Basic Information

Insect: Nomada goodeniana
Gene Symbol: -
Assembly: GCA_963969485.1
Location: OZ018306.1:12585252-12592944[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.7e-05 0.0034 17.7 1.4 1 23 448 470 448 470 0.96

2 16 0.0028 0.21 12.1 1.6 1 20 476 495 476 498 0.94

3 16 1.2e-05 0.00086 19.6 1.4 1 23 504 526 504 526 0.98

4 16 6.8e-05 0.005 17.1 4.4 1 21 532 552 532 554 0.95

5 16 9.2e-06 0.00067 19.9 5.6 1 23 560 582 560 582 0.99

6 16 2.1e-05 0.0015 18.8 5.3 1 23 588 610 588 610 0.97

7 16 8e-05 0.0058 16.9 6.9 1 23 616 638 616 638 0.96

8 16 2.8 2.1e+02 2.6 0.3 1 9 644 652 644 652 0.89

9 16 4.8e-07 3.5e-05 23.9 2.9 1 23 654 676 654 676 0.98

10 16 7.1e-06 0.00052 20.2 7.8 1 23 682 704 682 704 0.98

11 16 2.2e-05 0.0016 18.7 9.1 1 23 710 732 710 732 0.98

12 16 2.9e-05 0.0021 18.3 7.5 1 23 738 760 738 760 0.98

13 16 0.0014 0.1 13.0 8.8 1 21 766 786 766 788 0.94

14 16 1.1e-05 0.00078 19.7 0.4 1 23 794 816 794 816 0.98

15 16 0.026 1.9 9.0 4.5 1 23 826 848 826 848 0.98

16 16 4.1e-07 3e-05 24.1 1.3 1 23 854 876 854 876 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.7e-05	0.0034	17.7	1.4	1	23	448	470	448	470	0.96
2	16	0.0028	0.21	12.1	1.6	1	20	476	495	476	498	0.94
3	16	1.2e-05	0.00086	19.6	1.4	1	23	504	526	504	526	0.98
4	16	6.8e-05	0.005	17.1	4.4	1	21	532	552	532	554	0.95
5	16	9.2e-06	0.00067	19.9	5.6	1	23	560	582	560	582	0.99
6	16	2.1e-05	0.0015	18.8	5.3	1	23	588	610	588	610	0.97
7	16	8e-05	0.0058	16.9	6.9	1	23	616	638	616	638	0.96
8	16	2.8	2.1e+02	2.6	0.3	1	9	644	652	644	652	0.89
9	16	4.8e-07	3.5e-05	23.9	2.9	1	23	654	676	654	676	0.98
10	16	7.1e-06	0.00052	20.2	7.8	1	23	682	704	682	704	0.98
11	16	2.2e-05	0.0016	18.7	9.1	1	23	710	732	710	732	0.98
12	16	2.9e-05	0.0021	18.3	7.5	1	23	738	760	738	760	0.98
13	16	0.0014	0.1	13.0	8.8	1	21	766	786	766	788	0.94
14	16	1.1e-05	0.00078	19.7	0.4	1	23	794	816	794	816	0.98
15	16	0.026	1.9	9.0	4.5	1	23	826	848	826	848	0.98
16	16	4.1e-07	3e-05	24.1	1.3	1	23	854	876	854	876	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACGAATCTGTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAACCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACTTCCAGTTCGCACCATCAGTCAACACCTACACACCATCATCATCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATCCACAGcaGATACCAGTTTCTCTGCCAGGCCTTAATTTAGACGGAGCACACATACCTGCCAGTGTGAGTCATTTGCAGGCAGCACATGCACAAATGCAGCAACAAATGCAGGCAGCACAACAACAACAGTTGCatcaacagcaacagcagcaacctcaacaacagcaacaatcTCATCATCAAATGCAAAATCATCAGAATGCTCAGAACAGTGGACCAACTGCACATAATCAAAACGCACAGAGAGATGATAATAAGGTGAAAGACGAAGGTGGAAGTTGCACAACTGAACGTTGTAGCGACAATCAAGTTCACTGTCAAGTTCAATGCGACCTCCAACTACAAACAACTCAAGAGTTGCAACAAAGTCTCatgcagcagcagcaacaacaacaacagcaacaacaacaacaacaaattGGCGTAAATATAAGTGGAAATTCATCGACCGAAGGTGGAAATCAAAACAATGCTGAAAAGcctgaaaaggaaaaagagctGCGTCAACTAAACATGGCGCAATTCCAAGTACCCGATTTAAAGCCAGGAGGTCATATGATGGATGTTAGAACGGCTGATGGTTCTGTTGTGAAAATTAGTGCTGGAAATGAGCAAGATTTAGCGAAGACCCTAGGTGTTGAAATGGtgcaaaatatgtataagGTTAATGTCGAGGACATTAATCAGCTTTTAGCATATCACGAAGTATTTGGAAAATTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGGAGTACAGTTCCTACTCAAACAGTTACCACAATACAAAATGGAACTCCAATTGTGCAACAAGTACAGTTAAATAAGTTCGATATTAAATCGAGCGATGGTGAAGCAACACCGGGACCAAGTGCTTCGCCTGTGTCAGTTGGAAGTCATGCATGTGAAATATGTGgaaaaatttttcaatttcgttatcAACTTATAGTACATCGTCGATATCACACGGAGAGAAAACCTTTTACTTGCCAGGTGTGTGGCAAAGCCTTCTTGAATGCGAATGATTTGACCCGACATGGGAAGTGTCATCTAGGTGGATCAATGTTTACCTGTACAGTTTGTTTTCATGTGTTTGCAAATGCACCGTCTTTAGAACGTCACATGAAGCGACATGCTACCGATAAACCATACAATTGTACCGTTTGTGGAAAAAGCTTTGCAAGGAAGGAACATTTGGATAATCATACGCGTTGCCATACTGGAGAAACACCTTATAGgTGCCAGTATTGTTCGAAGACGTTTACTAGAAAAGAACATATGGTAAACCATGTTCGCAAACACACGGGCGAAACACCACATCGGTGCGATATTTGTAAAAAGAGCTTTACCCGCAAGGAACATTTTATGAACCATGTTATGTGGCACACGGGAGAAACTCCACATCATTGTCAGGCCTGTGGAAAAAAGTATACACGTAAAGAACATCTTGCAAATCATATGCGTTCACATACCAATGATACACCGTTTCGCTGTGAAATATGCGGTGAGACCCCATTCCGCTGTCAGTACTGTCCAAAAGCATTTACGCGGAAAGATCATCTGGTGAACCATGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTACGAATCCACACCGGTGAATCGCCTCACAGGTGTGAATTCTGCCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCATCGCACTGTTGCAACGTTTGCTCGAAACCATTTACAAGAAAGGAGCATCTTGTAAACCATATGCGATGTCATACTGGTGAACGTCCATTCGTATGCACAGAATGTGGCAAGAGTTTCCCATTGAAGGGCAATCTACTTTTCCACATGCGTTCGCACAATAAAGGCAGTAACGCTGAGAGACCGTTCCGTTGCGACCTTTGCCCAAAAGATTTCATGTGCAAGGGACACTTGGTGTCTCACAGACGATCTCATTCGGACGAACGACCGCACAGCTGTCCAGATTGCGGCAAAACATTTGTCGAGAAGGGCAATATGTTGAGACATTTGAGAAAACACGCTGCTGAAGGGCCTCCTACGCAAGTCAGCACACCGTCAGCCATTCCTCAATCTGGTGTTCTGCCGATACCAGCGGCTGCAGTCCTAGTAGGCCATCCCCTGGCACCGCCTGCGCCGCCCGTAGTACCGCAACACACGGTTGTTGTGCCTACTCCTCCGGGTGTATTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNPQQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQMQAAQQQQLHQQQQQQPQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTTQELQQSLMQQQQQQQQQQQQQQIGVNISGNSSTEGGNQNNAEKPEKEKELRQLNMAQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00773969;
80% Identity: -