Basic Information

Insect: Anticlea derivata
Gene Symbol: -
Assembly: GCA_947579855.1
Location: OX388261.1:2372039-2379866[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 30 0.023 1.1 10.0 4.5 1 23 198 221 198 221 0.93

2 30 0.00046 0.023 15.3 0.5 3 22 253 272 251 272 0.93

3 30 0.00022 0.011 16.3 0.3 2 23 307 329 307 329 0.97

4 30 0.00077 0.039 14.6 1.3 1 23 377 400 377 400 0.97

5 30 0.013 0.63 10.7 0.1 1 23 422 444 422 444 0.96

6 30 0.0024 0.12 13.0 1.3 2 23 489 510 488 510 0.96

7 30 0.00023 0.012 16.2 2.0 2 23 556 578 556 578 0.97

8 30 0.00024 0.012 16.2 1.3 1 23 628 651 628 651 0.97

9 30 0.00058 0.029 15.0 0.1 1 23 706 728 706 728 0.97

10 30 0.0011 0.057 14.0 5.6 1 23 739 761 739 761 0.97

11 30 0.072 3.6 8.4 1.1 2 23 773 794 772 794 0.96

12 30 0.0049 0.24 12.0 0.9 1 23 804 826 804 826 0.98

13 30 0.9 45 4.9 4.1 1 23 855 877 855 877 0.92

14 30 0.0061 0.3 11.7 7.8 1 23 888 910 888 910 0.98

15 30 0.002 0.1 13.2 1.2 1 23 918 940 918 940 0.96

16 30 0.0011 0.055 14.1 0.2 2 23 960 982 959 982 0.97

17 30 0.049 2.5 8.9 2.1 1 23 1000 1022 1000 1022 0.97

18 30 0.26 13 6.6 0.8 2 23 1063 1085 1062 1085 0.90

19 30 0.0041 0.2 12.3 0.2 2 23 1108 1129 1107 1129 0.95

20 30 0.4 20 6.0 0.3 2 20 1133 1151 1132 1152 0.92

21 30 0.13 6.6 7.5 1.7 2 23 1172 1194 1171 1194 0.96

22 30 0.044 2.2 9.0 0.6 2 23 1210 1231 1209 1231 0.91

23 30 0.042 2.1 9.1 1.8 5 23 1241 1259 1239 1259 0.94

24 30 0.001 0.051 14.2 1.3 2 23 1270 1292 1269 1292 0.95

25 30 9.5 4.8e+02 1.7 5.0 2 22 1309 1326 1309 1327 0.74

26 30 0.62 31 5.4 1.7 2 21 1331 1350 1330 1351 0.93

27 30 0.52 26 5.7 2.9 2 23 1399 1420 1398 1420 0.93

28 30 0.0043 0.22 12.2 0.3 2 23 1431 1453 1430 1453 0.97

29 30 2.4 1.2e+02 3.5 0.8 2 23 1469 1487 1469 1487 0.78

30 30 0.81 41 5.1 4.1 2 21 1491 1510 1490 1511 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	30	0.023	1.1	10.0	4.5	1	23	198	221	198	221	0.93
2	30	0.00046	0.023	15.3	0.5	3	22	253	272	251	272	0.93
3	30	0.00022	0.011	16.3	0.3	2	23	307	329	307	329	0.97
4	30	0.00077	0.039	14.6	1.3	1	23	377	400	377	400	0.97
5	30	0.013	0.63	10.7	0.1	1	23	422	444	422	444	0.96
6	30	0.0024	0.12	13.0	1.3	2	23	489	510	488	510	0.96
7	30	0.00023	0.012	16.2	2.0	2	23	556	578	556	578	0.97
8	30	0.00024	0.012	16.2	1.3	1	23	628	651	628	651	0.97
9	30	0.00058	0.029	15.0	0.1	1	23	706	728	706	728	0.97
10	30	0.0011	0.057	14.0	5.6	1	23	739	761	739	761	0.97
11	30	0.072	3.6	8.4	1.1	2	23	773	794	772	794	0.96
12	30	0.0049	0.24	12.0	0.9	1	23	804	826	804	826	0.98
13	30	0.9	45	4.9	4.1	1	23	855	877	855	877	0.92
14	30	0.0061	0.3	11.7	7.8	1	23	888	910	888	910	0.98
15	30	0.002	0.1	13.2	1.2	1	23	918	940	918	940	0.96
16	30	0.0011	0.055	14.1	0.2	2	23	960	982	959	982	0.97
17	30	0.049	2.5	8.9	2.1	1	23	1000	1022	1000	1022	0.97
18	30	0.26	13	6.6	0.8	2	23	1063	1085	1062	1085	0.90
19	30	0.0041	0.2	12.3	0.2	2	23	1108	1129	1107	1129	0.95
20	30	0.4	20	6.0	0.3	2	20	1133	1151	1132	1152	0.92
21	30	0.13	6.6	7.5	1.7	2	23	1172	1194	1171	1194	0.96
22	30	0.044	2.2	9.0	0.6	2	23	1210	1231	1209	1231	0.91
23	30	0.042	2.1	9.1	1.8	5	23	1241	1259	1239	1259	0.94
24	30	0.001	0.051	14.2	1.3	2	23	1270	1292	1269	1292	0.95
25	30	9.5	4.8e+02	1.7	5.0	2	22	1309	1326	1309	1327	0.74
26	30	0.62	31	5.4	1.7	2	21	1331	1350	1330	1351	0.93
27	30	0.52	26	5.7	2.9	2	23	1399	1420	1398	1420	0.93
28	30	0.0043	0.22	12.2	0.3	2	23	1431	1453	1430	1453	0.97
29	30	2.4	1.2e+02	3.5	0.8	2	23	1469	1487	1469	1487	0.78
30	30	0.81	41	5.1	4.1	2	21	1491	1510	1490	1511	0.95

Sequence Information

Coding Sequence: ATGGCCCTCAAACTTGGAAAATGCAGGCTCTGCCTCAAGCTCGGAGACTTCTACTCCATCTTCACGGCTGATAACGATGTTCAACTGTCCGAGATGGTCATGGAATGTTCCAGGATAAAGGTCTATGATGGAGATGGACTTCCTGATAAAGTGTGCTCGGAATGCATACAGAAGCTAAGCAGTGCCTACATATTCAAGCAGCAATGCGAGAGATCCGATCAGGAGCTGCGGAGGAACTATGTTCCACCACCAGGGTTCAGTATCAGTCCACCACCACCGATTACGCGGCAAAGCAGTGATTCAGCCTTCTCAACTCAAACAGACAGTTCAAACCTTAAGACATCTTTTACTGAAAACAAAGTAACACCTGTCAGCCGCGGTAGAAAGAGAAGCGTGGAGAGTGACAATGCTTCTGTTGGCAGTCAATCTCAAGACTACTGCAAACCAAGCAGCTCTAAGCGCGTAGAAGAACTCAAGAAATCGAGGCTAAAGCGTCCGCGCTATTCCGCCGATTCCGATTACGAGGACAACGGTGCTTCAGCCAGTTTTGTAAACGAAACCGATTCAGACGAGCCGTTATTAAAAAACGAACACAACTGCCCACACTGCCCAAAGTCGTTCAAATGGATGAAGAGTCTGAAGATACACATGGCGCACATGCACACGGGGAAGAAGGCTAACTCGCGACCAGAGACGCTCGTCAACATTCCTATAAAAAGCATGGACCCGCCCAAAAGCGACGACGATCAGATCGACTGCGACAAGTGTGGGAAAAAGTTCAAGCTAAAGATCATGCTAAAGCGTCACCAGGAAACGTGCCAAAAGTCACCAATGAAGGCCATAGAAAAATCACCAATGAAGGAGCTGGTGATAACTCTAGAGCCGATTGACGCCATACAGCAACGCCCCAAGAAACCAACATGCGAATATTGTACGGCGCAATTCAAAAGCATTGATAACCTGGAGAAACATCTGAGAGTTGTCCACGCGGCGACACGGAAGAAAGAGAAAGCGGAGAATGAGCCAAAAGGACCCCTGATATGTATTTATTGCAGCAAAGACTTTGGAGATTACTACCTGTACAGCTCACATTTCAACGGTTGCCCGATGAAGGAGAACATGACTTCGTACCAATGTCCCATGTGTCCCAAGATCTGTTCTCGAGTGAACAATTACGTGAACCATGTGAAGAGTACTCACTATTTTGGGTCTGGTACTAAGGTGGAGTTGCCATTGCAGAGTGAAAGCCAGGCCGGCCAGGCATTTGAGTGCCGCATGTGCAGTAAGAAGCTGGCCACGCAAGCGCTGCTGATCACGCACTTGGCCGCGCACATGTCCATTGACGATGATGACAATGTCACTGTTGATGATGATGATTTTGATTCAAGAGATGACACAGTAGCCGATGACTCCTTTTCAGTCCAATCCGCACACAGCTCGCAAGCCTCGCAGTCGGGACCCGTCAAGTGTCGCTTCTGTGATAAAGAGTTCAAGTACAAAAAAGCCCTCGTCTCTCATGAACTGAGGCACACCGAAGAGAAAGTATCCGTGAAAACCGAGCCCCCGGACAAACTGCCCGAGGCGGATCTCCTCAAAGAGACTGACGCACAGTTCGCTAAAGAATTCGACTCGGAATCTAGTCAAGACGAGGGAGAGGAAGACAATACGTGCGATATTTGCGAGAAGCAATTCTCCTACAAACGCCTGCTAATCCAACACAAGCGCACGAAACATACCATGGTGGCTGGTATGAAGCGAGCCAAAATAAGCCTTAAAGACTGCACGGTGAGGTGCCTGATTTGCGATGAAGAGATGAAAGTTAGTGCTATTAATGAGCACAATCAGAAGCACATCTCGGTGAATATTCGGCCGAGGAATATTTACACTTGTGCAGAGTGCGCGCAGAAGTTTAAGAGCTGCAGCAACCTGGCCAATCACATCAAACTAGTGCACAGGTTGAAGCAGTCAGAGGTGCCGAAGCAGTTCGCAGGTGTGGACATGGCGGATTTTTGTGAGGTCGTTGTGACGAAGACGGAACCGCTGGAAGTATCCCAGAGTCACAACGGCTATGGCGAGGTTCCGCTGAACGCAGCTCCCACGGTCAACCTTACCGGGTTCACCTGCCCCATCTGTGGGAAGAAGATGCCCACGCTCATATCCCTCAAGCGGCACGTGAATTGGCACTCGTTTGTGGGCAACAATTTGGAGTCGAAGCACGAGTGTTTCGTATGTAAAGAGACCTTCAAATTCAAAGGCCACTTCAAGATCCACATGCGCGGGCACTATAACGACACCAACTTGGACCCGGCGCTGTTGACCTGCTCCATCTGCCAACGCAAGAGCAAGCATCTGCGCGCTGCGCAGGCGCACATGAACTGGCACAAGCAAACCCGCTTCCAGACAAAAGACTACCAGTGCTCGATTTGCAAACGAGTCTTCCAGTACCGACGCGTCTACCTCTCGCATATGGCGATCCATTACAAAAAGGGGGAGAGCGGGCAGAACACCATAGTTGGAGTCATGGACCCGAACAACCTAGACCGGGTCACCTTCGATGGTACCTTCAGCTGTCAGCTCTGCGGAAAAGTCTGCGACTCTGAGAACTCCCTGAAATGCCACACCAGCTGGCACAAGTCCAAGACGCTGCTGTACGGGGCGCGGCACGAATGCCAGATGTGTCACCTCCAGTTCACGAACAAACGACATCTGGAGCTCCACACGCGCTCGCATTACGAAGACCCGAACGGTGAATTCAAGTGTAATATATGCGGGAAGGGATTCATCGACGAGGAGTACCATCGCCGTCACGTCAAGGGTCACAACTTCGATCATCAGTCCCACAAGAAGAGAATAGAGAACCTGAGGAAGGGGAAGGTGAAATGTCCCATCTGTAACCGGTACTATCCGGAACTGGCGAAGTTGATCCGGCACCTCCGCCGCACGCATCCAGAGAGTAAAATGATAAAAGAGGACCCTGACGCGCCGCCGCAGAAGTATTACTCCTGCAAGCTGTGCGCCAAGTCCTTCTATGACGAGAAGCGGTTCAAGAGCCACGAGGAGTCGCATCTGCGCAAGCCCAGCTTCCTCAAATGCAAGTTCTGCGGCCACAAGACCATCTCCATGAAGGGCCATCACATCCACATCAAGACGAAGCATATGACGAAGAAGTATGTGGATAATCCTTTGAAGTGTACGCAGTGCGACGAAGTTTTCGTGTGGGGGTACGCGTTGCACCATCACTTGCGCGATGTGCACGGGATCAATGAGGACTGGATCGCCGAGAGGACCGAAGCGACGCTCGAAGGCCCACTCAAAGACCTACAATGCTCCGTGTGTTTGAAAGTACTCGCCAGCAAGGGCAACTTTGAACGGCACATTGACTATCACAACACGTTGCGCTGCAACTACTGCTTCGAGTACTTCAGCACGCTTCGCTTCCTCGAAGGGCACCTCGCCTTCAGCTGCGACAAGAAGAAACTCATCGGAGACGCGGACCCCTATACGAAGCGCATCAAGTGTGAAATATGCTACAAGGCATTCAGCTTGCAAGTCAAGTTAGACTGCCATCTGAGAACTCAGCACGATATAAAAGTGAACAGGGAACAATCAGCGGGGAAGCTAGAGCTGGTTTGTGACTATTGTTTCAAAGTGTTTGAGAATGAACACGCCCTCAGCGGACATAAGGTCTACCACCGGACTATCGGCTACTTCGGCTGCATATACTGCCCGAGGAAATTCAACACCCAAACAGCGTACAGGAAGCACAAGAACAATCACTTGAACGTACATAACGTAGATAACCCGACGAAGTGCGAGCACTGCGACGAAACGTTCGTGCAGTTCAAGGAGATGATCTACCACATGAGGGATGTACACGGGGACGATAAGGAATGGATCGTCATGCCGAAAGATTCCATCGAAGAGACTTGCACGATCTGTCACAAGACATTCTTCAATATACACAAGCACATGGATTACCACGAGGAGAACAAGTGCAAGAAATGTAACGAGTACTTTTTTTCGTCAGCGGATTATGATAACCATCTTTGTGCTATCGAAAGCGATGCTGAAGAAGTGGCCGGGGTGGTCACCCATGGGATGCCGTACGAGGAATGCAAATTCTGCTTCAAGCCGATCACCAAGAAGGATTCCAAGAAGAAGCATGATATTCTACATGGCACTTCGGGCGCTATTTCGTGTCGGTTCTGCCATCTGAAGTTCAAGACGCTGGACGCGTTCAATATACACTCGTTCTCCCACCGCAGCAGGAAGTACAACAAGAAGCCGATCAAATGCCGCGTGTGCAAGGAGCGTTTCGTGAAGTACGGTCCGTTCATTAAACACATGAGAGTAGTGCACAAATCCACGAAGAAAACCCACTACCGCGCGCTCGTGAAGCCGGAACGCTGCGTGATCTGCGGCGAGCAATTCCCCAATTTGCACAACCATTACCGCGCGCATCTGGCCAATCAGTGCCAGTTCTGCCTAAAGTACTTCACCTCCTCGAAACTCTTCTCGAAACACCAGTGCGATATAATCGACGAGGACCACACCAAAGTCTTCACATCCGACGAAAACTTGAGTGCGCTCATCAACACGTACACGCCTCGAGACTTGAAAGACGATGAGAAATTCTACGGATACACCGATGACGATGAAGAGGTTGAGACCGAATTGCCGGCGATTATGACACAGGCTCAGGATAAGAAGGTTATGAATGGTCGGCCTAAGTCTCGGAAACCAGTGCAAGACAGCCAAGAGGCGGAAATCGAGAGGAACCTGCATTTGATGGTACAATCACCGATAATATCCGATGTGCTGTCGTTGTACCAGACTGAGGAGGGGACCCAAGATAAGAATGAGGTACTGGAAGACATCGTCAGTTTGACTGACGATGATTCTATGGATATGAACGATATTGCGGCGCCTATCGTTGTAATTGATGATTAA
Protein Sequence: MALKLGKCRLCLKLGDFYSIFTADNDVQLSEMVMECSRIKVYDGDGLPDKVCSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFSISPPPPITRQSSDSAFSTQTDSSNLKTSFTENKVTPVSRGRKRSVESDNASVGSQSQDYCKPSSSKRVEELKKSRLKRPRYSADSDYEDNGASASFVNETDSDEPLLKNEHNCPHCPKSFKWMKSLKIHMAHMHTGKKANSRPETLVNIPIKSMDPPKSDDDQIDCDKCGKKFKLKIMLKRHQETCQKSPMKAIEKSPMKELVITLEPIDAIQQRPKKPTCEYCTAQFKSIDNLEKHLRVVHAATRKKEKAENEPKGPLICIYCSKDFGDYYLYSSHFNGCPMKENMTSYQCPMCPKICSRVNNYVNHVKSTHYFGSGTKVELPLQSESQAGQAFECRMCSKKLATQALLITHLAAHMSIDDDDNVTVDDDDFDSRDDTVADDSFSVQSAHSSQASQSGPVKCRFCDKEFKYKKALVSHELRHTEEKVSVKTEPPDKLPEADLLKETDAQFAKEFDSESSQDEGEEDNTCDICEKQFSYKRLLIQHKRTKHTMVAGMKRAKISLKDCTVRCLICDEEMKVSAINEHNQKHISVNIRPRNIYTCAECAQKFKSCSNLANHIKLVHRLKQSEVPKQFAGVDMADFCEVVVTKTEPLEVSQSHNGYGEVPLNAAPTVNLTGFTCPICGKKMPTLISLKRHVNWHSFVGNNLESKHECFVCKETFKFKGHFKIHMRGHYNDTNLDPALLTCSICQRKSKHLRAAQAHMNWHKQTRFQTKDYQCSICKRVFQYRRVYLSHMAIHYKKGESGQNTIVGVMDPNNLDRVTFDGTFSCQLCGKVCDSENSLKCHTSWHKSKTLLYGARHECQMCHLQFTNKRHLELHTRSHYEDPNGEFKCNICGKGFIDEEYHRRHVKGHNFDHQSHKKRIENLRKGKVKCPICNRYYPELAKLIRHLRRTHPESKMIKEDPDAPPQKYYSCKLCAKSFYDEKRFKSHEESHLRKPSFLKCKFCGHKTISMKGHHIHIKTKHMTKKYVDNPLKCTQCDEVFVWGYALHHHLRDVHGINEDWIAERTEATLEGPLKDLQCSVCLKVLASKGNFERHIDYHNTLRCNYCFEYFSTLRFLEGHLAFSCDKKKLIGDADPYTKRIKCEICYKAFSLQVKLDCHLRTQHDIKVNREQSAGKLELVCDYCFKVFENEHALSGHKVYHRTIGYFGCIYCPRKFNTQTAYRKHKNNHLNVHNVDNPTKCEHCDETFVQFKEMIYHMRDVHGDDKEWIVMPKDSIEETCTICHKTFFNIHKHMDYHEENKCKKCNEYFFSSADYDNHLCAIESDAEEVAGVVTHGMPYEECKFCFKPITKKDSKKKHDILHGTSGAISCRFCHLKFKTLDAFNIHSFSHRSRKYNKKPIKCRVCKERFVKYGPFIKHMRVVHKSTKKTHYRALVKPERCVICGEQFPNLHNHYRAHLANQCQFCLKYFTSSKLFSKHQCDIIDEDHTKVFTSDENLSALINTYTPRDLKDDEKFYGYTDDDEEVETELPAIMTQAQDKKVMNGRPKSRKPVQDSQEAEIERNLHLMVQSPIISDVLSLYQTEEGTQDKNEVLEDIVSLTDDDSMDMNDIAAPIVVIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01170802;
90% Identity: -
80% Identity: -