Basic Information

Insect: Bombus opulentus
Gene Symbol: -
Assembly: GCA_034509555.1
Location: CM067418.1:5413276-5423831[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.1e-05 0.004 17.7 1.4 1 23 447 469 447 469 0.96

2 16 0.0031 0.24 12.1 1.6 1 20 475 494 475 497 0.94

3 16 1.3e-05 0.001 19.6 1.4 1 23 503 525 503 525 0.98

4 16 7.4e-05 0.0058 17.1 4.4 1 21 531 551 531 553 0.95

5 16 1e-05 0.00079 19.9 5.6 1 23 559 581 559 581 0.99

6 16 2.3e-05 0.0018 18.8 5.3 1 23 587 609 587 609 0.97

7 16 8.7e-05 0.0068 16.9 6.9 1 23 615 637 615 637 0.96

8 16 3.1 2.4e+02 2.6 0.3 1 9 643 651 643 651 0.89

9 16 5.2e-07 4.1e-05 23.9 2.9 1 23 653 675 653 675 0.98

10 16 7.7e-06 0.0006 20.2 7.8 1 23 681 703 681 703 0.98

11 16 2.4e-05 0.0019 18.7 9.1 1 23 709 731 709 731 0.98

12 16 3.2e-05 0.0025 18.3 7.5 1 23 737 759 737 759 0.98

13 16 0.0015 0.12 13.0 8.8 1 21 765 785 765 787 0.94

14 16 1.2e-05 0.00092 19.7 0.4 1 23 793 815 793 815 0.98

15 16 0.019 1.5 9.6 4.3 1 23 825 847 825 847 0.99

16 16 4.5e-07 3.5e-05 24.1 1.3 1 23 853 875 853 875 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.1e-05	0.004	17.7	1.4	1	23	447	469	447	469	0.96
2	16	0.0031	0.24	12.1	1.6	1	20	475	494	475	497	0.94
3	16	1.3e-05	0.001	19.6	1.4	1	23	503	525	503	525	0.98
4	16	7.4e-05	0.0058	17.1	4.4	1	21	531	551	531	553	0.95
5	16	1e-05	0.00079	19.9	5.6	1	23	559	581	559	581	0.99
6	16	2.3e-05	0.0018	18.8	5.3	1	23	587	609	587	609	0.97
7	16	8.7e-05	0.0068	16.9	6.9	1	23	615	637	615	637	0.96
8	16	3.1	2.4e+02	2.6	0.3	1	9	643	651	643	651	0.89
9	16	5.2e-07	4.1e-05	23.9	2.9	1	23	653	675	653	675	0.98
10	16	7.7e-06	0.0006	20.2	7.8	1	23	681	703	681	703	0.98
11	16	2.4e-05	0.0019	18.7	9.1	1	23	709	731	709	731	0.98
12	16	3.2e-05	0.0025	18.3	7.5	1	23	737	759	737	759	0.98
13	16	0.0015	0.12	13.0	8.8	1	21	765	785	765	787	0.94
14	16	1.2e-05	0.00092	19.7	0.4	1	23	793	815	793	815	0.98
15	16	0.019	1.5	9.6	4.3	1	23	825	847	825	847	0.99
16	16	4.5e-07	3.5e-05	24.1	1.3	1	23	853	875	853	875	0.97

Sequence Information

Coding Sequence: ATGAACAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAACAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTCTTTCCTGGACCGCTACCTCAGGTCTCAGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACTTCCAGTTCGCATCATCAGTCAACACCTACACACCATCATCATCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATTCACAGcaGATACCAGTTTCTCTACCAGGCCTTAATTTAGACGGGGCACATATACCTGCCAGCGTCAGTCATTTACAAGCAGCACATGCACAAATGCAACAAATGCAGGCagcacaacaacaacagctgcatcagcagcaacagcagcagccccaacaacaacagcagcaacaacaacaacaatctCACCATCAGATGCAAAATCATCAAAACGCTCAGAACAGTGGACCAACTGCACATAATCAAAACGCACAGAGAGATGATAACAAGGTGAAAGATGAAAGTGGAAGTTGCACAACTGAACGTTGCAGTGACAATCAAGTTCACTGTCAAGTTCAATGTGACCTCCAATTACAAACATCTCAAGATTTACAACAAAGTCTTatgcagcagcagcagcaacagcagcaacaaatTGGTGTAAACATAAGCGGAAATTCTTCGAGTGAAGGCGGAAGtcaaaataatacagaaaagcctgaaaaagagaaagaattgCGTCAACTAAATATGACGCAatTCCAAGTGCCAGATTTAAAACCAGGAGGTCATATGATGGATGTAAGAACAGCTGATGGATCAGTCGTGAAAATTAGCGCTGGGAATGAGCAAGATTTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTACAAGGTAAATGTTGAGGACATTAATCAGCTTTTAGCATATCATGAAGTATTTGGAAAACTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAAAATGGAACTCCAATTGTACAACAAGTTCAATTAAATAAGTTTGATATTAAATCAAGCGATGGCGAAGCTACACCAGGACCAAGCGCTTCGCCTGTATCAGTTGGGAGTCATGCGTGTGAAATATGTGGAAAAATTTTCCAGTTTCGTTATCAGCTTATCGTTCATCGTAGATATCATACGGAAAGGAAACCTTTTACTTGTCAGGTGTGTGGCAAGGCCTTCTTAAATGCAAATGATTTGACACGGCATGGGAAATGTCACCTAGGTGGATCCATGTTTACTTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCCTCTTTGGAACGTCATATGAAGCGACACGCTACCGATAAACCATATAATTGTACCGTATGTGGAAAAAGTTTTGCAAGAAAAGAACATTTGGATAATCATACGCGTTGTCATACTGGGGAAACACCTTACAGgtGCCAGTACTGTTCAAAGACGTTTACTAGGAAGGAACATATGGTAAATCATGTTCGCAAACATACGGGTGAAACACCTCATCGATgtgatatttgtaaaaagagCTTTACCCGCAAAGAACATTTTATGAACCATGTTATGTGGCACACGGGAGAAACTCCTCATCATTGTCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAATCATATGCGTTCACATACCAATGATACACCGTTTCGCTGTGAAATATGCGGAGAGACGCCCTTCCGCTGTCAGTACTGTCCGAAAGCATTTACGCGGAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCATACTGGTGAATCACCTCATAGGTGTGAATTTTGTCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAGCATACCGGAGATTCATCGCACTGCTGCAACGTGTGCTCGAAACCATTTACAAGAAAGGAACATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTTGTATGCACAGAATGTGGCAAAAGCTTCCCTTTAAAGGGTAATCTACTTTTCCACATGCGTTCGCACAATAAAGGCAGTAACGCCGAGAGACCATACCGTTGCGATCTTTGTCCAAAAGACTTTATGTGCAAAGGACATTTAGTGTCTCATAGACGATCACATTCGGACGAGCGACCACATAGCTGTCCAGATTGTGGGAAAACCTTCGTTGAAAAGGGCAATATGCTGCGACACTTGAGAAAACACGCAGCGGAAGGTCCGCCAACACAAGTCAGCACGCCCTCTGCAATTCCTCAATCCGGTGTTCTGCCCATTCCGGCAGCAGCAGTTCTGGTCGGCCATCCTTTGGCACCCCCTGCACCACCCGTAGTTCCACAACACACCGTAGTTGTGCCTACTCCTCCGGGTGTACTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATTTSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNSQQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQMQAAQQQQLHQQQQQQPQQQQQQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDESGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQSLMQQQQQQQQQIGVNISGNSSSEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPYRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00773969;
80% Identity: iTF_00223335;