Basic Information

Insect: Hartigia nigra
Gene Symbol: -
Assembly: GCA_031001745.1
Location: JARPRG010000131.1:320773-330215[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 9.7e-05 0.0065 16.9 1.4 1 23 440 462 440 462 0.96

2 16 2.1e-05 0.0014 19.0 1.9 1 20 468 487 468 490 0.94

3 16 1.5e-05 0.001 19.4 1.2 1 23 496 518 496 518 0.98

4 16 7.9e-05 0.0053 17.2 4.4 1 21 524 544 524 546 0.95

5 16 2.4e-05 0.0016 18.8 4.6 1 23 552 574 552 574 0.99

6 16 2.4e-05 0.0016 18.8 5.3 1 23 580 602 580 602 0.97

7 16 9.3e-06 0.00062 20.1 7.1 1 23 608 630 608 630 0.97

8 16 3.3 2.2e+02 2.6 0.3 1 9 636 644 636 644 0.89

9 16 5.5e-07 3.7e-05 23.9 2.9 1 23 646 668 646 668 0.98

10 16 8.2e-06 0.00055 20.3 7.8 1 23 674 696 674 696 0.98

11 16 2.6e-05 0.0017 18.7 9.1 1 23 702 724 702 724 0.98

12 16 3.4e-05 0.0023 18.3 7.5 1 23 730 752 730 752 0.98

13 16 0.0016 0.11 13.0 8.8 1 21 758 778 758 780 0.94

14 16 1.2e-05 0.00083 19.7 0.4 1 23 786 808 786 808 0.98

15 16 0.03 2 9.1 4.5 1 23 818 840 818 840 0.98

16 16 4.8e-07 3.2e-05 24.1 1.3 1 23 846 868 846 868 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	9.7e-05	0.0065	16.9	1.4	1	23	440	462	440	462	0.96
2	16	2.1e-05	0.0014	19.0	1.9	1	20	468	487	468	490	0.94
3	16	1.5e-05	0.001	19.4	1.2	1	23	496	518	496	518	0.98
4	16	7.9e-05	0.0053	17.2	4.4	1	21	524	544	524	546	0.95
5	16	2.4e-05	0.0016	18.8	4.6	1	23	552	574	552	574	0.99
6	16	2.4e-05	0.0016	18.8	5.3	1	23	580	602	580	602	0.97
7	16	9.3e-06	0.00062	20.1	7.1	1	23	608	630	608	630	0.97
8	16	3.3	2.2e+02	2.6	0.3	1	9	636	644	636	644	0.89
9	16	5.5e-07	3.7e-05	23.9	2.9	1	23	646	668	646	668	0.98
10	16	8.2e-06	0.00055	20.3	7.8	1	23	674	696	674	696	0.98
11	16	2.6e-05	0.0017	18.7	9.1	1	23	702	724	702	724	0.98
12	16	3.4e-05	0.0023	18.3	7.5	1	23	730	752	730	752	0.98
13	16	0.0016	0.11	13.0	8.8	1	21	758	778	758	780	0.94
14	16	1.2e-05	0.00083	19.7	0.4	1	23	786	808	786	808	0.98
15	16	0.03	2	9.1	4.5	1	23	818	840	818	840	0.98
16	16	4.8e-07	3.2e-05	24.1	1.3	1	23	846	868	846	868	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCTCAGCAAGAGGAAGTAAACTCGGGTCAAAGTGGTCGTCCTTCGTACCCAGGTGGTTCGACTAGTTCAAGCAGTCACGGCAATGTAGGAAGTACACGGAATTCCTCGGAGGAGCAACGTGTAGGTACAGCAGTAGCGTTAGCTTCCTCGGTAGCTAAATATTGGCTCTTCACCAATCTGTTTCCCGGGCCGCTACCCCAGGTCTCGGTCTACCACCATAACCACCAGATCTCCTCGGGTAGGAGTGGTGATGGTGTTGAGGCATCTTCAAAAGAGTCTTCGTTTAACCAGGAAATGGCGTTGACCTCGAATTCGCATCATCAGTCGACGACTtcccatcatcatcatcaagcTTCGATTAGCGGCGCTGGTCATCACGGCTCTCTGCAGTCCAATCAGCAGATTCCAGTCTCTCTTCCTGGCCTTAGTCTAGACGGGACTCACATTCCCGCAAGTGTCAGTCACTTGCAGGCGGCGCATGCTCAAATGCAGCAGCAGATGCAGtcgcaacagcagcagcagcagcagcagctgcaCCAGCAGccacagcagcaacagcaacaggcTCATCACCAGATGCAACAGAGTCATCAGAATGCACAGAACAGTGGACCAAGCTCGCAGAGTCAGAACTCACAACGGGATGATAATAAAGTAAAGGACGAGGGTGGTAGTTGCACTACGGAACGGTGCAGCGATAATCAAGTCCATTGTCAGGTCCAGTGTGATCTGCAGCTACAGCCGCCACAGGATCTTCAGCAGAGCCTcatgcagcagcagcaacagcaacaacaaattGGGGTCAACATTAGTGGCAGTTCCGCTGCAGAAAGCGGAACTCAGAACAATTCAGACAAGCccgagaaggagaaagaattGCGACAGCTTAACATGGCACAATTTCAACTTCCTGATCTTAAACCTGGGGGTCATATGATGGACGTTAGAACAGCCGACGGCTCGGTCGTTAAAATAAGTGCTGGAAACGAACAAGATCTTGCAAAGACTCTTGGTGTAGAGATGGTACAAAATATGTACAAGGTCAACGTCGAGGATATCAATCAACTGTTGGCCTATCACGAGGTCTTCGGGAAGCTGCAAAGTGAGATAGCAGCTGGCACCACTCTCGTAGGTGGTACCGTACCTACGCAAACGGTCACCACCATCCAAAATGGAACACCGATAGTACAGCAAGTTCAGCTGAACAAGTTTGACATAAAGACAAGCGACGGAGAGGCCACGCCCGGACCAAGTGCCTCGCCCGTATCCGTTGGCAGTCATGCCTGCGAGGTCTGCGGCAAGATCTTCCAGTTTCGCTATCAGCTTATCGTGCACCGAAGATATCATACTGAAAGGAAGCCATTCACGTGCCAGgtCTGCGGAAAAGCTTTCACCAATGCCAATGATCTAACTCGCCATGGTAAATGTCATCTGGGTGGATCCATGTTTACCTGTTCAGTTTGCTTCCACGTGTTCGCTAACGCGCCATCTTTGGAGCGTCATATGAAGCGTCACGCTACCGACAAGCCCTACAATTGTACAGTGTGCGGAAAGAGTTTCGCTAGGAAGGAACACCTGGACAACCATACTCGCTGTCACACCGGCGAAACACCTTACAGGTGTCAGTATTGCGCGAAAACTTTCACTCGCAAGGAGCACATGGTGAATCATGTTCGCAAGCATACTGGCGAGACTCCACATCGCTGCGACATATGCAAGAAGAGCTTCACTCGCAAGGAACACTTCATGAATCATGTCATGTGGCATACTGGTGAGACTCCGCATCATTGCCAGGTCTGCGGAAAAAAATACACGCGCAAGGAGCACCTTGCTAATCATATGCGTTCCCATACCAACGACACGCCGTTCCGATGCGAGATTTGTGGGGAGACGCCCTTCCGCTGTCAATACTGTCCGAAAGCGTTTACGCGAAAGGACCATCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAGTCGCCACATCGATGCCACTTCTGCTCCAAGTCATTTACACGTAAGGAGCACTTGACGAATCACGTCAGAATCCACACCGGTGAATCGCCACATAGGTGTGAATTCTGTCAGAGGACGTTCACTCGGAAAGAACACCTCAATAATCATCTCCGTCAACATACCGGAGATTCGTCACATTGTTGCAATGTGTGCTCCAAACCGTTCACGAGAAAGGAACATCTCGTGAACCACATGCGATGTCACACTGGCGAACGTCCGTTTGTCTGCACCGAGTGTGGCAAGAGTTTTCCGCTCAAGGGAAATCTGCTATTCCATATGCGATCCCACAATAAGGGAAGCAACGCTGAGAGACCGTTCCGCTGTGACCTTTGTCCCAAAGACTTCATGTGCAAGGGTCATCTGGTCTCGCACAGAAGATCCCACTCGGACGAGCGACCGCACAGCTGTCCGGACTGTGGCAAGACCTTCGTCGAGAAGGGCAACATGCTGAGACATCTACGAAAGCACGCTGCGGAAGGTCCACCTACGCAGGTCAGCACACCCTCGGCAATTCCTCAACCGGTTCTGCCGATACCCGCTGCCGCGGTACTGGTTGGACATCCTCTGGCTGCTCCGCAACCGCCTCCGGTCGTTCCTCAGCATACCGTCGTGGTTCCAACACCTCCTGGTGTACTGACGTCGTACTAA
Protein Sequence: MNSEQHALPATTQAQQEEVNSGQSGRPSYPGGSTSSSSHGNVGSTRNSSEEQRVGTAVALASSVAKYWLFTNLFPGPLPQVSVYHHNHQISSGRSGDGVEASSKESSFNQEMALTSNSHHQSTTSHHHHQASISGAGHHGSLQSNQQIPVSLPGLSLDGTHIPASVSHLQAAHAQMQQQMQSQQQQQQQQLHQQPQQQQQQAHHQMQQSHQNAQNSGPSSQSQNSQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQIGVNISGSSAAESGTQNNSDKPEKEKELRQLNMAQFQLPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNANDLTRHGKCHLGGSMFTCSVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQPVLPIPAAAVLVGHPLAAPQPPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00773969;
80% Identity: -