Basic Information

Insect: Xylocopa violacea
Gene Symbol: -
Assembly: GCA_963969225.1
Location: CAXAJV010000002.1:43184869-43193571[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.1e-05 0.0042 17.6 1.4 1 23 451 473 451 473 0.96

2 16 0.0031 0.25 12.1 1.6 1 20 479 498 479 501 0.94

3 16 1.3e-05 0.001 19.5 1.4 1 23 507 529 507 529 0.98

4 16 7.4e-05 0.006 17.1 4.4 1 21 535 555 535 557 0.95

5 16 1e-05 0.00081 19.9 5.6 1 23 563 585 563 585 0.99

6 16 2.3e-05 0.0019 18.7 5.3 1 23 591 613 591 613 0.97

7 16 8.6e-05 0.007 16.9 6.9 1 23 619 641 619 641 0.96

8 16 3.1 2.5e+02 2.6 0.3 1 9 647 655 647 655 0.89

9 16 5.2e-07 4.2e-05 23.9 2.9 1 23 657 679 657 679 0.98

10 16 7.7e-06 0.00062 20.2 7.8 1 23 685 707 685 707 0.98

11 16 2.4e-05 0.002 18.7 9.1 1 23 713 735 713 735 0.98

12 16 3.2e-05 0.0026 18.3 7.5 1 23 741 763 741 763 0.98

13 16 0.0015 0.12 13.0 8.8 1 21 769 789 769 791 0.94

14 16 1.2e-05 0.00094 19.7 0.4 1 23 797 819 797 819 0.98

15 16 0.028 2.2 9.0 4.5 1 23 829 851 829 851 0.98

16 16 4.5e-07 3.6e-05 24.1 1.3 1 23 857 879 857 879 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.1e-05	0.0042	17.6	1.4	1	23	451	473	451	473	0.96
2	16	0.0031	0.25	12.1	1.6	1	20	479	498	479	501	0.94
3	16	1.3e-05	0.001	19.5	1.4	1	23	507	529	507	529	0.98
4	16	7.4e-05	0.006	17.1	4.4	1	21	535	555	535	557	0.95
5	16	1e-05	0.00081	19.9	5.6	1	23	563	585	563	585	0.99
6	16	2.3e-05	0.0019	18.7	5.3	1	23	591	613	591	613	0.97
7	16	8.6e-05	0.007	16.9	6.9	1	23	619	641	619	641	0.96
8	16	3.1	2.5e+02	2.6	0.3	1	9	647	655	647	655	0.89
9	16	5.2e-07	4.2e-05	23.9	2.9	1	23	657	679	657	679	0.98
10	16	7.7e-06	0.00062	20.2	7.8	1	23	685	707	685	707	0.98
11	16	2.4e-05	0.002	18.7	9.1	1	23	713	735	713	735	0.98
12	16	3.2e-05	0.0026	18.3	7.5	1	23	741	763	741	763	0.98
13	16	0.0015	0.12	13.0	8.8	1	21	769	789	769	791	0.94
14	16	1.2e-05	0.00094	19.7	0.4	1	23	797	819	797	819	0.98
15	16	0.028	2.2	9.0	4.5	1	23	829	851	829	851	0.98
16	16	4.5e-07	3.6e-05	24.1	1.3	1	23	857	879	857	879	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGGAGTACCCCACATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACGAATCTGTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAGCCAGCCTCTTCTTTGAACCAAGAAATGGCGTTGACTTCCAGTTCGCACCATCAGTCAACACCTACACACCACCATCATCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTGCAACCAAATCCACAGCAGATTCCAGTTTCTCTGCCAGGCCTTAACTTAGACGGAACGCATATACCTGCCAGCGTCGGTCATTTACAGGCAGCGCATGCACAAATGCAGCAACAAATGCAGGCAGCTCAGCAGCAACAGCTGCATCAACAACAACAgccgcaacaacaacaacagcagcagcaacagcaacagcagcaacaaTCTCACCATCAAATGCAAAATCATCAAAATGCTCAGAATAGTGGACCAACTGCACATAATCAAAGCGCACAGAGGGATGATAACAAGGTGAAAGACGAAGGTGGAAGTTGCACAACTGAACGTTGTAGCGACAATCAAGTTCATTGCCAGGTTCAATGTGACCTCCAATTACAAACATCTCAAGAATTACAACAAAGTCTtatgcagcagcagcaacagcaacaacagcaacaaATTGGTGTGAACATAAGTGGAAATTCTTCGACCGAAGGTGGAAGTCAAAACAATACAGAAAAgccagaaaaagaaaaagaactaCGTCAACTAAACATGACGCAATTTCAAGTGCCAGACTTAAAACCGGGAGGTCATATGATGGACGTAAGAACAGCTGATGGTTCGGTTGTGAAAATCAGTGCCGGAAATGAACAAGATTTAGCGAAAACCCTTGGTGTTGAAATGGTGCAAAGTATGTATAAGGTGAATGTTGAGGACATTAATCAGCTTTTAGCATATCACGAAGTATTTGGAAAGTTACAAAGTGAAATAGCAGCTGGTACAACTTTAGTTGGAAGCACAGTTCCTACTCAAACGGTTACCACTATACAAAATGGAACACCAATTGTGCAACAAGTTCAGTTGAATAAGTTCGATATTAAATCAAGCGATGGTGAAGCTACACCAGGACCAAGCGCGTCGCCCGTATCAGTTGGAAGTCATGCGTGCGAAATATGTGGAAAAATTTTTCAATTTCGCTATCAGCTTATTGTGCATCGTCGATATCATACGGAACGAAAACCTTTTACTTGTCAGGTGTGTGGGAAGGCCTTTTTAAATGCAAACGATTTAACACGGCATGGAAAGTGTCATTTGGGCGGATCTATGTTTACGTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCATCTTTAGAACGTCACATGAAACGACACGCTACCGATAAGCCGTACAACTGTACTGTATGCGGAAAAAGTTTTGCACGGAAAGAACATTTAGATAATCATACTCGTTGTCATACCGGAGAAACACCTTACAGATGCCAGTATTGTTCAAAGACGTTTACTAGAAAGGAACATATGGTAAATCACGTTCGTAAACACACGGGTGAAACACCGCACCGATGCGATATTTGTAAAAAGAGCTTTACCCGCAAAGAACATTTTATGAATCATGTTATGTGGCACACAGGCGAAACTCCCCACCATTGTCAAGCCTGTGGCAAAAAATATACACGTAAAGAGCATCTTGCAAACCATATGCGTTCACATACCAATGATACACCATTTCGCTGTGAAATATGCGGAGAGACGCCCTTCCGCTGTCAGTACTGTCCGAAAGCATTTACGCGAAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACATCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACCGGCGAATCACCGCACAGGTGTGAATTCTGCCAGAGAACGTTCACCAGGAAAGAACATTTAAATAATCATCTCCGTCAACATACCGGAGATTCATCGCACTGTTGCAACGTATGCTCGAAACCGTTTACTAGAAAGGAGCATCTCGTAAATCACATGCGATGTCATACTGGTGAACGTCCTTTCGTATGCACCGAATGTGGCAAAAGCTTCCCGTTGAAGGGCAACTTACTTTTCCACATGCGTTCGCACAACAAAGGTAGCAACGCCGAAAGACCGTTCCGCTGCGATCTTTGCCCGAAAGACTTCATGTGCAAGGGCCATTTGGTCTCTCACAGACGGTCGCATTCGGACGAGCGACCGCACAGTTGTCCGGATTGCGGAAAAACATTCGTCGAAAAAGGCAACATGCTCAGACATTTGAGAAAACACGCGGCGGAAGGACCGCCGACGCAAGTCAGCACACCGTCAGCGATCCCTCAATCCGGCGTTTTGCCGATTCCGGCAGCAGCGGTTCTGGTCGGCCATCCCCTAGCACCACCCGCACCACCTGTAGTACCGCAACACACCGTTGTCGTACCTACTCCTCCAGGCGTATTGACCTCCTACTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNPQQIPVSLPGLNLDGTHIPASVGHLQAAHAQMQQQMQAAQQQQLHQQQQPQQQQQQQQQQQQQQSHHQMQNHQNAQNSGPTAHNQSAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQELQQSLMQQQQQQQQQQIGVNISGNSSTEGGSQNNTEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQSMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01066407;
90% Identity: iTF_00773969;
80% Identity: -