Basic Information

Insect: Gandaritis pyraliata
Gene Symbol: RREB1_1
Assembly: GCA_947859175.1
Location: OX401874.1:3590679-3608125[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.27 16 6.4 3.4 1 23 91 114 91 114 0.94

2 11 0.022 1.3 9.9 0.1 1 23 291 313 291 313 0.97

3 11 0.0012 0.068 13.9 0.4 1 23 322 344 322 344 0.99

4 11 0.00072 0.042 14.5 2.0 1 23 350 373 350 373 0.97

5 11 0.0029 0.17 12.6 1.6 1 23 725 748 725 748 0.96

6 11 0.00024 0.014 16.0 1.3 2 23 939 960 938 960 0.97

7 11 0.025 1.4 9.7 5.3 1 23 966 989 966 989 0.97

8 11 0.074 4.3 8.2 1.1 1 23 1022 1046 1022 1046 0.93

9 11 2 1.2e+02 3.7 0.9 1 23 1070 1093 1070 1093 0.90

10 11 0.0018 0.1 13.3 0.2 2 23 1133 1154 1132 1154 0.96

11 11 0.028 1.6 9.5 5.3 1 23 1160 1182 1160 1182 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.27	16	6.4	3.4	1	23	91	114	91	114	0.94
2	11	0.022	1.3	9.9	0.1	1	23	291	313	291	313	0.97
3	11	0.0012	0.068	13.9	0.4	1	23	322	344	322	344	0.99
4	11	0.00072	0.042	14.5	2.0	1	23	350	373	350	373	0.97
5	11	0.0029	0.17	12.6	1.6	1	23	725	748	725	748	0.96
6	11	0.00024	0.014	16.0	1.3	2	23	939	960	938	960	0.97
7	11	0.025	1.4	9.7	5.3	1	23	966	989	966	989	0.97
8	11	0.074	4.3	8.2	1.1	1	23	1022	1046	1022	1046	0.93
9	11	2	1.2e+02	3.7	0.9	1	23	1070	1093	1070	1093	0.90
10	11	0.0018	0.1	13.3	0.2	2	23	1133	1154	1132	1154	0.96
11	11	0.028	1.6	9.5	5.3	1	23	1160	1182	1160	1182	0.97

Sequence Information

Coding Sequence: ATGCAGGGCGCTGGAGTGTCCGCGGCCCCGGCGGCCGAGCCACCGCCTTCTCAACAAATCAAAACAGAGGCGGTCTGCAAAGCTAAAATCGAGGCCCAGGAAATGGAAAGGATGATAATCGAGCGCCAAGAGTTGCGGGGCACTCGGACGACGAGCATCGACAGCGACAACCGCTCCGACAGAAGCGAGGAGGATGACTGCCGGAGAGCCAGGAAACGGGCAGCATCCTCTTCGCCTACCCCCATTTCCATGGATAAGAGAATAGCGAGGTTCGAATGCCCAAAATGCCACCACAGATTCGATTCAGTCAACGCGTTCGACATGCATCGCTTCACCGCCCACGGAGACGACTCTCGCTCTGGCTACGACGACCTCATAGACTTCTCCACAAAAAAAATCCCCGAAATTACCCGCGGACTACACAACCTCAGATGCGATCTCTGCATGAGAGACTTCAACAACGCACAAATTCTAGACATCCATAGAAAAACGTGCTCACCTTCAAACAGAATACCCACGCCCGACCGCGATCGAAGAGAAGATTTTTTCGCGAAACTAGACCTTAGAAACAGATCGTTCGGTATTCCGGGCACGTTGACTCCCCCTATGGAGAGGTTCACGCCAAAGTTCGACGATGGATATATCGGTAACGGCATACGACATATAGACGCCGCCCGAGACTTGGCAGATATTCAATCGATACTCAACGTCACGTCAACAGGAAGCCTTTTAGAGAGACTCACTGGCACCAAAGTCAATTTAGAAAGTTCTGTGCTAACACCACCGGACACTATTGCGAAAGACCGTGACCAGGAGGAATCGCAAGACAACTTTGCAGCTGAATTTAGACGAATGAAACTTCGTGGTGAATTCCCTTGCCGATTATGCCCTGCTAAATTCCCAAACCTGCGAGCCTTGAAGGGACACAACAGAGTGCACCTCAGCGGAACAGGCCCTGGCCCTTATCAATGCAACATGTGCCCTCATGCTTCGTTAGACAAAGCAGCTTTAGTCAGACATATGAGAACTCATAACGGCGACCGTCCTTACGAATGTGCTGTTTGCAACTACGCGTTCACTACCAAAGCTAACTGCGAGCGACACTTGAGGAACAGACACGCCAAGGTGACCAGAGAAGATGTAAAACGTTCAATAATCTACCATCCTTCAGAAGATCCCAACAACGATGAAGTGAACTCTAAACTAGCTCGAGAGGAGGTCAAGAGGTCACTCGCTTTCCACTCTCCCTCTGAAATCGAGAGACGCAATGATAGTACTGGTCGCGATACTCCTGTGACGCATCATTTCTCACCTAGCTTCATAACCGAAAGACACCCTGTGGCCTCACTAACTTCAAAGCCGATTCCCGATCTAGCACCACTACCCCCAAGGGAACCAGAACTAACCGGGCCAAGAATCAATGTCAAAAGTATAGGGCAACTGACGCAAATTCCAGAATTCAGAGTGCCGGATCTATCATTCAAACCGAACGAGATCAAGCCTGAAGTCTACGAAGAAGAGACTCCAGTAGATCTGAGCACGAATGACAAAAACAACTGTGATGTACTGGATCTCAGCAAGAAAAAGCGTGATAGTGACAACGATGAACCTAAAGATCTTACTCCTCCACGACCAGCTTTTGAGCCCGATACAGCAGCAGTCGCAGCTACAGCTTTTGAAAAGACAAGGCTATTGCTTGCCCAACAAAGGTTCTTGGAAAACTCACTCCCAAAGATAGATCCCGCTTACTACGCCACTCAACTTTCCCAACTCTACGCCGGAGCAGTTCCTGGACTGCACGGTCTTCCTCTTCCACCTTCTTTTCCTTATTTTCTTCAGCCTTCTTTTTTTCCCCACCCTACTGACTCACCCGAGATGACAGAAATAAAGCAGCGTATTCAGAAGGAAATCATTCGAGGCCTTAGCATGTCTGGTGGAAGACTGGTCCCAAACGAGCAGGAGATTCAACCTAAACAAGAACCTGAACCAGAGATCGAAGAGAAGCCAGCACCACTCGCAATCTCTCCTGTGCCATCGCCCCGTTCAGAATCTCCACGACCAATGTCCAACAACAACAATATGGTTACACAGACGGATTCTGTCAAAATGGTGATCAAGAACGGTGTTCTCATGCCGAAGCAGAAGCAGCGGCGCTACCGTACCGAGCGACCTTTTTCCTGTTCTCAATGCTCAGCGCGTTTCACCCTCCGATCCAACATGGAGCGTCACGTGAAGCAGCAGCATCCTCAACACTGGAGCGTAAGACGACCAGCTCCGAGGGCGCCTCCGCCATATCCATCTTCGGATGCTCTAGCTGATCGTGTAAAGTTCGCGTTACTTGCGCGTCACCTTGAAAGACCTCTCCAGCAGTCTGATCATTCACCAATCCGTCGCGATTCCGACGAAGTTGCTGACAACGAGGAAGATGAAGATGATGCTTTAGTCATCGACGAAGAACCAGAGCTGGAACCGGAAGAGCATTCAGCTGCGAAGCGCGCTGCAGCAGAAATCCTCATGGCGACCTGCCAACAAGAGTTAAACAAGGACTTTGATCTCAAAATCACTGGCAATCTCATCAACAAGCCAGTTGCCGATAAGATGGAGACAGGGTCGGACCCTATTCCGTTGATGCAAGAGCCCTTGCCTGTTCCGGTGGTGCCGACGCGGAGTGATGAGGAAGAAGATGAAGAAGGATTGGTTGCCTCTACTAGTGAGGGGAATAACTCTGGAAGCGATGAGAACAAGTCGGAATCTGACACTGGAACCCAGCCACCGAAGAAGCGTTCAGCTTACAGCCTTGCACCAAACCGCGTCTCCTGCCCTTACTGCCACCGGAAATTCCCGTGGTCTTCGTCATTACGCCGCCATGTCCTCACACACACTGGACAAAAGCCCTTCAAATGCCCCCACTGCCCTCTACTCTTCACCACCAAGTCCAATTGCGACAGACATTTGCTGAGAAAGCATGGCGGTTCTGCAAGGGCTATACTAGCCGAACCTGTTTCTGATGCCATATCCCCTCCGCAGCCGGTTAACGACATCCGAACAGTACCAGAGCGGCCGTACAAATGCGGCACTTGCCCTACCAGCACCTTTTCATCCATGGAAACTTTGAAGAAGCACATTTCCTCTCGCCACTGTTCCATCGAATCCCAACCAAGTTCACCTACTCCAGATAATCACGAGGAGACTGTAGACGGCATGGTCTTTAAATGCCATCTCTGTGAAGCGGCGTACCATGATCGGACCGGAGCTTTGAACCACCTGGCTAACCTCCACGCTACGGAGTACGAACAGTTGGTTAGCAAGGGGGCTTTGGACGGTACGAGTGACAAGAGCGAAAATACTGATGATGACGACAGGGGAAAGTTTCCTGACCATGCTAATAGAAAGGTGGTCTGCGCATTCTGCGTTCGTCGTTTCTGGTCTGCCGAGGACCTGCGTCGTCACATGCGGACTCACTCCGGCGAACGTCCCTTCGCTTGCGACCTCTGCCGACGCCGTTTCACATTGAAGCACAGCATGCTTCGACACCGCAAGAAGCACCGCGAAGAGGTCACTGATGATGATGAGGCTTCGCCGCCGATCACGCCTGAGGAGAAAATCAACGGTTACCGTTTCCAAGATGACGACTCCGGCAACGAAATTCCAAACAACGTGAACAACAACAATTCTCCCCCCGCGGCTCCCTACGAGAAGAAACTCCGACTTGACATGACTTCCCGCAAGTATTCCTCAGAGGAAAACGAAGGAGAAAACGGCAGCGATCTCATTGGAAAACTCCTTGGAATCCCTGACAAAACCATAAACAAACTCCTGTCTTCAGCAGACGAGGCCGCAAAAATACTAGGTGTGAATAAATGA
Protein Sequence: MQGAGVSAAPAAEPPPSQQIKTEAVCKAKIEAQEMERMIIERQELRGTRTTSIDSDNRSDRSEEDDCRRARKRAASSSPTPISMDKRIARFECPKCHHRFDSVNAFDMHRFTAHGDDSRSGYDDLIDFSTKKIPEITRGLHNLRCDLCMRDFNNAQILDIHRKTCSPSNRIPTPDRDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDGYIGNGIRHIDAARDLADIQSILNVTSTGSLLERLTGTKVNLESSVLTPPDTIAKDRDQEESQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHSPSEIERRNDSTGRDTPVTHHFSPSFITERHPVASLTSKPIPDLAPLPPREPELTGPRINVKSIGQLTQIPEFRVPDLSFKPNEIKPEVYEEETPVDLSTNDKNNCDVLDLSKKKRDSDNDEPKDLTPPRPAFEPDTAAVAATAFEKTRLLLAQQRFLENSLPKIDPAYYATQLSQLYAGAVPGLHGLPLPPSFPYFLQPSFFPHPTDSPEMTEIKQRIQKEIIRGLSMSGGRLVPNEQEIQPKQEPEPEIEEKPAPLAISPVPSPRSESPRPMSNNNNMVTQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDALADRVKFALLARHLERPLQQSDHSPIRRDSDEVADNEEDEDDALVIDEEPELEPEEHSAAKRAAAEILMATCQQELNKDFDLKITGNLINKPVADKMETGSDPIPLMQEPLPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKRSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPVSDAISPPQPVNDIRTVPERPYKCGTCPTSTFSSMETLKKHISSRHCSIESQPSSPTPDNHEETVDGMVFKCHLCEAAYHDRTGALNHLANLHATEYEQLVSKGALDGTSDKSENTDDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEVTDDDEASPPITPEEKINGYRFQDDDSGNEIPNNVNNNNSPPAAPYEKKLRLDMTSRKYSSEENEGENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00661758;
90% Identity: iTF_01220151;
80% Identity: -