Basic Information

Insect: Eupithecia subumbrata
Gene Symbol: RREB1
Assembly: GCA_949316285.1
Location: OX438647.1:5830410-5845487[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.19 16 7.1 1.4 1 23 91 114 91 114 0.91

2 12 4.4 3.7e+02 2.8 0.1 1 22 143 164 143 164 0.93

3 12 0.025 2.1 9.9 0.1 1 23 291 313 291 313 0.97

4 12 0.0013 0.11 13.9 0.4 1 23 322 344 322 344 0.99

5 12 0.00082 0.07 14.5 2.0 1 23 350 373 350 373 0.97

6 12 0.0033 0.28 12.6 1.6 1 23 723 746 723 746 0.96

7 12 0.00027 0.023 16.0 1.3 2 23 932 953 931 953 0.97

8 12 0.028 2.4 9.7 5.3 1 23 959 982 959 982 0.97

9 12 0.036 3.1 9.3 0.7 1 23 1015 1039 1015 1039 0.93

10 12 0.14 12 7.5 0.4 1 23 1062 1085 1062 1085 0.94

11 12 0.002 0.17 13.3 0.2 2 23 1125 1146 1124 1146 0.96

12 12 0.031 2.7 9.6 5.3 1 23 1152 1174 1152 1174 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.19	16	7.1	1.4	1	23	91	114	91	114	0.91
2	12	4.4	3.7e+02	2.8	0.1	1	22	143	164	143	164	0.93
3	12	0.025	2.1	9.9	0.1	1	23	291	313	291	313	0.97
4	12	0.0013	0.11	13.9	0.4	1	23	322	344	322	344	0.99
5	12	0.00082	0.07	14.5	2.0	1	23	350	373	350	373	0.97
6	12	0.0033	0.28	12.6	1.6	1	23	723	746	723	746	0.96
7	12	0.00027	0.023	16.0	1.3	2	23	932	953	931	953	0.97
8	12	0.028	2.4	9.7	5.3	1	23	959	982	959	982	0.97
9	12	0.036	3.1	9.3	0.7	1	23	1015	1039	1015	1039	0.93
10	12	0.14	12	7.5	0.4	1	23	1062	1085	1062	1085	0.94
11	12	0.002	0.17	13.3	0.2	2	23	1125	1146	1124	1146	0.96
12	12	0.031	2.7	9.6	5.3	1	23	1152	1174	1152	1174	0.97

Sequence Information

Coding Sequence: ATGCAGGGCGCTGCCGGCGTGCCTGCGGCCCCCGCCTCAGAACCACCCCCCTCGCAACAAATCAAAACAGAGGAAGTTGAGGCTAAAATCGAGGCCGAGGAAATGGAAAGGATGATTGTCGAGCGGCAGGAGCTGAGAGGCACTCGCACCACCAGCATCGACAGCGACAACCGCTCCGATCGGAGCGAGGAGGAGGAGTGTCGCCGCGCGAGGAAGCGAGCCGCCTCCGCCTCCCCCTCGCCGATGCCCCTGGACAAGAGGATCGCACGTTTCGAATGCCCAACATGCCACCAAAGATTCGACTCCGGGAACGCATTCGACATGCACCGATTCACAGCCCACGGCGACGACTCCCGCTCGGGATACGAAGATCTCGTCGACTTCTCCAACAAAAAGTTCCCTGAAATCACCCGCGGACTCCACAACTTCCGATGCGATCTGTGCATGAGAGATTTCGTCAACGCTCAAGTTCTGGATATCCACAGGAAGACGTGCTCCCCTTCCAAcagaataccaacacccgaccgCGATCGCAGAGAAGATTTCTTTGCGAAACTGGACCTTAGAAACAGGTCGTTTGGTATTCCGGGCACGTTGACTCCGCCTATGGAGAGGTTCACGACAAAGTTTGACGATGGACATATCAGTAACGGTATGCGGCATATGGACGCCGCCCGAGACTTGGCAGATATTCAATCGATACTCAACGTCACGTCGACGGGAAGCCTTTTAGAGAGACTCACTGGCACCAGAGTCAATTTAGAAAGTTCCGTGCTGACGCCACCGGACACTATTGGGAAAGATCGCGACCAGGAAGAGACGCAAGACAACTTCGCCGCTGAGTTCAGACGAATGAAGCTACGGGGAGAATTTCCTTGTAGATTATGTCCCGCAAAATTTCCGAATCTACGAGCCCTGAAGGGACATAACAGAGTGCATCTCAGCGGCACTGGCCCCGGGCCTTATCAATGCAACATGTGTCCGCACGCTTCCCTGGACAAGGCAGCGCTGGTACGGCACATGAGGACGCACAACGGAGATAGACCTTACGAATGCGCTGTTTGCAACTACGCCTTCACTACCAAAGCCAACTGCGAAAGACATTTGAGAAACAGACACGCTAAAGTCACTAGAGAAGATGTTAAGCGTTCTATCATTTACCATCCGTCTGAAGATCCTAACAACGACGAGGTCAACTCAAAACTGGCACGAGATGAGGTAAAACGATCTCTCACTTTCCATTCTCCGCCTGATATTGACCGGCGCAGCGAAAGCACTGGCCGAGATACTCCGGTATCACACCATTTCTCACCTGGCTTCATAACTAAAGGACATCCGGTGGCTGCGCTGACAACAAAGCCAATCCCCGATCTAACACCGCTTCCACCGAGGGAACTTGACCCACCCAAACCGAAAATTAACGTCATAAACATCGGGCAGCTCACACAGATTCCAGAATTCAGGGTTCCAGAGCTATCATTCAAGAACAACGATATCAATTCCGATGTCTATGATGAGGAAGCTCCAGTAGATTTGAGCCGAAATGACAATAACTGTGACGTTCTTGATCTCAGCAAGAAGAAGCGTGACAGCGACAATGAGGAGCCAAAACCTACCACTCCCTCACGTCCGGCCTTCGAAGCCGATGCAGCATCGGCTGCAGCTACAGCATTCGAGAAAACAAGACTGCTGCTCGCTCAACAGCGACTTTTCGAAAATACCCTTCCAAAGATTGACCCAGCTTACTACGCAACTCAACTTTCTCAACTCTATGCCGGAGCGGTCCCCAGTCTGCCCGGTCTTCCTATACCCCCTTCTTTTCCTTATTTTCTCCAGCCTTCTTTTTTTCCTCACCCTTCTGACTCCCCCGAAATGACAGAGATCAAACAACGCATTCAAAAGGAAATCATTCGCGGGCTGAGCATGTCTGGTGGGAGGCTCGTCCCTAATGAAGCCGAGATTCAGCCGAAGCAGGAGCCTGAACCCGAGATTGAAGAGAAGCCAGCCCCTTTGGTAATCTCTCCCGCACCTTCGCCGCTCTCGGAATCTCCACGCCCGACGTCAAACGGTGGAATGGTCTCGCAAACAGATTCAGTGAAAATGGTAATCAAGAACGGAGTTCTCATGCCAAAGCAGAAGCAAAGACGTTACCGTACAGAAAGACCTTTTTCTTGCTCCCAATGCTCTGCACGATTCACCTTGCGCTCGAACATGGAGCGCCACGTGAAGCAGCAACATCCTCAGCACTGGAGCGTGAGACGGCCGGCCCCTAGGGCTCCACCACCGTACCCCACATCTGATGCTTTGGCTGATCGTGTGAAATTTGCATTGCTAGCCCGCCATCTCGAAAGACCACTGCAACAATCAGAGCACTCACCTATCCGTCGTGACTCGGACGAAGTTGCTGATAATGAAGAAGACGAGGACGATACTTTGGTTATTGATGAAGAACCAGAGATGGAGCCGGAAGAACATCCAGCAGCAAAACGAGCAGCTGCTGAAATTCTCATGGCAACATGCCAGCAGGAAATACACAAGGACTTTGATCTGAAAATTGCTGGCAACCTTATCAACAAGCCAGTCGACAAAATTGAGACTGGTACTGATCCTATACCGTTAGATGCCTTGCCGGTTCCGGTGGTACCTACAAGGAGTGATGAAGAGGAAGATGAAGAAGGCTTGGTTGCTTCTACCAGTGAGGGCAACAACTCTGGCAGCGATGAGAAATCCGAATCCGATGGAACTCAACCGCCAAAGAAGCGCTCAGCTTACAGCTTAGCCCCCAACCGCGTGTCGTGCCCCTACTGCCACCGGAAGTTCCCCTGGTCTTCCTCCCTTCGCCGCCATGTCCTCACCCACACCGGACAGAAGCCTTTCAAGTGCCCCCACTGCCCCTTGCTCTTCACCACTAAATCCAACTGCGACAGACACCTTCTGCGAAAACATGGGGGCTCAGCGCGAGCAATCCTCGCCGAGCCGGTTCCCGATGCCGTCTCCCCACCACAACCAGTAAACGACTTCAGAACCGTCCCAGAACGTCCGTACAAATGCGGGACTTGTCCCACCAGCACATTTTCCTCTATGGACAGTTTAAAGAAGCATATAGCTTCCCGCCATGGTTCCGGAGAGTCTCAACCAAGCTCGCCAAGCCCTGACCACGATGAGACACTAGACGGTTTAGTCTTCAAGTGCCACCTCTGTGAGGCTGGGTACAATGACCGAAGTGCGACGCTGAACCATCTGGCGAACGCTCATGCGACTGAGTATGAGCAACTGGTCAGCAAGGGGGCATTGGATGCTGCCAGTGACAAGAGCGAAAACACGGATGACGATGACAGGGGAAAGTTTCCTGATCACGCTAATAGAAAGGTGGTCTGCGCATTCTGCGTCCGTCGTTTCTGGTCTGCGGAAGACCTGCGTCGTCACATGCGGACCCACTCGGGCGAGCGTCCCTTCGCCTGCGACCTCTGTCGGCGGCGATTTACGCTGAAGCACAGCATGCTGCGTCACAGGAAGAAGCATAGGGAAGAGACTGATGATGAGGAGGCTTGCAGCACGCCGGAGGAGAAGACTAATGGCTACCGCTTCCAAGACGAAGACTCCGGCAACGAAATCCCAAACAACGTGAACAACAACAACTCCCCGCCCGCAGCGCCCTACGACAAGAAAATCAAACTGGACATGATGTCCCGGAAATACTCCTCCGAAGAAAACGACGGAGAGAATGGCAGCGATCTGATTGGGAAACTCCTTGGCATCCCCGATAAGACGATCAACAAGCTCCTGTCTTCAGCGGACGAGGCAGCCAAGATACTGGGAGTGAATAAATGA
Protein Sequence: MQGAAGVPAAPASEPPPSQQIKTEEVEAKIEAEEMERMIVERQELRGTRTTSIDSDNRSDRSEEEECRRARKRAASASPSPMPLDKRIARFECPTCHQRFDSGNAFDMHRFTAHGDDSRSGYEDLVDFSNKKFPEITRGLHNFRCDLCMRDFVNAQVLDIHRKTCSPSNRIPTPDRDRREDFFAKLDLRNRSFGIPGTLTPPMERFTTKFDDGHISNGMRHMDAARDLADIQSILNVTSTGSLLERLTGTRVNLESSVLTPPDTIGKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLTFHSPPDIDRRSESTGRDTPVSHHFSPGFITKGHPVAALTTKPIPDLTPLPPRELDPPKPKINVINIGQLTQIPEFRVPELSFKNNDINSDVYDEEAPVDLSRNDNNCDVLDLSKKKRDSDNEEPKPTTPSRPAFEADAASAAATAFEKTRLLLAQQRLFENTLPKIDPAYYATQLSQLYAGAVPSLPGLPIPPSFPYFLQPSFFPHPSDSPEMTEIKQRIQKEIIRGLSMSGGRLVPNEAEIQPKQEPEPEIEEKPAPLVISPAPSPLSESPRPTSNGGMVSQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTSDALADRVKFALLARHLERPLQQSEHSPIRRDSDEVADNEEDEDDTLVIDEEPEMEPEEHPAAKRAAAEILMATCQQEIHKDFDLKIAGNLINKPVDKIETGTDPIPLDALPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDEKSESDGTQPPKKRSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPVPDAVSPPQPVNDFRTVPERPYKCGTCPTSTFSSMDSLKKHIASRHGSGESQPSSPSPDHDETLDGLVFKCHLCEAGYNDRSATLNHLANAHATEYEQLVSKGALDAASDKSENTDDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREETDDEEACSTPEEKTNGYRFQDEDSGNEIPNNVNNNNSPPAAPYDKKIKLDMMSRKYSSEENDGENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00661758;
90% Identity: iTF_00699587;
80% Identity: -