Tang006093.1
Basic Information
- Insect
- Tetragonisca angustula
- Gene Symbol
- -
- Assembly
- GCA_036937485.2
- Location
- JAWNGG010000047.1:725835-734750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.2e-05 0.005 17.7 1.4 1 23 445 467 445 467 0.96 2 16 0.0031 0.3 12.1 1.6 1 20 473 492 473 495 0.94 3 16 1.3e-05 0.0013 19.6 1.4 1 23 501 523 501 523 0.98 4 16 7.5e-05 0.0073 17.2 4.4 1 21 529 549 529 551 0.95 5 16 1e-05 0.00098 19.9 5.6 1 23 557 579 557 579 0.99 6 16 2.3e-05 0.0022 18.8 5.3 1 23 585 607 585 607 0.97 7 16 8.7e-05 0.0085 16.9 6.9 1 23 613 635 613 635 0.96 8 16 3.1 3e+02 2.6 0.3 1 9 641 649 641 649 0.89 9 16 5.2e-07 5.1e-05 23.9 2.9 1 23 651 673 651 673 0.98 10 16 7.7e-06 0.00075 20.2 7.8 1 23 679 701 679 701 0.98 11 16 2.4e-05 0.0024 18.7 9.1 1 23 707 729 707 729 0.98 12 16 3.2e-05 0.0031 18.3 7.5 1 23 735 757 735 757 0.98 13 16 0.0015 0.15 13.0 8.8 1 21 763 783 763 785 0.94 14 16 1.2e-05 0.0011 19.7 0.4 1 23 791 813 791 813 0.98 15 16 0.028 2.7 9.1 4.5 1 23 823 845 823 845 0.98 16 16 4.5e-07 4.4e-05 24.1 1.3 1 23 851 873 851 873 0.97
Sequence Information
- Coding Sequence
- ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAACCAAGAAATGGCGTTAACTTCCAGTTCACATCATCAATCAACACCTACACATCATCATCATCAATCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGcaGATACCAGTTTCTCTACCAGGCCTTAATTTAGACGGACCACATATACCTGCCAGCGTCAGTCATTTACAGGCAGCACATGCACAAATGCAGCAACAAATGCAGGCAGCACAACAGCAACAGCTGCATCAACAGCAGCAAccacagcagcagcagcagcagcagcaacaatcTCACCATCAAATGCAAAATCATCAAAATGCTCAGAATAGTGGACCAACTGCACATAATCAAAACGCACAGAGGGATGATAATAAGGTGAAGGATGAAGGTGGAAGTTGTACAACTGAACGTTGCAGTGACAATCAAGTTCACTGTCAAGTTCAATGTGACCTCCAGTTACAAACATCTCAGGATTTACAACAAAGTCTTatgcaacagcaacagcaacagcaacaacaaatTGGTGTGAACATAAGCGGGAATTCATCGAACGAAGGTGGAAGTCAAAATAATACAGAGAAacctgaaaaagaaaaagagttgCGTCAACTAAATATGACGCAGTTTCAAGTGCCAGATTTAAAACCAGGAGGTCACATGATGGATGTTAGAACAGCTGATGGTTCAGTTGTGAAAATCAGTGCTGGAAATGAGCAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTACAAgGTAAATGTCGAGGATATTAATCAACTTTTAGCATATCATGAAGTATTTGGAAAACTACAAAGTGAAATAGCAGCTGGTACAACTTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACCATACAAAATGGAACTCCAATTGTACAACaagttcaattaaataaatttgatattaaatcaAGTGATGGTGAAGCTACACCAGGACCAAGTGCTTCGCCTGTATCAGTTGGAAGTCATGCATGTGAAATatgtggaaaaatatttcagtttcgcTATCAGCTTATTGTTCATCGAAGATACCATACAGAAAGGAAACCTTTTACTTGTcagGTGTGTGGCAAGGCctttttaaatgcaaatgaTTTGACACGGCATGGAAAATGTCATTTAGGTGGATCCATGTTTACTTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCATCTTTGGAACGTCACATGAAGCGACATGCTACCGATAAGCCATATAATTGTACTGTATGTGGAAAAAGTTTTGCAAGAAAAGAACATTTAGATAACCATACGCGTTGTCATACTGGAGAAACACCTTACAGgtGTCAATATTGTTCAAAGACTTTTACTAGGAAAGAACATATGGTAAATCATGTTCGTAAACATACGGGTGAAACACCTCATCGATgtgatatttgtaaaaagagcTTTACTCGCAAAGAACATTTTATGAATCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGCCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAACCATATGCGTTCACATACCAATGATACACCATTTCGCTGTGAAATATGCGGAGAGACGCCTTTTCGCTGTCAATACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACCGGCGAATCACCGCATAGGTGTGAATTCTGCCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAGCACACCGGAGATTCATCGCACTGTTGTAACGTGTGCTCGAAACCATTTACAAGAAAGgAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTTGTATGCACAGAATGTGGCAAAAGCTTTCCTTTGAAAGGTAACTTGCTTTTCCACATGCGCTCGCACAATAAAGGTAGCAATGCCGAGAGACCGTTTCGCTGCGATCTTTGTCCAAAAGACTTCATGTGCAAAGGACACTTAGTATCTCACAGACGATCGCATTCGGACGAGCGACCACATAGCTGTCCAGATTGTGGGAAAACATTCGTTGAGAAAGGAAATATGTTGAGACATTTGAGAAAACACGCGGCGGAAGGCCCGCCGACACAAGTCAGCACGCCGTCAGCAATTCCTCAATCCGGTGTTCTGCCGATTCCGGCGGCGGCTGTCCTTGTTGGCCATCCTTTGGCGCCCCCTGCGCCACCTGTAGTCCCACAACACACCGTTGTTGTGCCTACTCCCCCCGGTGTATTGACCTCCTACTAA
- Protein Sequence
- MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQSSVSSSSHHSSLQPNSQQIPVSLPGLNLDGPHIPASVSHLQAAHAQMQQQMQAAQQQQLHQQQQPQQQQQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQIGVNISGNSSNEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01066407;
- 90% Identity
- iTF_00773969;
- 80% Identity
- -