Ealt020773.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epirrhoe alternata
Gene Symbol
RREB1
Assembly
GCA_963565295.1
Location
OY751399.1:4253846-4270427[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 3.8 2.5e+02 3.0 6.4 1 23 92 115 92 115 0.93
2 11 0.025 1.6 9.9 0.1 1 23 292 314 292 314 0.97
3 11 0.0013 0.089 13.9 0.4 1 23 323 345 323 345 0.99
4 11 0.00082 0.055 14.5 2.0 1 23 351 374 351 374 0.97
5 11 0.0033 0.22 12.6 1.6 1 23 727 750 727 750 0.96
6 11 0.00027 0.018 16.0 1.3 2 23 938 959 937 959 0.97
7 11 0.028 1.9 9.7 5.3 1 23 965 988 965 988 0.97
8 11 0.08 5.4 8.3 1.1 1 23 1021 1045 1021 1045 0.93
9 11 1.1 74 4.7 1.2 1 23 1069 1092 1069 1092 0.91
10 11 0.002 0.14 13.3 0.2 2 23 1132 1153 1131 1153 0.96
11 11 0.031 2.1 9.5 5.3 1 23 1159 1181 1159 1181 0.97

Sequence Information

Coding Sequence
ATGCAGGGCGCCGCTGGTGTCTCCGCGGCCCCCACAGCTGACCCACCGCCATCTCAACAAATCAAAACAGAGGAGGTCTGCGAGGCTAAAATCGAGGCCGAAGAAATGGAAAGGATGATTATCGAACGCCAGGAAATGAGGGGCACTCGGACGACGAGCATCGACAGCGACAACCGCTCCGACAGGAGCGAGGAGGATGACTGCCGGCGAGCCAGGAAGCGGGCAGCGTCCACCTCTTCTTCGCCTATCCCGATGGACAAAAGAATCGCGCGGTTCGAATGCCACAAATGCCACCACAGATTCGACTCAGTCAACGCGTACGACATGCATCGCTTCACCGTCCACGGTGACGACTCTCGCTCAGGCTACGACGACCTCGTCGATTTCTCCACCAAAAAGTTCCCCGAAATCACCCGCGGCCTTCACAACTTGAGATGCGATCTCTGCATGAGAGATTTCGTCAACGCGCAAGTGCTAGACCTTCACAGGAAGACGTGCTCCCCATCGAACAGAATACCCACGCCTGACCGCGATCGCAGAGAAGATTTCTTCGCGAAACTGGACCTTAGGAACCGGTCGTTCGGTATTCCGGGCACGCTGACTCCCCCTATGGAAAGGTTCACGCCAAAGTTCGACGATGGACATATCAGTAATGGTATACGGCATATCGATGCCGCCCGAGACTTGGCAGATATTCAATCGATACTCAACGTCACGTCAACGGGAAGCCTTTTAGAGAGACTCACTGGCAACAGAGTTAATTTAGAAAGTTCCGTGCTGACGCCACCGGACACTGTTGCGAAAGATCGTGACCAGGAAGAGACGCAGGATAACTTCGCCGCTGAATTTAGGCGAATGAAACTGCGAGGTGAATTCCCTTGCAGACTATGCCCGGCTAAATTCCCGAACCTACGTGCGCTGAAGGGGCATAACAGAGTGCATCTTAGTGGTACTGGCCCTGGTCCTTATCAATGCAACATGTGCCCTCATGCGTCTTTGGATAAGGCGGCTCTGGTCAGGCATATGAGGACTCACAACGGCGACCGACCGTACGAATGCGCTGTTTGCAACTACGCTTTTACTACCAAAGCCAATTGTGAGCGTCACTTGAGGAACAGACACGCCAAAGTCACCCGAGAAGATGTTAAGCGTTCGATTATTTACCATCCTTCAGAAGATCCCAACAACGATGAAGTAAACTCCAAGCTAGCTCGAGATGAGGTGAAGAGGTCACTTGCTTTCCACTCACCCTCTGAACATGACAGACGCAATGAAAGCACTGGCCGCGATACTCCTGTCACGCATCATTTCCCATCTAGCTTCATTACCGACAGACATCCTGTAGCTGCACTCCAGACTAATCTCAGATCGATCCCAGATCTTACCCCGCTCCCCCCGAGAGAACAAGAACAATCCGGCCCAAAAATAAGTGTCAAAAGCCTCGGTCAACTCACGCAAATCCCAGAATTCCGAGTTCCAGAGCATTCTTTCAAAAACAATGACATCAAACCTGAAGTTTATGAAGAGGAGACTCCGGTAGACCTAAGCACAAGCGACAATAACTGTGATGTTCTTGATCTCAGCAAGAAGAAGCGCGATAGTGACAATGATGAACCAAAAGCTCTGACGCCCTCACGTCCAGCTTTTGAACCTGACGCGGCATCGGTTGCGGCGACAGCTTTTGAAAAAACGAGGCTATTGCTGGCCCAGCAAAGCCTCTTTGAAAACACTCTCCCCAAGATAGACCCTGCTTACTACGCAACTCAACTGTCTCAACTTTATGCGGGAGCTGTGCCTGGACTGCACGGCCTCCCTATACCTCCTTCTTTTCCTTACTTTCTCCAgccaactttttttccccaccCTACCGACTCCCCCGAGATGACAGAAATAAAGCAGCGAATTCAAAAAGAAATCTTCCGTGGCTTTAGCATGTCTGGTGGACGACTTGTCCCAAACGAGCAGGATATACAACCAAAACAGGAACCCGAACCGGAGATTGAAGAAAAACCAGCACCACTCGTGATTTCTCCTGTACCATCCCCTCTGTCAGAATCTCCACGACCGGTATCCAATAGCAACAGTATGGTATCACAGACTGATTCCGTCAAAATGGTGATCAAGAACGGTGTTCTCATGCCAAAGCAAAAACAAAGGCGTTACCGTACTGAGCGCCCGTTTTCCTGCTCCCAATGCTCTGCTAGATTCACTCTGCGATCAAACATGGAGCGTCATGTGAAGCAGCAACATCCTCAACACTGGAGTGTCAGACGACCAGCGCCAAGGGCCCCTCCACCGTACCCATCATCCGATGCCTTAGCTGACCGCGTGAAGTTCGCATTACTGGCGCGTCAACTCGAAAGACCACTTCAGCAATCTGATCACTCACCTATCCGTCGTGACTCAGATGAGGTTGCCGACAACGAGGAAGATGAAGACGATGCTTTGGTCATTGATGAAGAACCAGAGACGGAACCTGAAGAGCACTCGGCAGCAAAACGCGCCGCAGCGGAGATCCTCATGGCTACCTGCCAGCAGGAGCTGAATAAAGACTTTGATCTCAAAATCGCTGGCAATCTCATCAGTAAGCCAGTTACGGACAAAATTGAGGCAGAAGTAGACCCTACACCTTTGATGCCTATGCCTGTCCCGGTAGTGCCAACGCGTAGTGATGAAGAGGAAGATGAAGAAGGCTTGGTTGCATCAACAAGCGAAGGAAACAACTCTGGAAGCGACGAAAACAAATCTGAATCAGACACCAATCAGCCACCGAAGAAGCGCTCAGCATACAGCCTGGCCCCAAACCGCGTCTCCTGCCCGTACTGCCACCGCAAGTTCCCCTGGTCCTCGTCCTTACGTCGCCATGTGCTCACTCACACTGGGCAGAAACCTTTCAAATGCCCACACTGTCCACTGCTATTCACCACCAAGTCTAACTGCGACAGACATTTGCTTAGAAAGCATGGTGGCTCCGCGCGTGCTATCCTGGCTGAGCCTGTCCCTGATGCCGTCTCCCCACCGCAACCTGCCACCGACATCCGAACAGTGCCAGAAAGGCCTTTCAAATGTGGCACCTGCCCCACCAGCACTTTTTCATCCATGGAGTCTTTGAAGAAGCACATTTCCTCTCGCCACGGTTCACTAGAATCCCAACCCAGCTCTCCGAACCCAGATAATCATGACGAAAGTCTGGACGGTATGGTGTTCAAGTGTCATCTGTGTGAAGCATCTTATCATGACCGAACAGGAGCATTGAATCATCTGGCCAATGTCCATGCAACGGAATACGAACAGCTTGTCAGCAAGGGAGCTTTGGATGGGACTAGTGACAAGAGCGAGAATACTGATGATGACGACAGAGGGAAGTTTCCTGATCATGCTAATAGGAAGGTCGTCTGCGCGTTCTGCGTCCGTCGTTTCTGGTCAGCCGAGGACCTTCGTCGTCACATGCGGACGCACTCCGGCGAACGTCCCTTCGCGTGTGACCTCTGCCGACGACGCTTCACACTGAAGCACAGCATGCTTCGCCACCGCAAGAAGCACAGGGAggagactgatgatgatgaggcctCGCCGCCGAACACGCCTGAGGAGAAGATCAATGGCTACAACTTCCAAGACGATGATTCCGGCAACGAGATCCCAAACAACGTGAACAACAACAACTCCCCTCCCGCTGCCCCTTTCGAGAAGAAACTCCGACTGGACATGACCTCACGTAAATACTCCTCCGAGGAAAACGATGGAGACAACGGCAGCGACCTCATCGGAAAACTTCTTGGGATCCCTGACAAGACCATCAACAAACTGCTGTCGTCCGCAGATGAGGCAGCAAAAATACTCGGCGTGAATAAATGA
Protein Sequence
MQGAAGVSAAPTADPPPSQQIKTEEVCEAKIEAEEMERMIIERQEMRGTRTTSIDSDNRSDRSEEDDCRRARKRAASTSSSPIPMDKRIARFECHKCHHRFDSVNAYDMHRFTVHGDDSRSGYDDLVDFSTKKFPEITRGLHNLRCDLCMRDFVNAQVLDLHRKTCSPSNRIPTPDRDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDGHISNGIRHIDAARDLADIQSILNVTSTGSLLERLTGNRVNLESSVLTPPDTVAKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHSPSEHDRRNESTGRDTPVTHHFPSSFITDRHPVAALQTNLRSIPDLTPLPPREQEQSGPKISVKSLGQLTQIPEFRVPEHSFKNNDIKPEVYEEETPVDLSTSDNNCDVLDLSKKKRDSDNDEPKALTPSRPAFEPDAASVAATAFEKTRLLLAQQSLFENTLPKIDPAYYATQLSQLYAGAVPGLHGLPIPPSFPYFLQPTFFPHPTDSPEMTEIKQRIQKEIFRGFSMSGGRLVPNEQDIQPKQEPEPEIEEKPAPLVISPVPSPLSESPRPVSNSNSMVSQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDALADRVKFALLARQLERPLQQSDHSPIRRDSDEVADNEEDEDDALVIDEEPETEPEEHSAAKRAAAEILMATCQQELNKDFDLKIAGNLISKPVTDKIEAEVDPTPLMPMPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTNQPPKKRSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPVPDAVSPPQPATDIRTVPERPFKCGTCPTSTFSSMESLKKHISSRHGSLESQPSSPNPDNHDESLDGMVFKCHLCEASYHDRTGALNHLANVHATEYEQLVSKGALDGTSDKSENTDDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREETDDDEASPPNTPEEKINGYNFQDDDSGNEIPNNVNNNNSPPAAPFEKKLRLDMTSRKYSSEENDGDNGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK