Prec008266.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- -
- Assembly
- GCA_963082625.1
- Location
- OY720239.1:19429727-19444062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.026 2.7 9.7 3.5 1 23 196 219 196 219 0.92 2 28 0.0004 0.043 15.4 0.4 3 22 255 274 253 274 0.93 3 28 0.00029 0.031 15.8 0.4 2 23 309 331 309 331 0.97 4 28 0.00024 0.025 16.1 0.7 1 23 381 404 381 404 0.97 5 28 0.012 1.3 10.7 0.1 1 23 426 448 426 448 0.96 6 28 0.0014 0.15 13.7 2.0 2 23 499 520 498 520 0.96 7 28 0.00044 0.047 15.3 2.3 2 23 568 590 568 590 0.97 8 28 6.8e-06 0.00072 21.0 1.3 1 23 640 663 640 663 0.97 9 28 0.00032 0.034 15.7 0.1 1 23 719 741 719 741 0.97 10 28 0.0016 0.17 13.5 6.6 1 23 752 774 752 774 0.97 11 28 0.071 7.5 8.3 1.1 2 23 786 807 785 807 0.96 12 28 0.0037 0.39 12.4 1.0 1 23 817 839 817 839 0.98 13 28 0.61 64 5.4 4.2 1 23 868 890 868 890 0.92 14 28 0.0013 0.14 13.8 5.6 1 23 901 923 901 923 0.98 15 28 0.0015 0.16 13.6 0.7 1 23 931 953 931 953 0.96 16 28 0.0035 0.37 12.5 0.1 2 23 973 995 972 995 0.97 17 28 0.0049 0.52 12.0 3.1 1 23 1013 1035 1013 1035 0.98 18 28 0.27 29 6.5 0.9 2 23 1076 1098 1075 1098 0.90 19 28 0.0022 0.24 13.1 0.2 2 23 1121 1142 1120 1142 0.95 20 28 0.071 7.5 8.4 0.3 2 20 1146 1164 1145 1165 0.93 21 28 0.14 15 7.4 1.6 2 23 1185 1207 1184 1207 0.96 22 28 0.016 1.7 10.4 0.3 2 23 1223 1244 1222 1244 0.94 23 28 0.17 18 7.1 4.0 5 23 1254 1272 1252 1272 0.94 24 28 0.0012 0.13 13.9 1.4 2 23 1283 1305 1282 1305 0.95 25 28 2 2.1e+02 3.8 6.7 2 23 1322 1340 1322 1340 0.94 26 28 0.2 21 6.9 2.2 2 23 1412 1433 1411 1433 0.94 27 28 0.0068 0.72 11.6 0.5 2 23 1444 1466 1443 1466 0.96 28 28 0.0015 0.16 13.6 0.9 2 21 1504 1523 1503 1524 0.95
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGAAAATGCAGGCTCTGCCTCAAACTTGGGGACTTCTTCTCGATCTTCGCTACGGATAACGATATCCAGTTATCTGAGATGGTCATGGCATGTTCCAGGATAAAGGTGTATGATGGAGATGGACTACCAGATAAAGTATGCTCAGAATGTATACAGAAGCTCAGCAGTGCCTACATATTCAAGCAGCAATGTGAGAGGTCTGATCAGGAGCTGCGGCGGAACTATGTTCCACCACCAGGCTTTAGCGTCAGTCCTCCACCACCAACAAACCGACAAAGCAGCGACTCTGCGTTCTCCACCCACACAGACAGCTCAAACCTCAAGTCATCTTTCTCAGAAAGCAAAGTAACCCCTGTCGGTAGACCCAGAAAACGAAGTGTTGAGAGTGACAATGCTTCCGTCGGTAGCCGGTCCCAGGAAAGGCCCAGTAGCTCCAAGCGTGTGGAAGAACTCAAAAAATCACAAAGACCAAAGCGGCCACGGTATTCCGCCGACTCCGATTACGAAGATAACGGGGCTTCTAGTATTGTCAATGAAACAGACTCTGACGAACCGCTCTTAAAAAACGAACATGCATGCCCTCACTGCCCTAAAACCTTTAAATGGAAAAAGAGCATGAAGATACACATAGCTCACATACACACAGGCAAAAAAGCAAACTCAAGGGGCCCAGAAGTAAACGTCAACATACCTATAAAGAGCGCAAAAAACACAAGTCTTTCAGAACTGGAAGATGAGAAGATAGCTTGTGACAAATGTGACAAAACATTTAAACTGAAGATCATGCTGAAACGACATCAAGAAACTTGCCAGAAGTCGCCAGTGAAATCTCTTTCGAAATCACCAATGAAGGAGCTCGTGATTACGCTGCAGCCGATAGACGCCGTGCCGCAACGTTCTAAAAAGCCAACTTGTGAATATTGCACGGCGCAATTCAAAACCCTTGACAACTTAGATAAACATTTGAGAGTGGTCCATGCGGCGATACGTAGAAAGACACCTAGTGAAACAAAGGGACCCTTTATAGGACCCTTTATATGCATCTATTGCAGCAAAGATTTTGAAGAATACTACATCTACAGCTCTCATTTCAACGGCTGCCCGATGAAGGAGAACCTTTCAGTTTACAAATGTCCCATGTGTCCGAGGAGCTGCACCCGCGCCACCGCCTACGTGAGCCACGTGAGGAACGCCCACTACATGGGCGGGAACGTGAGTCCCAAAGTGGAGCCTCCGTCCGACCAGAGCCCGTCCGGTTCCTTCGAATGCCGCATGTGCAGCAAGAAGCTGGCTACACAGGCGCTGCTGATCACGCACTTGGCCGCCCACATGTCCAATGCCGACGAGGACGACAACGACAACGCGAGTGCCGACGATTTCGATTCAAGAGATGACACGGTAGCTGACGATTCGATGTCAGTGCAGTCGGCGCACAGCTCGCAAGCGTCCCGAGCCTCACACGTCCCATCGGGACCCTTGAAATGCCGCTTTTGTGATAAGGAGTTCACTTACAAGAAATCGCTTGCTTCGCACGAGCTAAAGCATACCGAAGAGAAAGTGAAAGTGAAACATGAACCGCCTGATAAGTCGCCGGACACCGATCTGCTGACGGAGACACACAACCAGTCTGTTAACAATATAGAGTTTGATTCCGAATCTAGTCAAGATGAGGGAGAGGAAGATAACACATGTGATATTTGCGAGAAGCAATTCTCCTACAAACGGCTGCTCTTACAACACAAGCGCACGAAACACACCATGGTGGCTGGCATGAAGCGAGCCAAAATAAGCCTTAAAGATTGCTCCGTAAGGTGCCTGATCTGTGAAGAGGAGATGAAAGTAAGCGCCATCAATGAGCACAATCAGAAGCACATCTCGGTGAATATACGGCCGAGGAACATTTACACATGTGCGGAGTGCGGACAGAAGTTCAAGAGCTGCAGCAATCTGGCCAATCACATCAAACTGGTTCACAGGTTGAAACAGCAAGAAGTGCCAAAGCAATTTGCCGGCGTAGATATGGCGGATTTTTGTGAGGTCGTTGTGACTAAAGCGGAACCCCTGGATGAATCCCAGAGTCACAACGGCTATGGAGACGAGGTTCCGCTGAATGCAGCGCCAACTGTGAACCTGACCGGATTCACATGTCCCATCTGCGGCAAGAAGATGCCGACCCTCGTATCCCTCAAACGACACGTCAACTGGCACTCGTTTGTCGGGAACAATCTAGAGTCTAAGCACGAGTGCTTCGTTTGTAAGGAGACATTCAAGTTCAAGGGGCACTTCAAGATCCACATGCGGCAGCACTACAAGGACACCAACCTGGACCCATCCTTCCTCACCTGCTCCATCTGCCAGCGCAAGAGCAAGCACCTGCGCGCAGCCCAGGCGCACATGAACTGGCACAAACAGACGCGGTTCCAAACCAAGGACTACCAGTGCTCCATCTGCAAGAGAGTCTTCCAGTACAGGAAGGTGTATCTGTCTCACATGGCGGTCCACTACAAGAAGGGCGAGAGCGGACAGAACACGATCGTCGGCGACATGGTGCCCAACAACCTCGACAAGGCCAAGTTCGACGGAACCTTCACCTGCCAGCTCTGCGGGAAGGTGTGCGACTCGGAGAACTCGCTGAAGTGCCACACCAGCTGGCACCGctcaaagacgctgctgtacgGCGCGCGCCACGAGTGCCAGATGTGCAACCTGCAGTTCACCAACAAGCGCCACCTCGAGCTGCACACGCGCTCGCACTACGAGGACCCCGACGGCGAGTTCAAGTGCCCCGTCTGCGGCAAGGGCTTCATCGACGAGGAGTACCACCGCCGCCACGTCAAGGGACACAACTTCGACCACCAGTCGCACAAGAAGCGCATAGAGAACCTGCGCAAGGGCAAGGTGAAGTGCCCCATCTGCGCGCGGTACTACCCGGACCTCGTGAAGCTGATCCGCCACCTGCGGCGCACGCACCCCGAGAGCAAGATGATCAAGGAGGACCCCGACGCGCCGCCGCCCAAGTACTACTCGTGCAAGCTGTGCGCCAAGACCTTCTACGACGAGAAGCGCTTCAAGCGCCACCAGGAGTCCCACCTGCGCAAGCCGTGCTTCATCAAGTGCAAGTTCTGCGGCTACAAGACCATCTCGATGAAGAGCCACCACATCCACATCAAGACGAAGCACATGACGAAGAAGTACGTGGAGAACCCCCTGAAGTGCACTCAGTGCGACGAGGTGTTCGTGTGGGGCTACGCGCTGCACCACCACCTGCGCGACGAGCACGGCATCACCGAGACGTGGATCGCGGAGCGCACCGAGGCCACGCTGGAGGGCCCGCTCAAGGACCTGCAGTGCTCCATCTGCCTCAAGGTGCTCGCCAGCAAGGGCAACTTCGAGCGGCACATCGACTACCACAACACGCTGCGCTGCAACTACTGCTCCGAGTACTTCAGCACCAACCGGTTCCTCGAGGGCCACCTCGCCTTCACCTGCGACAAGAAGAACCGCATCGGCGACACCGACCCGTACCCCAAGCGCGTCAAGTGCGAGATCTGCTACAAGGCCTTCAGCCTGCAGGTCAAGCTGGACTGCCACCTGCGCACGCAGCACGCCATCAAGGTCAACCGGGACGCCCACGCCGGCAAGCAGGAGCTCGTGTGCGACTACTGCTTCAAGGTGTTCGAGAACGAGCACGCGCTCGCGGGACACAAGATCTACCACCGCACCATCGGCTACTTCGGCTGCATCTACTGCCCGCGCAAGTTCAACACGCAGACTGCCTTCCGCAAGCACAAGAACCACCACTTCGCCATGCACAACGTCGACAACCCGACCAAGTGCGAGCACTGCGACGAGACCTTCGTCCAGTTCCGCGACATGATCTACCACATGCGCGACGACCACGGCGACGACAAGGAGTGGATCATCATGCCGAAGGAGTCCATCGAGGAGACTTGCACCATCTGCCACAAGACGTTCTTCAACCTGCATCGCCACATGGACTACCACGAGGAGAACAAATGCAAGAAATGCAACGAGTACTTCTTCTCGACGCTCGACTACGACAACCACCTGTGCGCCATCGAGAGCGACGCCGAGGAGGCGCCGGGCGTCGCCGACCCCGCCGCGCCCTACTCGGAGTGCACTTTCTGCTTCAAGCCGATCACCAAGAAGGACTCCAAGAAGAAGCACGATGGCCTCCACTTCACGTCGGGCGCGATATCTTGCAGATTCTGCCATCTGAAGTTCAAGACGCTCGACGCCTTCAACATCCACGCGTTCTCCCACCGCAGCCGGAAGTACAATAAGAAGCCGATCAAGTGCCGCATATGCAAGGAGCGCTTCATCAAGTACGGCCCGTTCATGAAACACATGAAGGTGGTTCACAAGTGCACCAAGAAGAGCCACTACCGCGCGCTCGTGAAGCCGGAGCGCTGCGTCATCTGCGGGGCGATGCTGCCCAACCTGCACAACCACTACCGCGCGCACCTCGCCAACCAGTGCCCGCTCTGCGGCAAGTACTTCGCGTCCTCGCGCCTGTTCGCGCGCCACCAGTGCGACGTCGCCGACGCGGACGCCTCGAAGGTGTTCACTTCGGACGAGAACATACAAGCGCTCGTCAACTCTTACACGCCGAAAGACTTAAAAGACGACGAAAAGTTCTACGGTTACACTGATGACGATGAAGAAGTGGAGACGGAGCTACCAGCGGCGCTGACTATGGAGCAggataataaagttaaaaaggCGATGAATGGCCCGACGAAACGGAAATCGAAGGTGCCGGTCAGCGAAGAGGCGGAATACGAGAGAGATCTACACATGATGGTGCAATCGCCGATCATATCCGACGTGCTGTCGCTATACACCAGTGACAAAACTCTAGAGCACAGCGGCGAGGACCAGAAGTTGCTGGAAGAGGTTGTTACCCTGACTGACGATGAAGACGATTTCATGGACATGAATGATGTAGCGGCGCCAGTTGTGATTATTGACGATGACGATTag
- Protein Sequence
- MALKLGKCRLCLKLGDFFSIFATDNDIQLSEMVMACSRIKVYDGDGLPDKVCSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFSVSPPPPTNRQSSDSAFSTHTDSSNLKSSFSESKVTPVGRPRKRSVESDNASVGSRSQERPSSSKRVEELKKSQRPKRPRYSADSDYEDNGASSIVNETDSDEPLLKNEHACPHCPKTFKWKKSMKIHIAHIHTGKKANSRGPEVNVNIPIKSAKNTSLSELEDEKIACDKCDKTFKLKIMLKRHQETCQKSPVKSLSKSPMKELVITLQPIDAVPQRSKKPTCEYCTAQFKTLDNLDKHLRVVHAAIRRKTPSETKGPFIGPFICIYCSKDFEEYYIYSSHFNGCPMKENLSVYKCPMCPRSCTRATAYVSHVRNAHYMGGNVSPKVEPPSDQSPSGSFECRMCSKKLATQALLITHLAAHMSNADEDDNDNASADDFDSRDDTVADDSMSVQSAHSSQASRASHVPSGPLKCRFCDKEFTYKKSLASHELKHTEEKVKVKHEPPDKSPDTDLLTETHNQSVNNIEFDSESSQDEGEEDNTCDICEKQFSYKRLLLQHKRTKHTMVAGMKRAKISLKDCSVRCLICEEEMKVSAINEHNQKHISVNIRPRNIYTCAECGQKFKSCSNLANHIKLVHRLKQQEVPKQFAGVDMADFCEVVVTKAEPLDESQSHNGYGDEVPLNAAPTVNLTGFTCPICGKKMPTLVSLKRHVNWHSFVGNNLESKHECFVCKETFKFKGHFKIHMRQHYKDTNLDPSFLTCSICQRKSKHLRAAQAHMNWHKQTRFQTKDYQCSICKRVFQYRKVYLSHMAVHYKKGESGQNTIVGDMVPNNLDKAKFDGTFTCQLCGKVCDSENSLKCHTSWHRSKTLLYGARHECQMCNLQFTNKRHLELHTRSHYEDPDGEFKCPVCGKGFIDEEYHRRHVKGHNFDHQSHKKRIENLRKGKVKCPICARYYPDLVKLIRHLRRTHPESKMIKEDPDAPPPKYYSCKLCAKTFYDEKRFKRHQESHLRKPCFIKCKFCGYKTISMKSHHIHIKTKHMTKKYVENPLKCTQCDEVFVWGYALHHHLRDEHGITETWIAERTEATLEGPLKDLQCSICLKVLASKGNFERHIDYHNTLRCNYCSEYFSTNRFLEGHLAFTCDKKNRIGDTDPYPKRVKCEICYKAFSLQVKLDCHLRTQHAIKVNRDAHAGKQELVCDYCFKVFENEHALAGHKIYHRTIGYFGCIYCPRKFNTQTAFRKHKNHHFAMHNVDNPTKCEHCDETFVQFRDMIYHMRDDHGDDKEWIIMPKESIEETCTICHKTFFNLHRHMDYHEENKCKKCNEYFFSTLDYDNHLCAIESDAEEAPGVADPAAPYSECTFCFKPITKKDSKKKHDGLHFTSGAISCRFCHLKFKTLDAFNIHAFSHRSRKYNKKPIKCRICKERFIKYGPFMKHMKVVHKCTKKSHYRALVKPERCVICGAMLPNLHNHYRAHLANQCPLCGKYFASSRLFARHQCDVADADASKVFTSDENIQALVNSYTPKDLKDDEKFYGYTDDDEEVETELPAALTMEQDNKVKKAMNGPTKRKSKVPVSEEAEYERDLHMMVQSPIISDVLSLYTSDKTLEHSGEDQKLLEEVVTLTDDEDDFMDMNDVAAPVVIIDDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170802;
- 90% Identity
- -
- 80% Identity
- -