Basic Information

Insect: Nomada lathburiana
Gene Symbol: -
Assembly: GCA_963667235.1
Location: OY763906.1:5747098-5754768[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.9e-05 0.0037 17.6 1.4 1 23 454 476 454 476 0.96

2 16 0.0029 0.22 12.0 1.6 1 20 482 501 482 504 0.94

3 16 1.2e-05 0.00093 19.5 1.4 1 23 510 532 510 532 0.98

4 16 7e-05 0.0054 17.1 4.4 1 21 538 558 538 560 0.95

5 16 9.5e-06 0.00073 19.9 5.6 1 23 566 588 566 588 0.99

6 16 2.2e-05 0.0017 18.7 5.3 1 23 594 616 594 616 0.97

7 16 8.2e-05 0.0063 16.9 6.9 1 23 622 644 622 644 0.96

8 16 2.9 2.2e+02 2.6 0.3 1 9 650 658 650 658 0.89

9 16 4.9e-07 3.8e-05 23.9 2.9 1 23 660 682 660 682 0.98

10 16 7.3e-06 0.00056 20.2 7.8 1 23 688 710 688 710 0.98

11 16 2.3e-05 0.0018 18.7 9.1 1 23 716 738 716 738 0.98

12 16 3e-05 0.0023 18.3 7.5 1 23 744 766 744 766 0.98

13 16 0.0014 0.11 13.0 8.8 1 21 772 792 772 794 0.94

14 16 1.1e-05 0.00085 19.7 0.4 1 23 800 822 800 822 0.98

15 16 0.026 2 9.0 4.5 1 23 832 854 832 854 0.98

16 16 4.3e-07 3.3e-05 24.1 1.3 1 23 860 882 860 882 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.9e-05	0.0037	17.6	1.4	1	23	454	476	454	476	0.96
2	16	0.0029	0.22	12.0	1.6	1	20	482	501	482	504	0.94
3	16	1.2e-05	0.00093	19.5	1.4	1	23	510	532	510	532	0.98
4	16	7e-05	0.0054	17.1	4.4	1	21	538	558	538	560	0.95
5	16	9.5e-06	0.00073	19.9	5.6	1	23	566	588	566	588	0.99
6	16	2.2e-05	0.0017	18.7	5.3	1	23	594	616	594	616	0.97
7	16	8.2e-05	0.0063	16.9	6.9	1	23	622	644	622	644	0.96
8	16	2.9	2.2e+02	2.6	0.3	1	9	650	658	650	658	0.89
9	16	4.9e-07	3.8e-05	23.9	2.9	1	23	660	682	660	682	0.98
10	16	7.3e-06	0.00056	20.2	7.8	1	23	688	710	688	710	0.98
11	16	2.3e-05	0.0018	18.7	9.1	1	23	716	738	716	738	0.98
12	16	3e-05	0.0023	18.3	7.5	1	23	744	766	744	766	0.98
13	16	0.0014	0.11	13.0	8.8	1	21	772	792	772	794	0.94
14	16	1.1e-05	0.00085	19.7	0.4	1	23	800	822	800	822	0.98
15	16	0.026	2	9.0	4.5	1	23	832	854	832	854	0.98
16	16	4.3e-07	3.3e-05	24.1	1.3	1	23	860	882	860	882	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACGAATCTGTTTCCTGGACCGCTACCTCAGGTCTCAGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAACCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACTTCCAGTTCGCACCATCAGTCAACACCTACACACCATCATCATCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATCCACAGcaGATACCAGTTTCTCTGCCAGGCCTTAATTTAGACGGAGCACACATACCTGCCAGTGTGAGTCATTTGCAGGCAGCACATGCACAAATGCAGCAACAAATGCAGGCAGCACAACAACAACAGTTGCatcaacagcagcaacagcaacagcagcaacctcaacaacagcaacaatcTCACCATCAAATGCAAAATCATCAGAATGCTCAGAACAGTGGACCAACTGCACATAATCAAAACGCACAGAGAGATGATAATAAGGTGAAAGACGAAGGTGGAAGTTGCACAACTGAACGTTGTAGCGACAATCAAGTTCACTGTCAAGTTCAATGCGACCTGCAACTACAAACAACTCAAGAGTTGCAACAAAGTCTCatgcagcagcagcaacaacaacagcaacagcagcaacaacaacagcaacaacaaattGGCGTAAATATAAGTGGAAATTCATCGACCGAAGGTGGAAATCAAAACAATGCTGAAAAGcctgaaaaggaaaaagagctGCGTCAACTAAACATGGCGCAATTCCAAGTACCCGATTTAAAGCCAGGAGGTCATATGATGGATGTTAGAACGGCTGATGGTTCTGTTGTGAAAATCAGTGCTGGAAACGAGCAAGATTTAGCGAAGACCCTAGGTGTTGAAATGGtgcaaaatatgtataagGTTAATGTCGAGGATATTAATCAGCTTTTAGCATATCACGAAGTATTTGGAAAATTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGGAGTACAGTTCCTACTCAAACAGTTACCACAATACAAAATGGAACTCCAATTGTGCAACAAGTACAGTTAAATAAGTTCGATATTAAATCGAGCGATGGTGAAGCAACACCGGGACCAAGTGCTTCGCCTGTGTCAGTTGGAAGTCATGCATGTGAAATATGTGGAAAAATTTTTCAGTTTCGTTATCAACTTATCGTACATCGTCGATATCACACGGAGAGAAAACCTTTTACTTGCCAGGTGTGTGGCAAAGCCTTCTTGAATGCGAATGATTTGACCCGACATGGGAAGTGTCATCTAGGTGGATCAATGTTTACCTGTACAGTTTGTTTTCATGTGTTTGCAAATGCACCGTCTTTAGAACGTCACATGAAGCGACATGCTACCGATAAACCATACAATTGTACCGTTTGTGGAAAAAGCTTTGCAAGGAAGGAACATTTGGATAATCATACGCGTTGCCATACTGGAGAAACACCTTATAGgTGCCAGTATTGTTCGAAGACGTTTACTAGAAAAGAACATATGGTAAACCATGTTCGCAAACACACGGGCGAAACACCGCATCGGTGCGATATTTGTAAAAAGAGCTTTACCCGCAAAGAACATTTTATGAACCATGTTATGTGGCACACGGGAGAAACTCCACATCATTGCCAGGCCTGTGGAAAAAAGTATACACGTAAAGAACATCTCGCAAATCATATGCGTTCACATACCAATGATACACCGTTTCGCTGTGAAATATGCGGTGAGACCCCATTCCGCTGTCAGTACTGTCCAAAAGCATTTACGCGGAAAGATCATCTGGTGAACCATGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTACGAATCCACACCGGTGAATCACCTCACAGGTGTGAATTCTGCCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCATCGCACTGTTGCAACGTTTGCTCGAAACCGTTTACAAGAAAGgagCATCTTGTAAACCATATGCGATGTCATACTGGTGAACGTCCGTTCGTATGCACAGAATGTGGCAAGAGTTTCCCATTGAAGGGCAATCTACTTTTCCACATGCGTTCGCACAATAAAGGCAGTAACGCTGAGAGACCGTTCCGTTGTGACCTTTGCCCAAAAGATTTCATGTGCAAGGGACACTTGGTGTCTCACAGACGATCTCATTCGGATGAACGACCGCACAGCTGTCCAGATTGCGGCAAAACATTTGTCGAGAAGGGCAATATGTTGAGACATTTGAGAAAACACGCGGCTGAAGGGCCTCCTACGCAAGTCAGCACACCGTCAGCCATTCCTCAATCTGGTGTTCTGCCGATACCAGCGGCTGCAGTCCTAGTAGGCCATCCCCTGGCACCGCCTGCGCCGCCCGTAGTGCCGCAACACACAGTTGTTGTGCCTACTCCTCCGGGTGTATTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNPQQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQMQAAQQQQLHQQQQQQQQQPQQQQQSHHQMQNHQNAQNSGPTAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTTQELQQSLMQQQQQQQQQQQQQQQQQIGVNISGNSSTEGGNQNNAEKPEKEKELRQLNMAQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00773969;
80% Identity: -