Hros011977.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hedychridium roseum
Gene Symbol
-
Assembly
GCA_963989215.1
Location
OZ022316.1:1821414-1830874[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4.7e-05 0.0039 17.6 1.4 1 23 463 485 463 485 0.96
2 16 1.7e-05 0.0014 19.0 1.9 1 20 491 510 491 513 0.94
3 16 1.2e-05 0.00098 19.5 1.4 1 23 519 541 519 541 0.98
4 16 0.0001 0.0084 16.6 4.6 1 21 547 567 547 569 0.94
5 16 9.1e-06 0.00077 19.9 5.6 1 23 575 597 575 597 0.99
6 16 2.1e-05 0.0018 18.7 5.3 1 23 603 625 603 625 0.97
7 16 7.9e-05 0.0066 16.9 6.9 1 23 631 653 631 653 0.96
8 16 2.8 2.3e+02 2.6 0.3 1 9 659 667 659 667 0.89
9 16 4.7e-07 4e-05 23.9 2.9 1 23 669 691 669 691 0.98
10 16 7e-06 0.00059 20.2 7.8 1 23 697 719 697 719 0.98
11 16 2.2e-05 0.0019 18.6 9.1 1 23 725 747 725 747 0.98
12 16 2.9e-05 0.0024 18.3 7.5 1 23 753 775 753 775 0.98
13 16 0.0014 0.12 13.0 8.8 1 21 781 801 781 803 0.94
14 16 1.1e-05 0.00089 19.6 0.4 1 23 809 831 809 831 0.98
15 16 0.025 2.1 9.0 4.5 1 23 841 863 841 863 0.98
16 16 1.1e-07 9.5e-06 25.9 1.5 1 23 869 891 869 891 0.98

Sequence Information

Coding Sequence
ATGAACAGCGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCGTACCCAGGTGGCTTGGCTACTGCGACCAGTCTTGGCAATGTAGGGAGTACCCCTCATTCATCTGCAGACCTGCGTGTAGGTACAGCTGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTGACCAATCTGTTTCCTGGACCGCTACCTCAGGTCTCCGTCTACCACCACTCCCACCACAATTCCTCACATagaggtggtggaggtgggGAGGCATCTTCCAAAGAGCCAGCTTCTTCATTGAACCAGGAAATGGCGTTGACTTCCAGCTCACATCATCAATCAGCACCATCTCACCATCATCACCAGTCTTCGGTTAGCAGTGGTAGTACCAGTCATCATGGTTCTCTCCAATCAAATGCACAGATTCCAGTCTCTCTTCCTGGCCTGAATCTAGATGGAGCACACATTCCTGCAAGTGTAGGTCACTTGCAAGCAGCGCATGCACAAATGCAACAACAAATGCAGGCACAACAGCAACAGCTgcatcagcagcaacagcagcagcaacaacagcagcagcagcaaccgcagcagcaacagcaacagcagccgcagcagcagcagcaaccacagcagcaacagcagcagtcTCATCATCAGATACAGAATCACCAGAATGCTCAAAACAGCGGGTCAGGCTCCCATTCGCAAACCGCCCAACGGGACGATAATAAAGTGAAAGACGAAGGTGGCAGCTGTACGACAGAGCGTTGCAGTGATAATCAAGTCCACTGTCAAGTGCAGTGCGATCTTCAACTCCAACCATCGCAAGATTTGCAGCAAAGTCTAatgcagcagcaacagcagcaacaacaaatCGGTGTTAGCATAAGTGGGAATTCCACGAATGAAGGTGGAAATCAGAGTAGCTCTGAGAAAcctgagaaggaaaaagaactGCGGCAACTAAATATGACGCAATTTCAAGTTCCGGATTTAAAACCAGGTGGACATATGATGGACGTTAGAACCGCTGATGGGTCGGTTGTTAAAATTAGTGCCGGAAATGAGCAAGACCTGGCTAAAACATTAGGCGTCGAGATGGTACAAAATATGTACAAGGTGAACGTTGAGGATATCAATCAATTATTGGCATATCACGAGGTTTTCGGGAAATTGCAAAGCGAAATAGCAGCAGGGACGACTCTCGTAGGGGGTACAGTGCCTACACAAACTGTCACCACTATACAGAACGGTACACCGATAGTGCAACAGGTGCAACTAAATAAATTCGATATAAAGTCAAGCGATGGCGAGGCGACACCGGGACCAAGTGGTTCGCCTGTATCTGCAGGGAGTCATGCCTGTGAGATTTGTGgaaaaattttccaatttcgTTATCAACTGATTGTTCATCGCAGATATCACACGGAACGTAAACCGTTCACGTGTCAGGTATGTGGTAAAGCATTTTCGAATGCAAACGATTTGACGCGTCACGGAAAATGCCATTTGGGTGGATCTATGTTCACCTGCACCGTCTGCTTTCACGTTTTTGCAAATGCGCCATCGTTAGAACGACACATGAAACGACATGCCACTGATAAGCCGTTCAATTGCACCGTGTGTGGCAAAAGCTTTGCGCGAAAGGAGCATTTAGATAACCATACACGGTGTCATACCGGTGAAACGCCTTACAGGTGCCAGTATTGCTCCAAGACGTTTACTCGTAAGGAGCATATGGTAAATCATGTGCGCAAACACACGGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACATTTTATGAACCATGTTATGTGGCACACAGGAGAAACGCCCCATCATTGTCAAGCCTGTGGCAAGAAGTACACGCGCAAGGAGCATCTTGCCAATCACATGCGTTCGCATACAAACGACACGCCGTTTCGTTGTGAAATATGCGGGGAGACGCCCTTCCGCTGTCAATACTGTCCGAAAGCGTTTACGCGGAAGGACCATCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAATCATTTACTCGTAAGGAGCATTTGACGAATCACGTGAGAATCCACACCGGCGAATCGCCGCATAGGTGTGAATTCTGTCAGAGGACGTTCACTAGGAAAGAACACCTCAATAATCATCTCCGTCAACATACCGGAGATTCGTCTCATTGTTGCAACGTCTGTTCTAAACCGTTTACGCGGAAGGAGCATCTCGTGAATCATATGCGATGCCATACGGGTGAACGTCCGTTTGTTTGCACGGAATGTGGCAAGAGCTTCCCGTTGAAGGGCAATTTGTTATTCCATATGCGATCCCATAACAAAGGCAGCAACGCCGAAAGGCCATTCCGTTGCGACCTCTGCCCGAAGGACTTCATGTGCAAAGGACATTTAGTGTCCCACAGAAGATCCCACTCAGACGAGCGACCGCACAGCTGTCCCGACTGCGGCAAGACGTTTGTCGAGAAGGGCAATATGTTGAGACACATGCGGAAACACTCCGCTGAAGGTCCGCCGACGCAAGTCAGCACACCCTCGGCCATTCCACAATCCGGGGTATTACCGATTCCAGCGGCAGCAGCGGTTCTTGTGGGACATCCACTGGCCCCGCCAGCACCCCCAGTTGTTCCGCAACACACCGTAGTCGTGCCCACCCCGCCTGGTGTTCTTACGTCCTACTAA
Protein Sequence
MNSEQHALPATTQAQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRGGGGGEASSKEPASSLNQEMALTSSSHHQSAPSHHHHQSSVSSGSTSHHGSLQSNAQIPVSLPGLNLDGAHIPASVGHLQAAHAQMQQQMQAQQQQLHQQQQQQQQQQQQQPQQQQQQQPQQQQQPQQQQQQSHHQIQNHQNAQNSGSGSHSQTAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPSQDLQQSLMQQQQQQQQIGVSISGNSTNEGGNQSSSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSGSPVSAGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPFNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHMRKHSAEGPPTQVSTPSAIPQSGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY