Basic Information

Insect: Lasioglossum vierecki
Gene Symbol: -
Assembly: GCA_028455595.1
Location: CM052335.1:2876483-2886724[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5e-05 0.0042 17.6 1.4 1 23 449 471 449 471 0.96

2 16 0.003 0.25 12.1 1.6 1 20 477 496 477 499 0.94

3 16 1.3e-05 0.0011 19.5 1.4 1 23 505 527 505 527 0.98

4 16 7.3e-05 0.0061 17.1 4.4 1 21 533 553 533 555 0.95

5 16 9.8e-06 0.00083 19.9 5.6 1 23 561 583 561 583 0.99

6 16 2.3e-05 0.0019 18.8 5.3 1 23 589 611 589 611 0.97

7 16 8.5e-05 0.0071 16.9 6.9 1 23 617 639 617 639 0.96

8 16 3 2.5e+02 2.6 0.3 1 9 645 653 645 653 0.89

9 16 5.1e-07 4.3e-05 23.9 2.9 1 23 655 677 655 677 0.98

10 16 7.6e-06 0.00063 20.2 7.8 1 23 683 705 683 705 0.98

11 16 2.4e-05 0.002 18.7 9.1 1 23 711 733 711 733 0.98

12 16 3.1e-05 0.0026 18.3 7.5 1 23 739 761 739 761 0.98

13 16 0.0015 0.13 13.0 8.8 1 21 767 787 767 789 0.94

14 16 1.1e-05 0.00096 19.7 0.4 1 23 795 817 795 817 0.98

15 16 0.027 2.3 9.0 4.5 1 23 827 849 827 849 0.98

16 16 4.4e-07 3.7e-05 24.1 1.3 1 23 855 877 855 877 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5e-05	0.0042	17.6	1.4	1	23	449	471	449	471	0.96
2	16	0.003	0.25	12.1	1.6	1	20	477	496	477	499	0.94
3	16	1.3e-05	0.0011	19.5	1.4	1	23	505	527	505	527	0.98
4	16	7.3e-05	0.0061	17.1	4.4	1	21	533	553	533	555	0.95
5	16	9.8e-06	0.00083	19.9	5.6	1	23	561	583	561	583	0.99
6	16	2.3e-05	0.0019	18.8	5.3	1	23	589	611	589	611	0.97
7	16	8.5e-05	0.0071	16.9	6.9	1	23	617	639	617	639	0.96
8	16	3	2.5e+02	2.6	0.3	1	9	645	653	645	653	0.89
9	16	5.1e-07	4.3e-05	23.9	2.9	1	23	655	677	655	677	0.98
10	16	7.6e-06	0.00063	20.2	7.8	1	23	683	705	683	705	0.98
11	16	2.4e-05	0.002	18.7	9.1	1	23	711	733	711	733	0.98
12	16	3.1e-05	0.0026	18.3	7.5	1	23	739	761	739	761	0.98
13	16	0.0015	0.13	13.0	8.8	1	21	767	787	767	789	0.94
14	16	1.1e-05	0.00096	19.7	0.4	1	23	795	817	795	817	0.98
15	16	0.027	2.3	9.0	4.5	1	23	827	849	827	849	0.98
16	16	4.4e-07	3.7e-05	24.1	1.3	1	23	855	877	855	877	0.97

Sequence Information

Coding Sequence: ATGAATAGCGAGCAGCATGCGTTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAATGCGGGTCAAAGTGGTCGTCCTTCGTATCCAGGTGGTTTGGCTACAGCAGCTAGTCTTGGCAATGTAGGGGGTGCCCCACATTCATCCGCGGACCTGCGTGTAGGTACAGCAGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTGACCAATCTGTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCGCACAGGAGTAGTGGAGGCGGAGAGGCGTCTTCCAAAGAGCCAGCCTCTTCGTTGAACCAAGAAATGGCGTTAACTTCCAGCTCGCATCATCAGTCGACAACTGCGCATCATCATCATCAACCTACTGTTAGCGCTACCGGTCATCATAGCTCTTTGCAACCAAATCCTCAGCAGATTCCAGTGTCTCTACCGGGGCTTAACCTAGACGGTGCGCATATTCCTACCAGTGTGAGTCATTTACAGGCAGCACATGCACAAATGCAACAGCAAATCCAGGCACAACAGCAGCAGCTGCATCAGCAACAACAGCCGCAGCAGCAGCAACAACAACAACCGCAACAGCAACCTCAGCAACAACAAAACCATCATCAAATGCAAAATCATCAGAATGCTCAGAATAATGGACCAACTGCACACAATCAAAACGCACAGAGGGACGACAACAAAGTGAAGGACGAGGGAGGAAGTTGTACAACGGAGCGTTGCAGTGACAATCAGGTTCACTGTCAAGTTCAATGCGATCTGCAGCTGCAAACGTCGCAGGATATACAACAGAGCCTTATGCAGCAGCAACAACAGCAACAAATCGGGGTCAACATCAGTGGAAACTCCTCGTCCGAAGGCGGAACGCAAAACAATAGCGAGAAGCCTGAAAAGGAGAAGGAGTTGCGTCAATTAAATATGACTCAATTCCAAGTGCCGGATCTAAAACCGGGAGGCCATATGATGGACGTGAGAACAGCCGACGGTTCCGTTGTGAAAATCAGCGCTGGGAACGAGCAAGATCTCGCGAAAACTCTCGGCGTGGAAATGGTGCAGAACATGTACAAGGTTAACGTCGAGGACATTAATCAGCTTCTAGCGTATCACGAAGTATTCGGGAAATTACAGAGCGAAATAGCAGCTGGTACAACGTTAGTCGGAAGCACAGTTCCTACGCAAACGGTGACCACTATACAGAACGGAACGCCGATCGTGCAACAAGTTCAGTTAAACAAGTTCGACATTAAATCTAGCGACGGAGAGGCCACGCCGGGACCGAGCGCATCCCCCGTTTCCGTCGGAAGCCACGCCTGCGAAATATGCGGAAAGATTTTCCAATTTCGATACCAGCTTATCGTGCACCGACGCTATCACACCGAACGGAAACCTTTTACTTGTCAGGTGTGCGGCAAAGCGTTCCTAAACGCAAACGACCTGACGCGTCATGGAAAATGCCACTTAGGCGGATCAATGTTTACCTGCACGGTTTGTTTTCACGTGTTCGCGAACGCACCATCGTTGGAACGCCACATGAAACGTCATGCCACCGACAAGCCGTACAATTGTACTGTGTGTGGCAAAAGTTTCGCCAGAAAGGAGCATTTGGATAATCACACGCGTTGCCACACCGGAGAAACGCCTTACAGATGCCAGTACTGTTCGAAAACGTTTACCAGAAAGGAACACATGGTGAATCACGTTCGCAAACATACGGGTGAGACCCCGCATCGATGTGATATTTGCAAGAAAAGCTTCACCCGTAAGGAACACTTTATGAACCACGTGATGTGGCACACTGGAGAAACTCCTCATCACTGCCAAGCTTGTGGCAAAAAGTACACCCGCAAAGAACATCTCGCTAACCATATGCGCTCGCATACCAATGACACGCCGTTCCGATGCGAAATATGCGGGGAGACGCCATTCCGCTGTCAATACTGTCCGAAAGCATTTACGCGAAAGGACCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACGAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACATACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTAACGAATCATGTTCGCATTCACACCGGCGAATCACCGCACAGGTGTGAATTTTGTCAGAGGACGTTCACTAGGAAAGAACACCTCAATAATCATCTCCGACAACATACCGGAGACTCGTCCCATTGTTGTAACGTCTGTTCAAAACCGTTCACAAGAAAGGAACATCTCGTGAACCATATGCGATGTCACACCGGCGAGCGTCCATTCGTGTGCACGGAGTGCGGCAAGAGTTTCCCTCTGAAGGGTAACCTTCTGTTCCACATGCGTTCGCACAACAAAGGTAGCAACGCGGAGCGGCCGTTCCGTTGCGATCTATGCCCGAAAGACTTCATGTGCAAAGGGCATCTGGTGTCTCACAGAAGGTCGCACTCGGACGAGCGGCCGCACAGTTGCCCGGACTGTGGAAAGACATTCGTTGAGAAGGGCAACATGTTGAGACATTTGAGGAAACACGCGGCGGAAGGACCGCCGACGCAAGTCAGCACACCGTCGGCCATTCCTCAATCTGGCGTTCTGCCGATCCCGGCGGCGGCCGTTCTCGTCGGTCATCCTCTGGCGCCACCAGCGCCGCCGGTTGTGCCGCAACACACGGTCGTCGTGCCGACTCCACCCGGTGTATTAACCTCTTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATAASLGNVGGAPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTTAHHHHQPTVSATGHHSSLQPNPQQIPVSLPGLNLDGAHIPTSVSHLQAAHAQMQQQIQAQQQQLHQQQQPQQQQQQQPQQQPQQQQNHHQMQNHQNAQNNGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQDIQQSLMQQQQQQQIGVNISGNSSSEGGTQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00773969;
80% Identity: -