Aplu110131.2
Basic Information
- Insect
- Anthophora plumipes
- Gene Symbol
- -
- Assembly
- GCA_951804975.1
- Location
- OX638122.1:5063917-5084779[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.9e-05 0.014 18.4 1.8 1 23 442 464 442 464 0.98 2 16 0.0029 1.5 12.1 1.6 1 20 470 489 470 492 0.94 3 16 1.2e-05 0.0062 19.6 1.4 1 23 498 520 498 520 0.98 4 16 7.1e-05 0.036 17.2 4.4 1 21 526 546 526 548 0.95 5 16 9.6e-06 0.0048 19.9 5.6 1 23 554 576 554 576 0.99 6 16 2.2e-05 0.011 18.8 5.3 1 23 582 604 582 604 0.97 7 16 8.3e-05 0.042 16.9 6.9 1 23 610 632 610 632 0.96 8 16 2.9 1.5e+03 2.6 0.3 1 9 638 646 638 646 0.89 9 16 4.9e-07 0.00025 23.9 2.9 1 23 648 670 648 670 0.98 10 16 7.4e-06 0.0037 20.3 7.8 1 23 676 698 676 698 0.98 11 16 2.3e-05 0.012 18.7 9.1 1 23 704 726 704 726 0.98 12 16 3e-05 0.015 18.3 7.5 1 23 732 754 732 754 0.98 13 16 0.0015 0.74 13.0 8.8 1 21 760 780 760 782 0.94 14 16 1.1e-05 0.0056 19.7 0.4 1 23 788 810 788 810 0.98 15 16 0.027 13 9.1 4.5 1 23 820 842 820 842 0.98 16 16 4.3e-07 0.00022 24.1 1.3 1 23 848 870 848 870 0.97
Sequence Information
- Coding Sequence
- ATGAATAGTGAGCAACATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGAAGTACCCCGCATTCATCCACGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACCAATCTGTTTCCTGGACCGCTACCTCAGGTTTCGGTCTATCATCATTCCCACCATAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAACCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACTTCCAGTTCGCACCATCAGTCAACACCTACACACCATCATCACCAACCTTCAGTTAGCAGTACCAGTCACCATAGTTCTTTACAACCAAATCCACAGcaGATACCAGTTTCTCTACCAGGCCTTAATTTAGACGGAGCACATATTCCTGCCAGCGTCAGTCATTTACAGGCAGCACATGCACAAATGCAGCAGCAAATGCAGGcagcacaacaacagcagctgcaccagcagcaacaacaaccccAACAACAACAATCTCACCatcaaatgcagaatcatcaaaatgctCAGAATAGTGGACAAAGTGCACATAATCAAAATGCACAGAGAGATGATAATAAGGTGAAAGATGAAGGTGGAAGTTGCACAACTGAGCGTTGTAGTGATAATCAAGTTCACTGTCAAGTTCAGTGTGATCTCCAATTACAAACATCTCAAGATTTGCAACAAAACGTtatgcagcagcaacaacagcagcagcagcaacaaattGGTGTGAACATTAGTGGAAATTCTTCAACAGAAGGTGGAAGTCAAAATAGTACAGAAAAGcctgaaaaggaaaaagaccTGCGCCAATTAAATATGACTCAATTCCAAGTACCAGATTTGAAACCAGGAGGTCATATGATGGATGTAAGAACAGCTGATGGTTCAGTTGTAAAAATCAGTGCTGGAAATGAGCAAGATCTAGCAAAAACACTTGGTGTTGAAATGGTGCAAAATATGTATAAGGTTAATGTTGAGGATATTAATCAGCTTCTAGCATATCATGAAGTATTTGGAAAATTGCAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACTATACAAAATGGAACTCCAATTGTGCAACAAGTTCAGTTAAATAAGTTTGATATTAAATCAAGTGATGGTGAAGCAACTCCAGGACCAAGTGCTTCGCCTGTGTCAGTAGGAAGCTACACCTGTGAAATAtgtggaaaaatatttcaatttcgctATCAATTTATTGTACATCGTCGATATCATACAGAAAAAAAACCTTTTACTTGTCAGgtGTGTGGCAAGGCCTTTTTAAATGCAAATGACTTGACAAGACATGGAAAATGTCACTTAGGTGGATCTATGTTTACTTGTACAGTATGTTTTCATGTGTTTGCAAATGCACCATCTTTGGAACGTCACATGAAGCGACATGCTACTGATAAACCGTATAATTGTACTGTATGTGGGAAGAGCTTTGCAAGAAAGGAACATTTAGATAATCATACTCGTTGTCATACTGGGGAAACACCCTATAGatgTCAATATTGTTCAAAGACGTTTACAAGGAAAGAACATATGGTAAATCATGTTCGTAAACATACAGGCGAAACACCACATCGGTGTGATATTTGTAAAAAGAGTTTTACCCGTAAAGAACACTTCATGAATCACGTTATGTGGCACACAGGAGAAACTCCTCACCATTGTCAAGCTTGTGGCAAGAAATATACACGTAAAGAACATCTCGCAAACCATATGCGTTCTCATACCAATGATACACCATTTCGCTGTGAAATATGCGGAGAGACGCCCTTCCGCTGTCAGTACTGTCCAAAAGCATTTACACGGAAGGATCATCTGGTGAACCATGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACATCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCATACCGGCGAATCACCGCATAGGTGTGAATTCTGTCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGACTCATCGCACTGTTGCAACGTGTGCTCGAAACCATTTACAAGAAAGGAGCATCTCGTAAATCATATGCGATGTCATACTGGTGAACGTCCATTCGTATGCACAGAATGTGGTAAAAGCTTCCCATTGAAGGGCAATCTACTTTTCCATATGCGTTCGCACAATAAAGGTAGCAACGCTGAGAGACCGTTTCGTTGCGATCTTTGCCCGAAAGACTTCATGTGCAAAGGACATTTAGTATCTCACAGAAGATCGCACTCGGACGAACGACCGCACAGTTGTCCTGATTGCGGGAAAACGTTTGTCGAAAAGGGTAACATGCTAAGACACTTGAGAAAGCACGCGGCAGAAGGGCCACCGACGCAAGTCAGTACCCCATCAGCCATTCCTCAATCCAGCGTTTTACCGATTCCGGCGGCAGCAGTCCTAGTTGGACACCCCCTCGCACCGCCCGCTCCACCTGTAGTGCCGCAACACACCGTTGTTGTACCTACTCCTCCGGGTGTATTGACCTCCTACTAA
- Protein Sequence
- MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSTDLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSTSHHSSLQPNPQQIPVSLPGLNLDGAHIPASVSHLQAAHAQMQQQMQAAQQQQLHQQQQQPQQQQSHHQMQNHQNAQNSGQSAHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQTSQDLQQNVMQQQQQQQQQQIGVNISGNSSTEGGSQNSTEKPEKEKDLRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSYTCEICGKIFQFRYQFIVHRRYHTEKKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSSVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01066407;
- 90% Identity
- iTF_00773969;
- 80% Identity
- -