022 1.7 9.9 2.2 1 23 194 217 194 217 0.91
2 28 0.00015 0.012 16.7 0.7 3 22 251 270 249 270 0.93
3 28 0.0011 0.088 14.0 0.5 2 23 305 327 305 327 0.97
4 28 0.0033 0.25 12.5 0.6 1 23 375 398 375 398 0.96
5 28 0.0051 0.39 11.9 0.2 1 23 428 450 428 450 0.98
6 28 0.0023 0.18 13.0 1.7 2 23 496 517 495 517 0.97
7 28 0.00022 0.017 16.2 2.0 2 23 564 586 564 586 0.97
8 28 0.00018 0.014 16.5 2.4 1 23 636 659 636 659 0.97
9 28 0.00031 0.024 15.7 0.1 1 23 714 736 714 736 0.97
10 28 0.0015 0.11 13.6 7.2 1 23 747 769 747 769 0.98
11 28 0.059 4.5 8.6 1.1 2 23 781 802 780 802 0.96
12 28 0.0096 0.74 11.0 2.5 1 23 812 834 812 834 0.98
13 28 0.3 23 6.3 4.2 1 23 863 885 863 885 0.95
14 28 0.0033 0.25 12.5 5.5 1 23 896 918 896 918 0.98
15 28 0.0035 0.27 12.4 1.2 1 23 926 948 926 948 0.96
16 28 0.00013 0.01 16.9 0.3 2 23 968 990 967 990 0.97
17 28 0.014 1.1 10.5 1.5 1 23 1008 1030 1008 1030 0.96
18 28 0.31 24 6.3 0.8 2 23 1071 1093 1070 1093 0.92
19 28 0.0022 0.17 13.1 0.2 2 23 1116 1137 1115 1137 0.95
20 28 0.18 14 7.1 0.2 2 20 1141 1159 1140 1160 0.92
21 28 0.14 11 7.4 1.6 2 23 1180 1202 1179 1202 0.96
22 28 0.072 5.6 8.3 0.8 2 23 1218 1239 1217 1239 0.91
23 28 0.16 13 7.2 2.8 5 23 1249 1267 1247 1267 0.94
24 28 0.00082 0.063 14.4 1.7 1 23 1277 1300 1277 1300 0.97
25 28 1.5 1.1e+02 4.2 1.3 2 15 1317 1327 1317 1335 0.76
26 28 0.19 15 6.9 2.2 2 23 1407 1428 1406 1428 0.94
27 28 0.0066 0.51 11.5 0.2 2 23 1439 1461 1438 1461 0.97
28 28 0.22 17 6.8 3.4 2 20 1499 1517 1498 1519 0.94

Sequence Information

Coding Sequence
ATGGCCCTCAAACTTGGAAAATGCAGGCTCTGTCTCAAACTCGGGGACTTTTACTCCATCTTCACAGCGGACAATGATATGCAGCTATCCGAAATGGTTATGGATTGTTCCAAgataaaggtCTATGATGGAGATGGGTTACCTGATAAAATATGCTCAGAATGCATACAAAAACTTAGCAGTGCCTACATATTCAAGCAGCAATGCGAGCGATCTGACCAGGAACTGCGGCGAAACTACGTCCCACCACCCGgaTTCAGTATCAGCCCACCACCTCTCACAAATCGACAAAGCAGTGACTCCGCCTTTTCAACTCTAACAGACAGCTCCAACCTTAAGTCATCCTTCATAGAAAACAAAGTGACTCCTGTTAGCAGAAACAGGAAACGAAGCATCGAAAGCGATGGGAGCCGTTCACAGGAATACAACAAACCCAGTAGTCTGAAGCGAGTTGAAGAACTCCGGAAATCACAAAAACCAAAACGACCACGGTACTCCGCCGATTCCGACTATGAAGACAATGGAGCTTCCAGTTTTGTCAACGAAACAGACTCTGACGAACCACTCTTCAAAAACGAACACCCCTGTCCTCACTGCCCTAAGACATTTAAATGGGGGAAGAGTCTGAAGATTCATATCGCTCATATACACACCGGTAAGAAAGGCAAGCAAGGGCAAGCCGTCAACATCCCTATAAGGAGCGCTGTGACACCATCGCCGGAGCAAAGTTGTGATGATGATCAAGTTAACTGCAACAAATGCGGAAAAACCTTCAAACTGAAGATCATGCTGAAACGCCACCAGGAAACATGCCGCATGTCACCCGTCAAAACCCCGACAACATCACCCATGAAGGAACTCGTGATAACCTTAGAACCGATAGACGCCGTGCCGCAACGCGCGAAGAAACCAACTTGCCAGTACTGCACTGCACAGTTTAAAACGATCGACAACTTGGATAAACATCTGAGAGTAGTGCACGCGGCATATCGCAAAAAAGAAAAAGCCGAAACCCTACAAAAGGGTCCTCTAATATGCATTTATTGCTCCAAAGATTTCAATGATTACTACATCTACAGCTCGCACTTCAATGGGTGTCCGATGAAGGAGAACCTGACCTCATTCCAATGTCCCATGTGCCCGAAGGTCGTCAACCGAGTTAATCATTATGTGAACCATGTAAAGAATCTTCACTACTACTTGAGCTCTGGTCCCAAAGTGGAGCCGCCTTCTCCTGGCCAGAGCGCGGCATTAGATGCGATGGAGGTGGCGGGCCAGCCTTTCGAGTGCCGCATGTGCAGTAAGAAGATGACCACACAAGCACTGCTCATTGCGCACTTGGCCACACATATGTCCGGAGAAGGCGATAATGTCGATGCTGGCGATACTGATGACTTTGATTCaagAGATGACACAGTACTCGATGACTCTATGTCGATCCAATCCGCGCAAAGCTCACAAGCATCTCAAGCCTCCGGGCCAGTCAAGTGTCGTTTCTGCAACAAAGAGTTCAAGTACAAGAAGGCCCTCGCATCGCACGAGATGAAACACACAGAGGATAAAGTTAAGGTAAAGAATGAGCCCCCAGACAATACGGGGTCAGAGCCTGACCTGCTCACGGAGGCCAACGACCAGCTGGAACCGGAGCTCGACTCGGAGTCCAGCCACGACGAGGGAGACGAGGACAACACGTGCGATATTTGCGAGAAGCAATTCTCATACAAGCGTCTGCTGATACAGCACAAGCGGACGAAGCACACCATGGTGGCGGGGATGAAGCGCGCCAAAATCAGCCTTAAAGACTGCACCGTTAGGTGCCTCATTTGCGACGAGGAGATGAAAGTGAGCGCCATTAACGAGCACAACCAGAAACACATCTCGGTCAACATCCGACCGCGAAATATCTACACGTGCGCTCAGTGCTCGCAGAAATTCAAAAGCTGCAGTAATCTCGCCAACCACATTAAACTAGTTCACAGACTGAAGCAACAAGAAGTTCCGAAGCAGTTTGCGGGCGTGGACATGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGATGAATCCCAGACTCACAACGGCAACGGCGAGGTTCCGCGGAAAGTATCTGCGACAGTAAATTTGACAGGCTTCACGTGTCCTATCTGCGGCAAGAAGATGCCGACCCTCGTGTCGCTCAAACGTCACGTCAACTGGCACTCGTTCGTCGGCAACAACCTCGAGGCCAAGCACGAGTGCTTCGTCTGTAAAGAGACATTCAAATTCAAGGGTCACTTCAAGATGCACATGCGCTCGCACTATAAAGACACAAACCTCGACCCCGCGCTGCTGACGTGCTCCATCTGCCAGCGCCGCAGCAAGCACCTCCGCGCTGCGCAGGCGCACATGAACTGGCACAAACAGACTCGCTTCCAGGCCAAGGACTACCAGTGCAGCATCTGCAAGCGGGTGTTCCACTATCGCAAGGTGTACCTCTCGCACATGGCCATCCACTACAAGAAGGGCGAGAGCGGACAGAACACGATCATCGGCAACATGGAACCGAACAACCTCGACAAGATGACCTTCGACGGCACCTTCACCTGCCAGTTATGCGGGAAGGTCTGTGACTCGGAAAACTCGCTTAAATGTCACACTAACTGGCACAAGTCGAAGACGCTACTGTACGGCGCGCGGCACGAGTGTCAGATGTGCAGCCTCCAGTTCACCAACAAGAGGCACCTGGAGCTGCACACTCGCTCGCACTACGAGGACCCCGACGGGGAGTTCAAGTGCAACGTCTGCGGCAAGGGGTTCATCGACGAGGAGTACCACCGACGGCACGTCAAAGGGCACAACTTCGACCACCAATCGCACAAAAAAAGGATCGAGAACCTCCGAAAAGGCAAAGTCAAGTGTCCGATCTGCAACCGGTTCTATCCAGATCTCGTTAAGCTAATCCGCCATCTCAGGCGAACCCATCCGGAGAGCAAAATGATAAAGGAGGATCCGGACGCGCCTCCGCCGCGGTACTTCTCGTGCAAGCTCTGCGCCAAGTCGTTCTACGACGAGAAACGACTAAAGAGCCACGAGGAATCGCACCTTCGCAAACCCTGTTTCCTCAAGTGCAAATTCTGCGGATACAAAACCCTCTCCATGAAGGGTCACCACATCCACGTCAAACAAAAGCACATGACGAAGAAGTACGTTGACAATCCGCTGAAATGTACGCAGTGCGATGAGGTGTTCATCTGGGGATACGCACTGCACCATCACCTGCGTGACGTGCACGGGATCAACGAGGAGTGGATCGCCGAGAGTACCGAGGCCACTCTCGAGGGCCCTCTCAAAGACCTCCAATGCTCCATCTGTCTGAAGGTCCTCGCGAGCAAAGGCAACTTCGAGCGACACATCGACTATCACAACACGCTGCGCTGCAACTACTGCTCCGAGTACTTCAGCACGCTGCGCTTCCTCGAAGGACATTTGGCATTTTCCTGCGACAAGAAGAATCTCATCGGCGATGCCGACCCCTATCCGAAACGAGTCAAATGCGAGATCTGTTACAAGGCGTTCAGTTTACAGGTCAAATTGGATTGCCATCTCCGGACCCAGCACAGTATCATAGTGAACAGGGAAGCCCGCGCCGGGAAGCAGGAGCTCGTATGTGACTACTGTTTCAAAATGTTTGAGAACGAGCACGCGCTGAGTGGACATAAAGTGTACCACCGCACTGTGGGGTACTTCGGGTGCATCTATTGCTCGAGGAAGTTCAACACTCAAACCGCCTACAGGAAGCATAAGAATAACCACTTCACCACTCACAATTCCGAGGAGCCGTATAAGTGCGAGCACTGTGAGGAAACATTCGTCCAGTTTCGGGAGATGATATACCACATGCGCGACGATCACGGTGACGACAAGGAGTGGATCATCATGCCCAAAGAGTCGACGGAGGAAAAATGCCCCATTTGCAACAAGATATTCTTCAACATCCACCGGCATCTCGACTACCATGAAGAAAACAAATGCAAGAAATGCAACGAGTACTTTTACTCAACCGTCGATTGCGATAACCATCTCTGCGCTATCGATAGCGACGCGGAAGAAGCCGTGGACCTCAAACGCCCGGGGATGCCGTACGAGGAATGCACTTTTTGCTTTAAACCGATCACAAAGAAAGATTCTAAATTGAAGCATGACAAGCTGCACAGCACGTCTGGAGCGATCTCCTGCAGATTCTGCCATCTCAAGTTCAAAACGCTCGATGCGTTCAATATACACGCGTTCTCTCACCGCAGCAGGAAATACAACAAGAAGCCGATCAAATGCCGGGTATGCAGCGAGCGCTTCGTCAAATACGGGCCCTTCATCAAACATATGAGGGTGGTGCACAAGTCGGGGAGAAAGACGCACTACCGCGCGCTCGTGAAGCCGGAACGTTGCGTCATCTGCGGAGGGAAGTTCCCCAATCTGCACAACCACTACCGCGCGCATCTCACCAACCAGTGCCAGCTGTGCAACAAGTACTTCGTCTCCTCCAAACTGTTCTCTAAACACAAGTGCGAGCTCGAAGACGAGGACAGCTCCAAGGTATTCACCTCCGATGAGAACATCAGCGCGCTTATCGACTCCTACTCACCGAAAGACTTGAAGGACGACGAGAAGTTCTACGGCTACACGGATGACGATGAGGAGGTGGAGACCAATGTGCCACAAATAATGACGAAGCCTGTCGAGATGCGAGTAAAGAGGAGAACGTATGGGCCGAATAAACCTAAACCCAAACCAGTACAGAGTACTGAAGAAGCAGAAATCGAAAGGAACTTGCATTTGATGGTTCAGTCTCCCATCATATCCGATGTACTGTCACTCTATCAGACGGATGATATTGAGGTTAAGGAACAGGAGTTTGAAGatgttgtctgtttgtctgaCGATTCGATGGATATGAACAACATACCAACGCCTGTGGTTGTCATTGACGATGAGTGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTADNDMQLSEMVMDCSKIKVYDGDGLPDKICSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFSISPPPLTNRQSSDSAFSTLTDSSNLKSSFIENKVTPVSRNRKRSIESDGSRSQEYNKPSSLKRVEELRKSQKPKRPRYSADSDYEDNGASSFVNETDSDEPLFKNEHPCPHCPKTFKWGKSLKIHIAHIHTGKKGKQGQAVNIPIRSAVTPSPEQSCDDDQVNCNKCGKTFKLKIMLKRHQETCRMSPVKTPTTSPMKELVITLEPIDAVPQRAKKPTCQYCTAQFKTIDNLDKHLRVVHAAYRKKEKAETLQKGPLICIYCSKDFNDYYIYSSHFNGCPMKENLTSFQCPMCPKVVNRVNHYVNHVKNLHYYLSSGPKVEPPSPGQSAALDAMEVAGQPFECRMCSKKMTTQALLIAHLATHMSGEGDNVDAGDTDDFDSRDDTVLDDSMSIQSAQSSQASQASGPVKCRFCNKEFKYKKALASHEMKHTEDKVKVKNEPPDNTGSEPDLLTEANDQLEPELDSESSHDEGDEDNTCDICEKQFSYKRLLIQHKRTKHTMVAGMKRAKISLKDCTVRCLICDEEMKVSAINEHNQKHISVNIRPRNIYTCAQCSQKFKSCSNLANHIKLVHRLKQQEVPKQFAGVDMADFCEVVVTKAEPLDESQTHNGNGEVPRKVSATVNLTGFTCPICGKKMPTLVSLKRHVNWHSFVGNNLEAKHECFVCKETFKFKGHFKMHMRSHYKDTNLDPALLTCSICQRRSKHLRAAQAHMNWHKQTRFQAKDYQCSICKRVFHYRKVYLSHMAIHYKKGESGQNTIIGNMEPNNLDKMTFDGTFTCQLCGKVCDSENSLKCHTNWHKSKTLLYGARHECQMCSLQFTNKRHLELHTRSHYEDPDGEFKCNVCGKGFIDEEYHRRHVKGHNFDHQSHKKRIENLRKGKVKCPICNRFYPDLVKLIRHLRRTHPESKMIKEDPDAPPPRYFSCKLCAKSFYDEKRLKSHEESHLRKPCFLKCKFCGYKTLSMKGHHIHVKQKHMTKKYVDNPLKCTQCDEVFIWGYALHHHLRDVHGINEEWIAESTEATLEGPLKDLQCSICLKVLASKGNFERHIDYHNTLRCNYCSEYFSTLRFLEGHLAFSCDKKNLIGDADPYPKRVKCEICYKAFSLQVKLDCHLRTQHSIIVNREARAGKQELVCDYCFKMFENEHALSGHKVYHRTVGYFGCIYCSRKFNTQTAYRKHKNNHFTTHNSEEPYKCEHCEETFVQFREMIYHMRDDHGDDKEWIIMPKESTEEKCPICNKIFFNIHRHLDYHEENKCKKCNEYFYSTVDCDNHLCAIDSDAEEAVDLKRPGMPYEECTFCFKPITKKDSKLKHDKLHSTSGAISCRFCHLKFKTLDAFNIHAFSHRSRKYNKKPIKCRVCSERFVKYGPFIKHMRVVHKSGRKTHYRALVKPERCVICGGKFPNLHNHYRAHLTNQCQLCNKYFVSSKLFSKHKCELEDEDSSKVFTSDENISALIDSYSPKDLKDDEKFYGYTDDDEEVETNVPQIMTKPVEMRVKRRTYGPNKPKPKPVQSTEEAEIERNLHLMVQSPIISDVLSLYQTDDIEVKEQEFEDVVCLSDDSMDMNNIPTPVVVIDDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01170802;
90% Identity
-
80% Identity
-