Basic Information

Insect: Nomada ruficornis
Gene Symbol: -
Assembly: GCA_951802695.1
Location: OX637854.1:7690159-7697823[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5e-05 0.0052 17.6 1.4 1 23 455 477 455 477 0.96

2 16 0.003 0.31 12.0 1.6 1 20 483 502 483 505 0.94

3 16 1.3e-05 0.0013 19.5 1.4 1 23 511 533 511 533 0.98

4 16 7.3e-05 0.0075 17.1 4.4 1 21 539 559 539 561 0.95

5 16 9.8e-06 0.001 19.9 5.6 1 23 567 589 567 589 0.99

6 16 2.2e-05 0.0023 18.7 5.3 1 23 595 617 595 617 0.97

7 16 8.5e-05 0.0088 16.9 6.9 1 23 623 645 623 645 0.96

8 16 3 3.1e+02 2.6 0.3 1 9 651 659 651 659 0.89

9 16 5.1e-07 5.2e-05 23.9 2.9 1 23 661 683 661 683 0.98

10 16 7.6e-06 0.00078 20.2 7.8 1 23 689 711 689 711 0.98

11 16 2.4e-05 0.0025 18.7 9.1 1 23 717 739 717 739 0.98

12 16 3.1e-05 0.0032 18.3 7.5 1 23 745 767 745 767 0.98

13 16 0.0015 0.15 13.0 8.8 1 21 773 793 773 795 0.94

14 16 1.1e-05 0.0012 19.7 0.4 1 23 801 823 801 823 0.98

15 16 0.027 2.8 9.0 4.5 1 23 833 855 833 855 0.98

16 16 4.4e-07 4.5e-05 24.1 1.3 1 23 861 883 861 883 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5e-05	0.0052	17.6	1.4	1	23	455	477	455	477	0.96
2	16	0.003	0.31	12.0	1.6	1	20	483	502	483	505	0.94
3	16	1.3e-05	0.0013	19.5	1.4	1	23	511	533	511	533	0.98
4	16	7.3e-05	0.0075	17.1	4.4	1	21	539	559	539	561	0.95
5	16	9.8e-06	0.001	19.9	5.6	1	23	567	589	567	589	0.99
6	16	2.2e-05	0.0023	18.7	5.3	1	23	595	617	595	617	0.97
7	16	8.5e-05	0.0088	16.9	6.9	1	23	623	645	623	645	0.96
8	16	3	3.1e+02	2.6	0.3	1	9	651	659	651	659	0.89
9	16	5.1e-07	5.2e-05	23.9	2.9	1	23	661	683	661	683	0.98
10	16	7.6e-06	0.00078	20.2	7.8	1	23	689	711	689	711	0.98
11	16	2.4e-05	0.0025	18.7	9.1	1	23	717	739	717	739	0.98
12	16	3.1e-05	0.0032	18.3	7.5	1	23	745	767	745	767	0.98
13	16	0.0015	0.15	13.0	8.8	1	21	773	793	773	795	0.94
14	16	1.1e-05	0.0012	19.7	0.4	1	23	801	823	801	823	0.98
15	16	0.027	2.8	9.0	4.5	1	23	833	855	833	855	0.98
16	16	4.4e-07	4.5e-05	24.1	1.3	1	23	861	883	861	883	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACGAATCTGTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAACCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACATCCAGTTCGCACCATCAGTCAACACCTACACACCATCATCATCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATCCACAGcaGATACCAGTTTCTCTGCCAGGCCTTAATTTAGACGGAGCACACATACCTGCCAGTGTGAGTCATTTGCAGGCAGCACATGCACAAATGCAGCAACAAATGCAGGCAgcacaacaacaacaacagctgcatcaacagcagcaacagcaacagcaacaacctcaacaacagcaacaatcTCACCATCAAATGCAAAATCATCAGAATGCTCAGAACAGTGGACCAACTGCACATAATCAAAACGCACAGAGAGATGATAATAAGGTGAAAGACGAAGGTGGAAGTTGCACAACTGAACGTTGTAGTGACAATCAAGTTCACTGTCAAGTTCAATGCGACCTCCAATTGCAAACAACTCAAGAGTTGCAACAAAGTCTCatgcagcagcagcaacagcagcagcagcaacaacaacaacagcaacagcaacaaatTGGCGTAAATATAAGTGGAAATACATCGACCGAAGGTGGAAATCAAAACAATGCTGAAAAGcctgaaaaggaaaaagaactGCGTCAACTAAACATGGCGCAATTCCAAGTACCCGATTTAAAACCAGGAGGTCATATGATGGATGTTAGAACGGCTGATGGTTCTGTTGTGAAAATCAGTGCTGGAAACGAGCAAGATTTAGCGAAGACCCTAGGTGTTGAAATGGTGCAAAATATGTATAAGGTTAATGTCGAGGACATTAATCAGCTTTTAGCATATCACGAAGTATTTGGAAAATTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGAAGTACGGTTCCTACTCAAACAGTTACCACAATACAAAATGGAACTCCAATTGTGCAACAAGTACAATTAAATAAGTTCGATATTAAATCGAGCGACGGTGAAGCAACACCGGGACCAAGTGCTTCGCCTGTGTCAGTTGGAAGTCATGCATGTGAAATATGTGGAAAAATTTTTCAGTTTCGTTATCAACTTATCGTACATCGTCGATATCACACGGAGAGAAAACCTTTTACTTGCCAGGTGTGTGGCAAAGCCTTCTTGAATGCCAATGATTTGACCCGACATGGGAAGTGTCATCTAGGTGGATCAATGTTTACCTGTACAGTTTGTTTTCATGTGTTTGCAAATGCACCGTCTTTAGAACGTCACATGAAGCGACATGCTACCGATAAACCATACAATTGTACCGTTTGCGGAAAAAGCTTTGCACGGAAGGAACATTTGGATAATCATACGCGTTGCCATACTGGAGAAACACCTTATAGgTGCCAGTACTGTTCGAAGACGTTTACTAGAAAAGAACATATGGTAAACCATGTTCGCAAGCACACGGGCGAAACACCGCATCGGTGCGATATTTGTAAAAAGAGCTTTACCCGCAAAGAACATTTTATGAACCATGTTATGTGGCACACGGGAGAAACTCCACATCATTGCCAGGCCTgtggaaaaaaatatacacgTAAAGAACATCTCGCAAATCATATGCGTTCGCATACCAATGATACACCGTTTCGCTGTGAAATATGCGGTGAGACCCCATTCCGCTGTCAGTACTGTCCAAAAGCATTTACGCGGAAAGATCATCTGGTGAACCATGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTACGAATCCACACCGGTGAATCACCTCACAGGTGTGAATTCTGCCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCGTCGCACTGTTGCAACGTTTGCTCGAAACCGTTTACAAGAAAGGAGCATCTTGTAAACCATATGCGATGTCATACTGGTGAACGTCCATTCGTATGCACAGAATGTGGCAAAAGTTTCCCATTGAAGGGCAATCTACTTTTCCACATGCGTTCGCACAATAAAGGTAGTAACGCTGAGAGACCGTTCCGTTGCGACCTTTGCCCAAAGGATTTCATGTGCAAGGGACACCTGGTGTCTCACAGACGATCTCATTCGGACGAACGACCGCACAGCTGTCCAGATTGCGGCAAAACATTTGTCGAGAAGGGCAATATGTTGAGACATTTGAGAAAACACGCGGCTGAAGGGCCTCCTACGCAAGTCAGCACACCGTCAGCCATTCCTCAGTCTGGTGTTCTGCCGATACCAGCGGCTGCAGTCCTAGTAGGCCATCCCCTGGCACCACCTGCGCCGCCCGTAGTGCCGCAACACACGGTTGTTGTGCCTACTCCTCCGGGTGTATTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNPQQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQMQAAQQQQQLHQQQQQQQQQPQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTTQELQQSLMQQQQQQQQQQQQQQQQQIGVNISGNTSTEGGNQNNAEKPEKEKELRQLNMAQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00773969;
80% Identity: -