Basic Information

Insect: Epirrhoe tristata
Gene Symbol: RREB1
Assembly: GCA_951394285.1
Location: OX596158.1:4437436-4453593[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.5 2.3e+02 3.0 6.4 1 23 92 115 92 115 0.93

2 12 5.8 3.9e+02 2.3 0.1 1 22 144 165 144 165 0.92

3 12 0.023 1.5 9.9 0.1 1 23 292 314 292 314 0.97

4 12 0.0012 0.082 13.9 0.4 1 23 323 345 323 345 0.99

5 12 0.00075 0.051 14.5 2.0 1 23 351 374 351 374 0.97

6 12 0.003 0.2 12.6 1.6 1 23 727 750 727 750 0.96

7 12 0.00025 0.017 16.0 1.3 2 23 940 961 939 961 0.97

8 12 0.026 1.7 9.7 5.3 1 23 967 990 967 990 0.97

9 12 0.073 4.9 8.3 1.1 1 23 1023 1047 1023 1047 0.93

10 12 1.2 78 4.5 1.1 1 23 1071 1094 1071 1094 0.90

11 12 0.023 1.6 9.8 0.3 2 23 1134 1155 1133 1155 0.92

12 12 0.029 1.9 9.5 5.3 1 23 1161 1183 1161 1183 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.5	2.3e+02	3.0	6.4	1	23	92	115	92	115	0.93
2	12	5.8	3.9e+02	2.3	0.1	1	22	144	165	144	165	0.92
3	12	0.023	1.5	9.9	0.1	1	23	292	314	292	314	0.97
4	12	0.0012	0.082	13.9	0.4	1	23	323	345	323	345	0.99
5	12	0.00075	0.051	14.5	2.0	1	23	351	374	351	374	0.97
6	12	0.003	0.2	12.6	1.6	1	23	727	750	727	750	0.96
7	12	0.00025	0.017	16.0	1.3	2	23	940	961	939	961	0.97
8	12	0.026	1.7	9.7	5.3	1	23	967	990	967	990	0.97
9	12	0.073	4.9	8.3	1.1	1	23	1023	1047	1023	1047	0.93
10	12	1.2	78	4.5	1.1	1	23	1071	1094	1071	1094	0.90
11	12	0.023	1.6	9.8	0.3	2	23	1134	1155	1133	1155	0.92
12	12	0.029	1.9	9.5	5.3	1	23	1161	1183	1161	1183	0.97

Sequence Information

Coding Sequence: ATGCAGGGCGCCGCTGGTGTCTCCGCGGCCCCCACTGCCGACCCACCACCTTCTCAACAAATCAAAACAGAGGAGGTCTGCGAGGCTAAAATTGAGGCCGAAGAAATGGAAAGGATGATTATTGAACGCCAGGAAATGAGGGGCACTCGGACGACGAGCATCGACAGCGACAACCGCTCCGATAGGAGCGAGGAGGATGACTGTCGACGAGCCAGGAAGCGGGCAGCATCCACCTCTCCTTCACCCATCCCGATGGACAAAAGAATCGCGCGGTTTGAATGCCACAAGTGCCACCACAGATTCGACTCAGTCAACGCGTACGACATGCATCGGTTCACCGTCCACGGCGACGACTCTCGCTCGGGCTACGATGACCTCATCGACTTCTCCACCAAAAAGTTCCCTGAAATCACCCGCGGCCTTCACAACTTCAGATGCGATCTCTGCATGAGAGATTTCGTCAACGCGCAAGTACTAGACCTTCACAGGAAGACGTGCTCCCCATCGAACAGAATACCCACACCCGATCGCGATCGCAGAGAAGATTTCTTCGCGAAACTGGACCTTAGGAACCGGTCATTCGGTATTCCGGGCACGCTGACTCCCCCTATGGAAAGGTTCACGCCAAAGTTCGACGATGGACATATCAGTAATGGTATACGGCATATCGATGCCGCCCGAGACTTGGCAGATATTCAATCGATACTCAACGTCACGTCAACGGGAAGCCTTTTAGAGAGACTCACTGGCAACAGAGTTAATTTAGAAAGTTCCGTGCTGACGCCACCGGACACTGTTGCGAAAGATCGTGACCAGGAAGAGACCCAGGATAACTTCGCCGCTGAATTTAGACGAATGAAACTTCGTGGCGAGTTCCCTTGCAGACTATGCCCGGCTAAATTTCCGAACCTACGTGCGCTGAAAGGGCATAATAGAGTGCATCTTAGTGGTACTGGCCCCGGCCCTTATCAATGCAACATGTGCCCTCATGCGTCTTTGGATAAGGCAGCTCTGGTCAGGCATATGAGGACTCATAACGGCGACCGACCGTACGAATGCGCTGTTTGCAACTACGCTTTTACTACCAAAGCCAATTGTGAACGTCACTTGAGAAACAGACACGCGAAAGTCACCCGAGAAGATGTTAAGCGTTCGATCATTTACCATCCTTCAGAAGACCCCAACAACGATGAAGTAAACTCTAAACTAGCTCGAGATGAGGTAAAGAGGTCACTTGCTTTCCACTCACCCTCTGAACTTGACAGACGCAATGAAAGCACTGGTCGCGATACTCCTGTCACGCATCATTTCCCATCAAGCTTCATTACCGATAGACATCCTGTAGCTGCACTCCAGGCTAATCTCAGATCAATCCCAGATCTTACTCCACTCCCCCCGAGAGAACTAGAACAATCCGGCCCAAAAATTAGCGTCAAAAGCATCGGACAGCTCACACAAATCCCAGAATTTAGAGTTCCAGAGCATTCTTTCAAAAACAATGACATCAAACCCGAAGTTTATGAAGAGGAGACTCCGGTAGATCTAAGCACAAGCGATAATAACTGTGATGTTCTTGATCTTAGCAAGAAGAAGCGTGATAGTGACAATGATGAACCAAAAGCTCTGACGCCTTCACGTCCAGCTTTTGAACCTGACGCAGCAGTAGTTGCGGCGACAGCTTTTGAAAAGACGAGGCTATTACTGGCCCAGCAAAGCCTCTTCGAAAACACTCTCCCCAAGATAGACCCTGCTTACTACGCCACTCAACTGTCTCAACTTTACGCGGGAGCTGTGCCTGGACTGCACGGCCTCCCCATACCTCCTTCTTTTCCTTACTTTCTTCAGCCATCTTTTTTTCCCCACCCTACCGACTCTCCCGAATTAACGGAAATAAAGCAGCGAATCCAAAAAGAAATCATCCGAGGCCTTAGCATGTCTGGTGGGCGACTTGTCCCAAACGAGCAGGATATACAGCCGAAGCAGGAACCCGAACCGGAGCTTGAAGAGAAACCAGCACCACTCGTGATTTCTCCTGTACCATCCCCTCTCTCAGAATCTCCACGACCGGTATCCAATAGCAACAGTATGGTACCGCAGACTGATTCCGTAAAAATGGTGATCAAGAACGGTGTTCTCATGCCAAAGCAGAAACAGAGGCGTTACCGTACTGAGCGCCCGTTTTCCTGCTCCCAATGCTCTGCTAGGTTCACTCTACGATCGAACATGGAGCGTCATGTGAAACAGCAACATCCTCAACACTGGAGTGTCAGACGACCAGCCCCAAGGGCCCCTCCACCGTACCCATCATCCGATGCTTTAGCTGACCGCGTGAAATTCGCATTACTGGCACGACACCTCGAAAGACCACTTCAGCAATCTGATCACTCACCTATCCGTCGTGACTCAGATGAGGTTGCTGACAACGAGGAAGATGAAGACGATGCTTTGGTCATTGACGAAGAACCAGAGATGGAACCTGAAGAGCACTCGGCAGCAAAACGCGCTGCAGCGGAGATCCTCATGGCTACCTGCCAGCAGGAGTTGAACAAAGACTTTGATCTTAAAATCGCTGGCAATCTCATCAGTAAGCCAGTTGTGGACAAAATTGAGGCAGAAGTAGACCCTACACCGTTGATGCAAGAGCCTATGCCTGTACCGGTGGTGCCAACGCGCAGCGATGAGGAGGAAGATGAAGAAGGCTTGGTTGCATCAACTAGCGAAGGAAACAACTCTGGCAGCgacgaaaacaaGTCAGAATCAGACACCAATCAGCCGCCGAAAAAGCGCTCAGCATACAGCCTAGCCCCAAACCGTGTCTCCTGCCCGTACTGCCACCGCAAGTTCCCCTGGTCTTCATCACTGCGCCGCCATGTGCTCACTCACACTGGGCAGAAGCCTTTCAAATGCCCACACTGCCCTCTGCTGTTCACCACCAAATCTAACTGCGACAGACACTTGCTAAGAAAGCATGGTGGCTCCGCGCGTGCTATCCTGGCCGAGCCTGTCCCTGATGCTGTCTCCCCACCGCAACCTGCCACTGACATCCGAACAGTGCCAGAAAGGCCTTTCAAATGTGGCACCTGCCCCACCAGCACTTTTTCATCCATGGAGTCTTTGAAGAAGCACATATCCTCTCGCCATGGTTCAGTAGAATCCCAACCCAGCTCTCCGAACCCAGATAATCATGATGAAAGTCTGGACGGTATGGTGTTCAAGTGTCATCTGTGTGAGGCATCTTATCATGATCGAAATGGGGCATTGAACCATCTGGCCAATGTTCATGCTACGGAGTACGAACAGCTTGTCAGCAAGGGAGCTTTGGATGGGACTAGTGACAAGAGCGAGAATACTGATGATGACGACAGAGGGAAGTTTCCTGATCATGCTAATAGGAAGGTCGTTTGCGCATTCTGCATTCGTCGTTTCTGGTCAGCTGAAGACCTTCGCCGTCATATGCGCACACACTCCGGCGAGCGTCCCTTCGCGTGCGACCTCTGTCGACGACGCTTCACTCTGAAGCACAGCATGCTTCGCCACCGCAAGAAGCACAGGGAGgagactgatgatgatgacgcctCACCGCCGAACACGCCCGAAGAGAAGATCAATGGCTACAACTTCCAAGACGATGATTCCGGCAACGAGATCCCAAACAACGTGAACAACAACAACTCCCCTCCCGCTGCCCCTTTCGAGAAGAAACTCCGCCTGGACATGACCTCACGCAAATACTCCTCCGAGGAAAACGATGGAGAAAACGGCAGCGACCTCATCGGAAAACTCCTTGGTATCCCTGACAAGACCATCAACAAACTGCTGTCGTCCGCAGATGAGGCAGCAAAAATACTCGGCGTGAATAAATGA
Protein Sequence: MQGAAGVSAAPTADPPPSQQIKTEEVCEAKIEAEEMERMIIERQEMRGTRTTSIDSDNRSDRSEEDDCRRARKRAASTSPSPIPMDKRIARFECHKCHHRFDSVNAYDMHRFTVHGDDSRSGYDDLIDFSTKKFPEITRGLHNFRCDLCMRDFVNAQVLDLHRKTCSPSNRIPTPDRDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDGHISNGIRHIDAARDLADIQSILNVTSTGSLLERLTGNRVNLESSVLTPPDTVAKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHSPSELDRRNESTGRDTPVTHHFPSSFITDRHPVAALQANLRSIPDLTPLPPRELEQSGPKISVKSIGQLTQIPEFRVPEHSFKNNDIKPEVYEEETPVDLSTSDNNCDVLDLSKKKRDSDNDEPKALTPSRPAFEPDAAVVAATAFEKTRLLLAQQSLFENTLPKIDPAYYATQLSQLYAGAVPGLHGLPIPPSFPYFLQPSFFPHPTDSPELTEIKQRIQKEIIRGLSMSGGRLVPNEQDIQPKQEPEPELEEKPAPLVISPVPSPLSESPRPVSNSNSMVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDALADRVKFALLARHLERPLQQSDHSPIRRDSDEVADNEEDEDDALVIDEEPEMEPEEHSAAKRAAAEILMATCQQELNKDFDLKIAGNLISKPVVDKIEAEVDPTPLMQEPMPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTNQPPKKRSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPVPDAVSPPQPATDIRTVPERPFKCGTCPTSTFSSMESLKKHISSRHGSVESQPSSPNPDNHDESLDGMVFKCHLCEASYHDRNGALNHLANVHATEYEQLVSKGALDGTSDKSENTDDDDRGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREETDDDDASPPNTPEEKINGYNFQDDDSGNEIPNNVNNNNSPPAAPFEKKLRLDMTSRKYSSEENDGENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00661758;
90% Identity: iTF_00661758;
80% Identity: -