Lhal018219.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000051.1:1432595-1438718[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.00028 0.017 15.7 2.4 1 23 196 219 196 219 0.95 2 31 0.00048 0.028 15.0 0.4 3 21 254 272 252 273 0.93 3 31 0.00026 0.015 15.9 0.4 2 23 308 330 308 330 0.97 4 31 3.3 1.9e+02 2.9 0.5 1 21 347 367 347 368 0.88 5 31 0.00014 0.0079 16.7 1.0 1 23 378 401 378 401 0.98 6 31 0.0085 0.5 11.1 0.0 1 23 418 440 418 440 0.96 7 31 0.00031 0.018 15.6 0.9 2 23 481 502 480 502 0.96 8 31 0.0002 0.012 16.2 2.0 2 23 546 568 546 568 0.97 9 31 5.9e-06 0.00035 21.0 1.3 1 23 618 641 618 641 0.97 10 31 0.00028 0.016 15.8 0.1 1 23 696 718 696 718 0.97 11 31 0.00016 0.0094 16.5 4.1 1 23 729 751 729 751 0.98 12 31 0.041 2.4 8.9 1.7 2 23 763 784 762 784 0.96 13 31 0.0034 0.2 12.3 1.0 1 23 794 816 794 816 0.98 14 31 0.53 31 5.4 4.2 1 23 845 867 845 867 0.92 15 31 0.003 0.17 12.5 5.5 1 23 878 900 878 900 0.98 16 31 0.0023 0.13 12.9 0.6 1 23 908 930 908 930 0.96 17 31 0.00068 0.04 14.5 0.2 2 23 950 972 949 972 0.97 18 31 0.0035 0.21 12.3 1.5 1 23 990 1012 990 1012 0.97 19 31 9.7 5.7e+02 1.5 5.4 2 23 1020 1042 1019 1042 0.94 20 31 0.21 12 6.7 0.8 2 23 1053 1075 1052 1075 0.90 21 31 0.01 0.6 10.8 0.1 2 23 1098 1119 1097 1119 0.95 22 31 0.12 7.3 7.4 1.6 2 23 1162 1184 1161 1184 0.96 23 31 0.005 0.29 11.8 0.3 2 23 1200 1221 1199 1221 0.92 24 31 0.17 9.8 7.0 3.6 5 23 1231 1249 1229 1249 0.94 25 31 0.01 0.61 10.8 1.3 2 23 1260 1282 1259 1282 0.95 26 31 0.59 35 5.3 3.3 2 23 1299 1317 1299 1317 0.93 27 31 1.6 96 3.9 3.4 2 21 1321 1340 1320 1341 0.93 28 31 0.44 26 5.7 2.9 2 23 1389 1410 1388 1410 0.93 29 31 0.0086 0.51 11.1 0.3 2 23 1421 1443 1420 1443 0.96 30 31 5.3 3.1e+02 2.3 0.7 2 23 1459 1477 1459 1477 0.77 31 31 0.48 28 5.6 3.5 2 20 1481 1499 1480 1501 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGAAAATGTAGGCTTTGCCTCAAGCTCGGGGATTTCTATTCAATCTTTACGGCGGATAATGACGTGCAGCTTTCAGAAATGGTCATGGAATGTTCCAGGATAAAAGTGTATGATGGAGACGGACTGCCAGATAAAGTGTGTGCAGAATGCATACAAAAGCTCAGCAGTGCCTACATATTCAAGCAGCAGTGTGAGAGGTCCGACCAAGAGCTACGACGGAACTATGTGCCACCTCCAGGGTTCAGTATCAGTCCTCCACCGCCAACACGACAAAGCAGTGACTCTGCCTTCTCGACACACACAGACAGTTCCAACCTCAAGTCCTCACTCAATGACAGTAAAGTAACTCCAGTAAAGAGAAACAGAAAGAGAAGCGTCGAAAGTGACATAGCCTCCATCGGCAGCCGATCCCAAGACTACAGCAGACCCAGCAGTTCCAAGAGAGTAGAAGAACTTAAAAAGTCACATAAAAGACCTCGCTACTCACAGGATTCTGACTGGGATGACAATGGAGCATCAAGCTACATCGGGGAAACAGATTCAGATGAACCACTCCTTAAAAAGGATGAATTCAGTTGCCCACATTGTCCAAAGAGTTTCAAATGGAAGAAGAGTCTCAAAAGCCACATCACCAACATACATGGACAAATAGTCAACTCCAACTTAGGAGTTGACGCCGTCGTCAACATTCCTAAGAAAAGTATCGACCCACGCGCATCGGACGTCGATAGCGATCAGCTGGATTGTGGAAAATGTGGGAAGACGTTCAAACTAAAAATCATGCTAAAGCGGCACCAGGAGTCCTGTCAAAATTCACCCGTCAAGTCGCCCGTGAAGTCTCCCATGAAGGAGTTGCTCATAACCCTGGAGCCGATTGACGGCGCCCAGCATCGCCCACGCAAGCCCACCTGCGAATACTGTACGGCGCAGTTCAAGACGCTCGACAATCTCGACAAACATCTCCGCGTCGTCCACGCGGCCTCGCGCAAAAAAGACAAATCAGAAAACGAAACCAAGGGCCCCTTCATTTGCATCTATTGCAGTAAAGATTTCGCCGACTATTACCTCTACAGTTCGCACTTCAACACGTGTCCGATGAAGGACAGTCGGAGTACGTACCAATGCCCCATGTGCCCCAAAGTGTGCACACGCGCTACGGGCTACGTGAGCCACGTGAGGAAGACTCACTACGAAGGTTCCGGCTACAAACAGGAGCCGGCGGCGAGCCCGGCCGGCTTCGAGTGTCGCATGTGTAGCAAGAAGCTCGCCACGCAGGCGCTGCTCATCGCGCACCTCGCCGCGCACATGTCCGCCGACGACGACGACGCCACCGTAGACGATTTCGACTCCAGGGCGGACACGGTCGACGATTCGATGTCGGTGCAATCCGCGCACAGCTCGCAGGCCTCACAGGAGGGCCCTCTCAAATGCCGCATCTGTGATAAAGAGTTCAAATACAAGAAAGCCCTCGCCTCTCACGAGTTGAAGCATGCTGAGGAAAAAGTGGCCGTGAAGCACGAACCGCCCGACAAGCCGACCGAATTGCTCACGGAGACCAATCAGGAGTTTGCTCGCGAGTTCGATTCTGAATCTAGTCAAGAGGAAGGAGAGGAGGACAACACGTGTGATATCTGCGAGAAACAGTTTTCGTACAAACGGCTGCTCATACAACACAAGCGCACCAAACATACGATGGTAGCCGGGATGAAACGCGCCAAAATAAGCCTCAAAGACTGCTCCGTGAGGTGTCTCATTTGCGACGAGGAGATGAAAGTGAGCGCGATAAACGAACACAATCAGAAACATATTTCGGTGAACATTCGGCCGAGGAATATTTACACGTGCGCAGAGTGCGGGCAGAAGTTTAAGAGTTGCAGCAACTTGGCCAATCACATCAAACTGGTTCACAGGTTGAAGCAGGCGGAAGTGCCAAAGCAGTTCGCGGGCGTAGACATGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGACGAATCCCAGACTCACAACGGCCATAACGAGGTTCCGCTGAATGCAGCGCCCACGGTCAACCTGACCGGCTTCACCTGTCCCATCTGTGGGAAAAAGATGCCCACACTCGTCTCGCTCAAACGACACGTCAACTGGCACTCGTTTGTGGGCAACAATCTCGAGAAGAAGTACGAGTGCTTCGTGTGCAAAGAGAGCTTCAAGTTCAAAGGGCATTTCAAGATCCACATGCGCGATCACTACCGCGACACAAACCTGGATCCCGCGCTTTTGACCTGCTCCATCTGCAATAGGAAGAGCAAGCATTTACGAGCTGCGCAGGCTCACATGAACTACCACAAACAGACCCGCTTCCAGAACAAAGACTACCAGTGCTCCATCTGCAAACGCGTATTCCAGTACCGCAAGGTGTACCTCTCCCACATGGCCATCCACTACAAGAAGGGCGAGAGCGGACAGAACACGATAGTCGGAGACATGGTCCCCAATAACCTCGATAAAGCCATGTTCGACGGCACCTTCACTTGCCAACTGTGCGGCAAAGTTTGCGATTCCGAAAATTCCCTTAAGTGCCACACGAGCTGGCACAAATCTAAAACGCTACTATACGGAGCGCGCCACGAGTGCCAGATGTGCAGCCTCCAGTTCACCAACAAGCGGCACCTGGAACTGCACACTCGCTCGCACTACGAGGACCCCAACGGACCCTACAAGTGCCCCATCTGCGGGAAGGGCTACATCGACGAGGAATACCACAGGAGGCACGTCAAGGGACACAACTTCGACCACCAGTCGCACAAGAAGCGAATAGAGAAACTGCGCAAGGACAAGGTGAAATGCCCGATCTGCAGCCGCTACTACCCGGACCTGGTGAAACTGATTCGCCATCTGCGGCGCACGCACCCCGAGAGCAAGATGATCAAGGAGGATCCCGACGCGCCGCCGCAGCGCTACCACTCGTGCCAGCTCTGCGCCAAGTCCTTCGTCGACGAGCGCCGGCTCAAGATGCACATGGAGATGCACCAGCGGAAGCCGAGCTTCATCAAGTGCAAGTTTTGCGGAAAGAAAACTAACTCTATGAAAGCCCATCACGTTCACATAAAGACGCGTCATATGACGAAGAAGTACACGGAGAACCCTCTAAAATGCACGCAATGCGACGAAGTGTTCGTGTGGGGCTACGCTCTGCACCACCACCTGCGCGACGCGCACGGCATCACCGAGACGTGGGTCGCCGAGCGCACCGACGCCACGCTCGAGGGGCCGCTCAAGGACCTGCAGTGCGCCGTCTGCCTCAAGGTGCTCGCCAGCAAGGGCAACTTCGAGCGGCACATAGACTACCACAACTCGCTGCGCTGCAACTATTGCTTCGACTACTTCAGCGCGCTGCGCTTCCTCGAGGGGCATCTCGCGTTCGCTTGCGACAAGAAGAAGCTCGTCGGCGATAACGATCCCCACCCGAAGAGGGTGAAATGCGAGATCTGCTACAAGGCCTTCAGCCTGCAAGTGAAGCTGGACTGCCACCTCCGCACGCAGCACAACATCACCGTCAACAAGGAGCAGCGTGCCGGCCGGCAGGAGCTCGTGTGCGACTACTGCTTCAAAGTGTTCGAGAACGAGTACGCGCTCAGCACGCACAAGGTGTACCACCGCACCATCGGCTACTTCGGCTGCATCTACTGCCCGCGCAAGTTCAACACGCAGACCGCCTACCGGAAGCACAAAAACCACCACTTCGCGCAGCTGCTGGTCGACGAGCCCAAGAAGTGCGAGCACTGCGATGAGACCTTCGTCGCCTTCCGCGAGTTCATCTACCACATGCGCGACGAGCACGGCGACGAGAAGGAGTGGATCATCCTGCCCAAGGACTCCATCGAGGAGACTTGCGCCATCTGCAACAAGACGTTCTTCAACTTGCACCGCCACATGGACTACCACGAGGAGAACAAGTGCAAGAAGTGCCACGAGTACTTCTTCTCCTCCGTGGACTTCGACAACCACCTGTGCGCCATCGAGAGTGACGAGGAGCGCGCGCCCGGCGCCGCGCTGCCCGCCCTACCCTACTCCGAGTGCCGCTTCTGCTTCAAACCCATCACCAAGAAGGATTCCAAGAAGAAACACGACCAGCTTCACGGGACCTCCGGAGCTATCTCGTGCAGATTCTGCCACTTGAAGTTCAAGACCCTCGACGCCTTCAACATCCACTCCTTCTCGCATCGCAGCCGGAAATATAACAAGAAGCCGATCAAGTGTCGCGTTTGCAAGGAGCGCTTCGTGAAATACGGCCCGTTCATTAAGCACATGAAGATAGCGCACAAAATCATCAAGAAGCTTCACTACCGCGCCCTTGTGAAGCCGGAGCGCTGCGTCATCTGTGGCGGCTCTTTTCCCAATCTGCACAACCACTACCGCGCGCATCTGCTCAACCAGTGCCAGTTCTGCTTCAAGTATTTCACCTCCTCGCGCCTCTTCGCCAGGCACGAGTGCAGCAAGATCGACGAAGACTCCACCAAGGTCTTCACCTCCGACGAGAACTTGAGCGCGCTCATCGACTCGTACGTTCCGAAAGATTTGAAAGACGATGAGAAATACTACGGCTTCACCGACGATGACGAAGAGGTGGAGACTAACCTGCCGCCGGCGATGACACGAGAGCAGGACCGGAAGGCTGCCCACGGGCCGGAGCCGGCGCCGCGCCGGAGCGTCCCGGAGGACGAGTTCGAACGGGACCTGCACTTGATGGTGCAGTCGCCGATCATATCCGACGTGCTTTCCCTCTTCCAGAATGATCGAGCGGCGCAGGACGAGAGCAAAAGCCAAGCGTTCGCGGGGGAAATCGTCAGCCTAACCGATGACGACTCGATGGACATGAGCGACGTTGTGACGCCCATCGTCATTATTGACGATTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTADNDVQLSEMVMECSRIKVYDGDGLPDKVCAECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFSISPPPPTRQSSDSAFSTHTDSSNLKSSLNDSKVTPVKRNRKRSVESDIASIGSRSQDYSRPSSSKRVEELKKSHKRPRYSQDSDWDDNGASSYIGETDSDEPLLKKDEFSCPHCPKSFKWKKSLKSHITNIHGQIVNSNLGVDAVVNIPKKSIDPRASDVDSDQLDCGKCGKTFKLKIMLKRHQESCQNSPVKSPVKSPMKELLITLEPIDGAQHRPRKPTCEYCTAQFKTLDNLDKHLRVVHAASRKKDKSENETKGPFICIYCSKDFADYYLYSSHFNTCPMKDSRSTYQCPMCPKVCTRATGYVSHVRKTHYEGSGYKQEPAASPAGFECRMCSKKLATQALLIAHLAAHMSADDDDATVDDFDSRADTVDDSMSVQSAHSSQASQEGPLKCRICDKEFKYKKALASHELKHAEEKVAVKHEPPDKPTELLTETNQEFAREFDSESSQEEGEEDNTCDICEKQFSYKRLLIQHKRTKHTMVAGMKRAKISLKDCSVRCLICDEEMKVSAINEHNQKHISVNIRPRNIYTCAECGQKFKSCSNLANHIKLVHRLKQAEVPKQFAGVDMADFCEVVVTKAEPLDESQTHNGHNEVPLNAAPTVNLTGFTCPICGKKMPTLVSLKRHVNWHSFVGNNLEKKYECFVCKESFKFKGHFKIHMRDHYRDTNLDPALLTCSICNRKSKHLRAAQAHMNYHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKKGESGQNTIVGDMVPNNLDKAMFDGTFTCQLCGKVCDSENSLKCHTSWHKSKTLLYGARHECQMCSLQFTNKRHLELHTRSHYEDPNGPYKCPICGKGYIDEEYHRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICSRYYPDLVKLIRHLRRTHPESKMIKEDPDAPPQRYHSCQLCAKSFVDERRLKMHMEMHQRKPSFIKCKFCGKKTNSMKAHHVHIKTRHMTKKYTENPLKCTQCDEVFVWGYALHHHLRDAHGITETWVAERTDATLEGPLKDLQCAVCLKVLASKGNFERHIDYHNSLRCNYCFDYFSALRFLEGHLAFACDKKKLVGDNDPHPKRVKCEICYKAFSLQVKLDCHLRTQHNITVNKEQRAGRQELVCDYCFKVFENEYALSTHKVYHRTIGYFGCIYCPRKFNTQTAYRKHKNHHFAQLLVDEPKKCEHCDETFVAFREFIYHMRDEHGDEKEWIILPKDSIEETCAICNKTFFNLHRHMDYHEENKCKKCHEYFFSSVDFDNHLCAIESDEERAPGAALPALPYSECRFCFKPITKKDSKKKHDQLHGTSGAISCRFCHLKFKTLDAFNIHSFSHRSRKYNKKPIKCRVCKERFVKYGPFIKHMKIAHKIIKKLHYRALVKPERCVICGGSFPNLHNHYRAHLLNQCQFCFKYFTSSRLFARHECSKIDEDSTKVFTSDENLSALIDSYVPKDLKDDEKYYGFTDDDEEVETNLPPAMTREQDRKAAHGPEPAPRRSVPEDEFERDLHLMVQSPIISDVLSLFQNDRAAQDESKSQAFAGEIVSLTDDDSMDMSDVVTPIVIIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01170802;
- 90% Identity
- -
- 80% Identity
- -