Psmy002277.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- -
- Assembly
- GCA_030142225.1
- Location
- JARQST010000138.1:215046-224727[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0001 0.0073 16.9 1.4 1 23 442 464 442 464 0.96 2 16 2.1e-05 0.0015 19.0 1.9 1 20 470 489 470 492 0.94 3 16 1.5e-05 0.0011 19.4 1.2 1 23 498 520 498 520 0.98 4 16 8.1e-05 0.0059 17.2 4.4 1 21 526 546 526 548 0.95 5 16 2.5e-05 0.0018 18.8 4.6 1 23 554 576 554 576 0.99 6 16 2.5e-05 0.0018 18.8 5.3 1 23 582 604 582 604 0.97 7 16 9.6e-06 0.0007 20.1 7.1 1 23 610 632 610 632 0.97 8 16 3.4 2.5e+02 2.6 0.3 1 9 638 646 638 646 0.89 9 16 5.7e-07 4.1e-05 23.9 2.9 1 23 648 670 648 670 0.98 10 16 8.4e-06 0.00062 20.3 7.8 1 23 676 698 676 698 0.98 11 16 2.7e-05 0.0019 18.7 9.1 1 23 704 726 704 726 0.98 12 16 3.5e-05 0.0025 18.3 7.5 1 23 732 754 732 754 0.98 13 16 0.0017 0.12 13.0 8.8 1 21 760 780 760 782 0.94 14 16 1.3e-05 0.00093 19.7 0.4 1 23 788 810 788 810 0.98 15 16 0.03 2.2 9.1 4.5 1 23 820 842 820 842 0.98 16 16 4.9e-07 3.6e-05 24.1 1.3 1 23 848 870 848 870 0.97
Sequence Information
- Coding Sequence
- ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCTCAGCAAGAGGAAGTAAACTCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTCGACTAGCTCAAGCAGTCACAGCAATGTAGGAAGTACCCGGAATTCCTCTGAGGAGCAGCGTGTAGGTACAGCAGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGCTCTTCACCAATCTGTTTCCCGGGCCGCTACCCCAGGTCTCGGTCTACCACCATAACCACCAGATCTCCTCGAGTAGGAGTGGTGGTGGTGTTGAGGCATCTTCAAAAGAGTCTTCGTTTAACCAGGAAATGGCGTTGACCTCGAATTCGCATCATCAGTCGACGACTtcgcatcatcatcatcatcaagcTTCGATTAGCGGCGCTGGTCATCATGGCTCTCTGCAGTCCAATCAGCAGATTCCAGTCTCTCTTCCTGGCCTTAGCCTAGACGGGACGCACATTCCCGCAAGTGTCAGTCACTTGCAGGCGGCGCACGCTCAAATGCAGCAGCAGATGCAGtcgcaacagcagcaacagctgCACCAGCAgccacagcagcaacagcagcagcaacaggcTCATCATCAGATGCAGCAGAGCCATCAGAATGCACAGAACAGTGGACCAAGCTCGCAGAGTCAAAACTCACAACGGGATGATAATAAAGTAAAGGACGAGGGTGGTAGTTGCACTACGGAACGGTGCAGCGATAATCAAGTCCATTGTCAGGTCCAGTGTGATCTGCAGCTACAGCCGCCACAGGATCTTCAGCAGAGCCTcatgcagcagcagcagcagcaacagcaacaacaaataGGTGTCAACATTAGTGGGAGTTCCACTGCAGAAAGCGGAACTCAGAACAATTCAGAGAAGCccgagaaggagaaggaaatgCGTCAGCTTAACATGTCACAATTTCAACTTCCTGACCTTAAACCCGGTGGTCATATGATGGACGTTAGAACAGCCGACGGCTCGGTCGTTAAAATAAGCGCTGGAAACGAACAAGATCTTGCAAAGACTCTTGGCGTAGAGATGGTACAAAATATGTACAAGGTAAATGTCGAGGATATCAATCAACTGTTGGCGTATCACGAGGTCTTCGGGAAGCTGCAAAGTGAGATAGCAGCTGGCACCACTCTCGTGGGTGGTACCGTACCCACGCAAACGGTCACCACCATCCAAAATGGAACACCGATAGTACAGCAAGTTCAGCTAAACAAGTTTGACATAAAGACAAGCGACGGAGAGGCCACGCCCGGACCAAGTGCCTCGCCCGTATCTGTTGGCAGCCATGCCTGCGAGGTCTGCGGCAAGATCTTCCAGTTTCGCTATCAGCTTATCGTGCACCGAAGATACCATACTGAAAGGAAGCCATTCACGTGCCAGgtCTGCGGAAAGGCATTCACCAATGCCAACGATCTAACTCGTCATGGTAAATGTCACCTGGGTGGATCCATGTTCACCTGTTCAGTTTGCTTTCACGTGTTCGCTAACGCGCCGTCCTTGGAGCGCCATATGAAGCGTCACGCTACCGACAAGCCGTACAATTGTACCGTGTGTGGCAAGAGTTTCGCTAGaaaggaacacctggacaacCATACTCGCTGTCATACCGGCGAAACACCTTACAGGTGTCAGTATTGCGCCAAAACTTTCACACGCAAGGAGCACATGGTGAACCATGTTCGCAAGCATACTGGCGAGACCCCGCATCGCTGCGACATATGCAAGAAGAGCTTCACTCGCAAGGAACACTTCATGAATCATGTCATGTGGCACACTGGTGAGACTCCGCACCATTGCCAGGTCTGCGGAAAGAAGTACACGCGCAAGGAGCACCTTGCCAATCATATGCGTTCTCATACCAACGACACGCCGTTCCGATGCGAGATTTGCGGGGAGACGCCCTTCCGCTGTCAATACTGTCCGAAAGCGTTTACGCGAAAGGACCATCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAGTCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACACGTAAGGAGCACTTGACGAATCACGTCAGAATCCACACCGGTGAATCGCCACATAGGTGTGAATTCTGTCAGAGGACGTTCACTCGGAAAGAACACCTCAATAATCATCTCCGTCAACATACCGGAGATTCGTCACATTGTTGCAATGTGTGCTCCAAACCGTTCACGAGAAAGGAACATCTCGTGAACCACATGCGATGTCACACTGGCGAACGTCCGTTTGTCTGCACCGAGTGCGGCAAGAGTTTCCCGCTCAAGGGAAATCTGCTATTCCATATGCGATCCCACAATAAGGGAAGCAACGCGGAGAGACCGTTCCGCTGTGACCTTTGTCCCAAAGACTTCATGTGCAAGGGTCACCTGGTCTCGCACAGAAGATCCCACTCGGACGAGCGACCACACAGCTGTCCGGACTGCGGTAAGACCTTCGTCGAGAAGGGCAACATGCTGAGACATCTACGAAAGCACGCCGCGGAAGGTCCACCTACGCAAGTCAGCACGCCCTCGGCAATTCCTCAACCTGTTCTGCCGATACCCGCTGCCGCGGTACTTGTTGGACATCCTCTGGCTGCTCCGCAACCGCCTCCAGTTGTTCCTCAGCATACCGTCGTGGTTCCAACACCTCCTGGTGTCCTCACGTCGTACTAA
- Protein Sequence
- MNSEQHALPATTQAQQEEVNSGQSGRPSYPGGSTSSSSHSNVGSTRNSSEEQRVGTAVALASSVAKYWLFTNLFPGPLPQVSVYHHNHQISSSRSGGGVEASSKESSFNQEMALTSNSHHQSTTSHHHHHQASISGAGHHGSLQSNQQIPVSLPGLSLDGTHIPASVSHLQAAHAQMQQQMQSQQQQQLHQQPQQQQQQQQAHHQMQQSHQNAQNSGPSSQSQNSQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQIGVNISGSSTAESGTQNNSEKPEKEKEMRQLNMSQFQLPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNANDLTRHGKCHLGGSMFTCSVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQPVLPIPAAAVLVGHPLAAPQPPPVVPQHTVVVPTPPGVLTSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00899003;
- 90% Identity
- iTF_00773969;
- 80% Identity
- -