Basic Information

Insect: Vespula germanica
Gene Symbol: -
Assembly: GCA_905340365.1
Location: HG996531.1:9125495-9134633[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.8e-05 0.003 17.6 1.4 1 23 450 472 450 472 0.96

2 16 1.7e-05 0.0011 19.1 1.9 1 20 478 497 478 500 0.94

3 16 1.2e-05 0.00074 19.5 1.4 1 23 506 528 506 528 0.98

4 16 7e-05 0.0043 17.1 4.4 1 21 534 554 534 556 0.95

5 16 9.4e-06 0.00058 19.9 5.6 1 23 562 584 562 584 0.99

6 16 2.2e-05 0.0013 18.7 5.3 1 23 590 612 590 612 0.97

7 16 8.2e-05 0.005 16.9 6.9 1 23 618 640 618 640 0.96

8 16 2.9 1.8e+02 2.6 0.3 1 9 646 654 646 654 0.89

9 16 4.9e-07 3e-05 23.9 2.9 1 23 656 678 656 678 0.98

10 16 7.2e-06 0.00044 20.2 7.8 1 23 684 706 684 706 0.98

11 16 2.3e-05 0.0014 18.7 9.1 1 23 712 734 712 734 0.98

12 16 3e-05 0.0018 18.3 7.5 1 23 740 762 740 762 0.98

13 16 0.0014 0.088 13.0 8.8 1 21 768 788 768 790 0.94

14 16 1.1e-05 0.00067 19.7 0.4 1 23 796 818 796 818 0.98

15 16 0.026 1.6 9.0 4.5 1 23 828 850 828 850 0.98

16 16 4.2e-07 2.6e-05 24.1 1.3 1 23 856 878 856 878 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.8e-05	0.003	17.6	1.4	1	23	450	472	450	472	0.96
2	16	1.7e-05	0.0011	19.1	1.9	1	20	478	497	478	500	0.94
3	16	1.2e-05	0.00074	19.5	1.4	1	23	506	528	506	528	0.98
4	16	7e-05	0.0043	17.1	4.4	1	21	534	554	534	556	0.95
5	16	9.4e-06	0.00058	19.9	5.6	1	23	562	584	562	584	0.99
6	16	2.2e-05	0.0013	18.7	5.3	1	23	590	612	590	612	0.97
7	16	8.2e-05	0.005	16.9	6.9	1	23	618	640	618	640	0.96
8	16	2.9	1.8e+02	2.6	0.3	1	9	646	654	646	654	0.89
9	16	4.9e-07	3e-05	23.9	2.9	1	23	656	678	656	678	0.98
10	16	7.2e-06	0.00044	20.2	7.8	1	23	684	706	684	706	0.98
11	16	2.3e-05	0.0014	18.7	9.1	1	23	712	734	712	734	0.98
12	16	3e-05	0.0018	18.3	7.5	1	23	740	762	740	762	0.98
13	16	0.0014	0.088	13.0	8.8	1	21	768	788	768	790	0.94
14	16	1.1e-05	0.00067	19.7	0.4	1	23	796	818	796	818	0.98
15	16	0.026	1.6	9.0	4.5	1	23	828	850	828	850	0.98
16	16	4.2e-07	2.6e-05	24.1	1.3	1	23	856	878	856	878	0.97

Sequence Information

Coding Sequence: ATGAACAGCGAGCAGCATGCGTTGCCAGCGACTACGCAGGCTCAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTTCGACTGGCCTTGGCAATGTGGGGAATACCCCTCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTGACCAATCTGTTTCCCGGACCGCTACCTCAGGTCTCGGTCTACCACCATTCCCACCACAACTCCTCTCATAGGAGCAGTGGAAGTGGGGAGGCATCCTCCAAAGAGCCAGCCTCCTCTTTGAACCAGGAAATGGCATTGAACTCCAGTTCTCATCATCAGTCAACCTCTCAGTCGGCACATCATCACCATCAACCTTCAGTTAGCAGTAGCAACCATCATGGCTCTATGCAGTCCAACTCTCAGATTCCAGTTTCTCTTCCTGGCCTTAATCTAGACGGGGCGCATATCCCAGCGAGCGTTAGTCATTTACAGGCAGCACACGCGCAAATGCAACAACAAATGCAGGCTCAACAGCAGCAGCTGCaccagcagcaacaacagcagccacagcagcagcaacaacagcagcagcaatcTCATCACCAAATGCAGAATCATCAAAATGCACAGAACAATGGACCGACCTCACATAACCAGAACACTCAGCgggacgacaacaaagtcaaGGACGAAGGCAGCTGTACCACCGAACGCTGTAGCGATAATCAGGTTCACTGTCAAGTTCAATGCGATCTTCAGTTACAACCACCACAAGACTTACAACAGAGCTTAatgcaacagcagcagcaacaacagcagcagcagcagcagcagatCGGCGTGAATATAAGCGGGAATTCTTCGACCGAGGGTAGCAGCCAGAATAATTCGGAGAAAccagagaaggaaaaggagttGCGGCAACTTAATATGACGCAatttcaAGTTCCAGACTTAAAACCAGGTGGTCATATGATGGACGTCAGAACGGCGGATGGTTCGGTGGTCAAAATTAGTGCGGGAAATGAACAAGACTTAGCTAAAACACTGGGTGTTGAAATGGTACAAAACATGTACAAGGTCAATGTCGAAGATATTAACCAGCTTTTAGCGTATCACGAAGTTTTCGGAAAATTGCAAAGTGAAATTGCAGCTGGTACTACTTTGGTAGGAAGTACAGTACCTACTCAAACAGTTACCACCATTCAAAATGGTACACCGTTAGTGCAGCAAGTTCAGTTGAATAAGTTTGACATAAAAACTAGCGATGGTGAAGCAACACCGGGTCCAAGTGCATCGCCAGTTTCGGTTGGCAGCCATGCCTGTGAGATATGTGGAAAGATATTCCAGTTTCGTTACCAGCTTATAGTACATCGTAGATATCATACAGAAAGGAAACCATTCACGTGTCAGGTTTGTGGGAAGGCATTCTCAAACGCAAACGATCTAACGCGTCACGGAAAATGTCACTTGGGTGGATCGATGTTTACATGCACTGTATGTTTTCACGTCTTCGCAAATGCACCTTCGTTGGAGCGGCATATGAAACGACATGCTACCGACAAGCCTTACAACTGTACGGTGTGTGGCAAGAGTTTCGCAAGAAAAGAGCATTTAGATAATCACACCCGATGCCATACAGGCGAAACACCATACAGGTGCCAATATTGCTCGAAGACATTTACCCGAAAAGAACACATGGTAAATCACGTGCGCAAACACACTGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAACCATGTTATGTGGCATACAGGAGAAACCCCCCATCATTGTCAAGCCTGTGGCAAGAAGTATACGCGCAAAGAGCACCTCGCTAACCACATGCGTTCACACACCAATGACACCCCATTCCGCTGTGAGATATGCGGGGAGACGCCCTTCCGTTGTCAGTACTGTCCAAAAGCATTTACGCGGAAGGATCATCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAATCGCCACATCGATGCCACTTCTGCTCAAAATCATTTACTCGTAAGGAGCACTTGACGAATCATGTACGAATCCACACTGGCGAATCTCCGCACAGATGTGAATTTTGTCAGAGGACGTTCACTAGGAAAGAACACCTCAATAATCATCTCCGTCAACATACCGGAGATTCTTCGCATTGTTGTAACGTGTGTTCGAAACCATTTACGAGAAAGGAACATCTCGTAAATCATATGCGCTGTCATACCGGTGAACGTCCATTCGTGTGCACGGAGTGCGGCAAAAGCTTCCCGTTGAAGGGTAACTTGCTCTTCCACATGCGTTCGCATAACAAAGGAAGCAACGCCGAGAGACCATTCCGTTGCGATCTCTGCCCCAAAGACTTCATGTGTAAAGGACACTTGGTCTCTCACAGACGATCCCATTCGGACGAACGTCCACACAGCTGTCCAGATTGCGGCAAGACTTTcgttgaaaaaggaaacatgTTGAGACATTTGCGAAAACACGCTGCCGAAGGGCCACCGACGCAGGTTAGCACACCCTCTGCTATTCCACAATCTGGAGTTTTACCTATACCAACCGCAGCGGTTTTGGTTGGACATCCATTGGCACCACCAGCTCCACCAGTTGTCCCACAACATACCGTGGTAGTACCAACACCACCTGGAGTTCTAACATCTTATTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATSTGLGNVGNTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGSGEASSKEPASSLNQEMALNSSSHHQSTSQSAHHHHQPSVSSSNHHGSMQSNSQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQMQAQQQQLHQQQQQQPQQQQQQQQQSHHQMQNHQNAQNNGPTSHNQNTQRDDNKVKDEGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQQIGVNISGNSSTEGSSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPLVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPTAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00773969;
80% Identity: -