Basic Information

Insect: Thera obeliscata
Gene Symbol: RREB1
Assembly: GCA_947578465.1
Location: OX387916.1:21155999-21161033[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.14 8.6 7.5 1.7 1 23 57 80 57 80 0.93

2 12 2.6 1.6e+02 3.5 0.1 1 22 109 130 109 130 0.94

3 12 0.023 1.4 9.9 0.1 1 23 257 279 257 279 0.97

4 12 0.0012 0.076 13.9 0.4 1 23 288 310 288 310 0.99

5 12 0.00077 0.047 14.6 2.0 1 23 316 339 316 339 0.97

6 12 0.0031 0.19 12.7 1.6 1 23 688 711 688 711 0.96

7 12 0.00026 0.016 16.1 1.3 2 23 902 923 901 923 0.97

8 12 0.026 1.6 9.7 5.3 1 23 929 952 929 952 0.97

9 12 2.1 1.3e+02 3.8 1.9 1 23 985 1009 985 1009 0.84

10 12 1 64 4.7 1.2 1 23 1033 1056 1033 1056 0.91

11 12 0.0019 0.12 13.3 0.2 2 23 1096 1117 1095 1117 0.96

12 12 0.029 1.8 9.6 5.3 1 23 1123 1145 1123 1145 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.14	8.6	7.5	1.7	1	23	57	80	57	80	0.93
2	12	2.6	1.6e+02	3.5	0.1	1	22	109	130	109	130	0.94
3	12	0.023	1.4	9.9	0.1	1	23	257	279	257	279	0.97
4	12	0.0012	0.076	13.9	0.4	1	23	288	310	288	310	0.99
5	12	0.00077	0.047	14.6	2.0	1	23	316	339	316	339	0.97
6	12	0.0031	0.19	12.7	1.6	1	23	688	711	688	711	0.96
7	12	0.00026	0.016	16.1	1.3	2	23	902	923	901	923	0.97
8	12	0.026	1.6	9.7	5.3	1	23	929	952	929	952	0.97
9	12	2.1	1.3e+02	3.8	1.9	1	23	985	1009	985	1009	0.84
10	12	1	64	4.7	1.2	1	23	1033	1056	1033	1056	0.91
11	12	0.0019	0.12	13.3	0.2	2	23	1096	1117	1095	1117	0.96
12	12	0.029	1.8	9.6	5.3	1	23	1123	1145	1123	1145	0.97

Sequence Information

Coding Sequence: ATGGAAAGGATGATTATCGAGCGCCAGGAGTTGAGAGGCACTCGCACAACGAGCATCGACAGCGACAACCGCTCCGATAGAAGCGAGGAGGATGACTGCCGAAGAGCCAGAAAACGGCCGGCATCCACCTCCCCTTCCCCCATTTCTTTGGATAAGAGAATAGCGCGGTTCGAATGCCCAAAATGTAACCATAGATTCGATTCAGTGAACGCGTACGACATGCATCGCTTCACCGTCCACGGAGACGACTCTCGCTCCGGCTACGATGACCTCCTCGACTACTCCACCAAAAAGTTCCCTGAAATCACCCGGGGACTCCATAATTTTAGATGTGATCTCTGCATGAGAGAGTTCGTCAACGCACAAGTCTTAGACATCCACAGAAAGACGTGCTCCCCTTTAAACAGAATACCAACGCCCGACCGCGATCGCAGAGAAGATTTTTTCGCGAAACTGGACCTTAGGAACAGGTCGTTAGGTATTCCGGGCACGTTGACTCCCCCTATGGAGAGGTTCACGCCAAAGTTCGACGATGGACATATCGGTAACGGCATACGGAATATCGACGCCGCTCGAGACTTGGCAGATATTCAATCGATACTCCACGTCACGTCAACGGGAAGCCTTTTAGAGAGACTCACTGGCACCAGAGTCAATTTAGAAAGTTCCGTGCTGACGCCACCGGACACTATTACGAGAGATCGTGACCAGGAAGAGACGCAAGACAACTTTGCCGCTGAATTTAGACGCATGAAACTACGTGGGGAATTTCCTTGCAGATTATGCCCTGCTAAATTCCCGAATCTACGAGCCTTGAAGGGGCACAATAGAGTACACCTTAGCGGGACAGGGCCCGGTCCCTATCAATGCAACATGTGCCCTCATGCTTCCTTAGACAAAGCAGCTCTTGTGAGACATATGAGAACTCATAACGGTGACCGTCCGTACGAATGTGCCGTTTGCAACTACGCTTTTACTACTAAAGCCAACTGTGAGCGACACTTGAGAAACAGACACGCCAAAGTCACCCGAGAGGATGTAAAGCGTTCAATTATTTACCATCCTTCAGAAGATCCTAACAACGATGAAGTGAACTCCAAACTCACTCGTGACGAGGTCAAAAGATCTCTCGCTTTCCACACTCCCCCTGAAACCGATAGACGTAATGACAGTTCTGGTCGCGACACTCCTGTGACTCATCATTTCTCACCTAGCTTCATAACCGAAAGGCACCCTGTGGTTTCACTAAATTCAAAACCGATTCCCGACCTAGCACCAATTCCTCCAAGGGAACCAGAACAACCCGTGCCGAGGATCAATGTTATAAACATTGGCCAACTGAAGCAAATTCCAGAATTCAGAGTGCCGGATCTTTCATTTAAGCCCAAAGATATAAAGCCTGAAGTCTACGAAGAAGAGACTCCAGTAGATCTTAGCACGAGCGATAATAACAACTGTGATGTACTCGATCTCAGCAAGAAGAAGCGTGATAGTGACAACGATGAACCTAAAGATCTTACACCTCCGCGACCAGCTTTCGAGCCTGATGCAGCATCAGTCGCAGCTACAGCTTTTGAAAAAACGAGGCTATTACTCGCCCAGCACAGAATGTTTGAAAACTCACTCCCAAAAATAGACTCTGCTTACTATGCCTCTCAACTTTCCCAACTCTACGCTGGAGCAGTTCCTGGACTGCACGGTCTTCCTCTTCCCCCTTCTTTTCCTTACTTTCTACAACCTTCTTTTTTTCCTGACACCCCCGAGATGACAGAAATAAAGCAACGTATTCAATCAGAAATCATTCGAGGCCTCAGCATGTCTGGTGGAAGGCTCGTCCCAAACGAGCAGGAAATTCAGCCTAAACAGGAACCTGAACCAGAGATCGAAGAAAAGCCGGCGCCGCTTGTAATTTCACCTACACCATCGCCTCGCTCAGAATCTCCACGACCAATGTCCAACAACAACAATATGGTATCACAGACAGATTCCGTCAAAATGGTGATCAAGAACGGCGTTCTCATGCCGAAGCAGAAACAGAGAAGATACCGTACTGAGCGGCCTTTTTCTTGCTCGCAATGCTCCGCTAGATTCACTCTTCGATCCAACATGGAACGTCACGTGAAGCAGCAACATCCTCAACACTGGAGTGTACGAAGGCCAGCTCCGAGAGCACCACCGCCATATCCATCTTCAGACGCTTTGACGGACCGCGTAAAGTTCGCGTTACTAGCGCGTCACCTTGAAAGACCCCTCCAGCAATCCGATCATTCACCAATCCGTCGCGATTCAGACGAGGTCGCTGACAACGAGGAAGATGAAGACGATGCTTTAATCATTGATGAAGAACCAGAGCTGGAACCTGAAGAGCATTCAGCTGCCAAGCGCGCTGCAGCCGAAATCCTTATGGCCACCTGCCAACAGGAGTTGAACAAGGACTTTGATCTCAAAATCGCTGGTAATCTAATCAATAAGCCAGCTGCCGATAAGATTGAAACAGGGTCGGACCCTATCTCGCTTGTACAAGATCCCTTGCCAGTTCCGGTGGTACCAACGCGAAGTGATGAGGAAGAAGATGAAGAAGGGCTTGTTGCCTCTACTAGTGAAGGCAATCTCTCTGGAAGCGATGAGAACAAGTCGGAATCCGACACAGGCACCCAGCCACCAAAGAAGCGCTCAGCTTATAGTCTAGCTCCAAACAGAGTCTCCTGCCCTTACTGCCACCGCAAGTTCCCGTGGTCCTCATCATTACGTCGCCATGTGCTCACCCACACTGGACAGAAGCCTTTCAAATGCCCACACTGCCCACTTCTATTCACCACCAAGTCCAACTGCGACAGACATTTGCTGAGGAAGCATGGCGGGTCAGCAAGAGCCATACTAGCAGATCCTGTATCAGATGCCATATCCCCTCCGCAACCGGTGAACGACCTCCGAACAGTGCCAGAAAGGCCTTTCAAATGTGGGAAGTGTCCTACCAGCACCTTTTCATCTGTGGAGACTTTGAAGAAACACAATTTTTCACGCCATTGCTCAGTGGAATCCCAACCTAGCTCACCTAACCCGGAACATCTGGAGGAAACAGTAGATGGGATGGTCTTCAAGTGCCATCTATGTGAAGCTTCTTACCATGACCGAACTGGAGCATTGAACCACTTGGCTAATGTGCACACAACGGAGTATGAACAGCTGGTTAGCAAGGGGGCCTTGGATGGGACGAGTGATAAGAGCGAGAATACTGATGATGACGATAGGGGGAAGTTTCCTGATCATGCAAATAGAAAGGTGGTTTGCGCGTTCTGCGTCCGTCGTTTCTGGTCTGCTGAGGACCTCCGCCGTCATATGCGCACGCATTCCGGAGAACGTCCCTTTGCATGTGACCTCTGCCGCCGTCGGTTCACTCTGAAGCACAGCATGCTTCGTCACCGCAAGAAGCACAGGGAGGAGGCAACTGATGATGATGAGGCTTCGCCGCCGAACACGCCAGAGGACAAAATCAATGGCTACCGTTTCCAAGATGACGATTCTGGCAACGAAATCCCAAATAACGTAAACAACAACAATTCTCCTCCCGCGGCGCCCTATGAGAAGAAACTCCGACTAGACATGACTTCACGCAAGTATTCTTCTGAGGAAAATGACGGTGAAAACGGCAGTGATCTCATCGGGAAACTCCTAGGCATCCCTGACAAGACCATCAATAAACTCCTGTCTTCGGCAGACGAGGCTGCCAAAATACTGGGAGTCAATAAATGA
Protein Sequence: MERMIIERQELRGTRTTSIDSDNRSDRSEEDDCRRARKRPASTSPSPISLDKRIARFECPKCNHRFDSVNAYDMHRFTVHGDDSRSGYDDLLDYSTKKFPEITRGLHNFRCDLCMREFVNAQVLDIHRKTCSPLNRIPTPDRDRREDFFAKLDLRNRSLGIPGTLTPPMERFTPKFDDGHIGNGIRNIDAARDLADIQSILHVTSTGSLLERLTGTRVNLESSVLTPPDTITRDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLTRDEVKRSLAFHTPPETDRRNDSSGRDTPVTHHFSPSFITERHPVVSLNSKPIPDLAPIPPREPEQPVPRINVINIGQLKQIPEFRVPDLSFKPKDIKPEVYEEETPVDLSTSDNNNCDVLDLSKKKRDSDNDEPKDLTPPRPAFEPDAASVAATAFEKTRLLLAQHRMFENSLPKIDSAYYASQLSQLYAGAVPGLHGLPLPPSFPYFLQPSFFPDTPEMTEIKQRIQSEIIRGLSMSGGRLVPNEQEIQPKQEPEPEIEEKPAPLVISPTPSPRSESPRPMSNNNNMVSQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDALTDRVKFALLARHLERPLQQSDHSPIRRDSDEVADNEEDEDDALIIDEEPELEPEEHSAAKRAAAEILMATCQQELNKDFDLKIAGNLINKPAADKIETGSDPISLVQDPLPVPVVPTRSDEEEDEEGLVASTSEGNLSGSDENKSESDTGTQPPKKRSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILADPVSDAISPPQPVNDLRTVPERPFKCGKCPTSTFSSVETLKKHNFSRHCSVESQPSSPNPEHLEETVDGMVFKCHLCEASYHDRTGALNHLANVHTTEYEQLVSKGALDGTSDKSENTDDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEATDDDEASPPNTPEDKINGYRFQDDDSGNEIPNNVNNNNSPPAAPYEKKLRLDMTSRKYSSEENDGENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00661758;
90% Identity: iTF_01220151;
80% Identity: -