Hvit010740.1
Basic Information
- Insect
- Horisme vitalbata
- Gene Symbol
- RREB1
- Assembly
- GCA_951804965.1
- Location
- OX638092.1:25393843-25410214[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.98 10.9 2.5 1 23 91 114 91 114 0.96 2 12 1.5 1.1e+02 4.4 0.2 1 22 143 164 143 164 0.93 3 12 0.025 1.9 9.9 0.1 1 23 291 313 291 313 0.97 4 12 0.0013 0.1 13.9 0.4 1 23 322 344 322 344 0.99 5 12 0.00082 0.064 14.6 2.0 1 23 350 373 350 373 0.97 6 12 0.0033 0.26 12.7 1.6 1 23 668 691 668 691 0.96 7 12 0.00028 0.022 16.1 1.3 2 23 882 903 881 903 0.97 8 12 0.028 2.2 9.8 5.3 1 23 909 932 909 932 0.97 9 12 0.078 6.1 8.4 1.4 1 23 964 988 964 988 0.93 10 12 0.53 41 5.7 0.1 1 23 1012 1035 1012 1035 0.92 11 12 0.002 0.16 13.3 0.2 2 23 1075 1096 1074 1096 0.96 12 12 0.031 2.4 9.6 5.3 1 23 1102 1124 1102 1124 0.97
Sequence Information
- Coding Sequence
- ATGCAGGGCGCGGCTGGCGTGCCCGCGGCCCCCGCGTCCGAACCACCAACATCCCAACAAATCAAAACAGAGGAGGTTTGCAAGGCTAAAATTGAGGCCGAGGAAATGGAAAGGATGATTGTCGAACGTCAGGAGTTCCGGGGCACTCGAACCACAAGCATCGATAGCGACAACTGCTCCGATAGAAGCGAAGAGGATGAATGCCGGAGAGCCAGGAAGCGGGCAGCATCTTCCCCTTCCCCCATCCCCATGGACAAAAGAATCGCTCGGTTCGAATGCCCAAAATGTCACCAAAGATTCGACTCAGTCAACTCATTCGAAATGCATCGCTTCACAGTCCACGGAGACGATTCCCGGTCAGGCTACGACGACCTCGTCGATTTCTCCAACAAAAAGTTTCCGGAAATCACTCGCGGACTCCACAACTTTAGATGTGACTACTGCATGCGAGACTTCATCAACGCACAAGTCCTAGACATCCACAGAAAGACTTGCTCACCGACCAACAGAATACCCACCCCTGACCGCGATCGCAGAGAAGATTTCTTCGCGAAACTAGACCTTAGGAATCGATCGTTCGGTATTCCAGGCACGTTGACTCCCCCTATGGAAAGGTTCACTCCAAAGTTCGAAGATGGACATATCAGTAACGGCATACGACACATCGACGCCGCCCGAGACTTGGCAGATATTCAATCGATACTCAACGTCACGTCAACGGGAAGCCTTTTGGAGAGACTCACTGGCACCAGAGTCAATTTAGAAAGTTCCGTGCTAACGCCACCGGATACTATTGCGAAAGATCGTGATCAGGAAGAGACGCAGGACAACTTTGCCGCCGAGTTTAGACGAATGAAACTACGCGGTGAGTTCCCGTGCAGATTATGCCCAGCAAAATTTCCCAATTTGCGAGCTCTGAAGGGACATAATAGGGTGCATCTCAGCGGTACTGGACCTGGCCCTTATCAGTGCAACATGTGTCCTCACGCGTCATTGGACAAGGCAGCCTTAGTCCGGCACATGAGAACGCACAATGGTGACCGTCCTTACGAATGCGCTGTTTGCAACTACGCATTCACCACCAAAGCTAACTGCGAAAGACACTTGAGAAACAGACATGCAAAAGTCACACGAGAGGATGTGAAGCGTTCTATCATCTACCATCCTTCAGAAGATCCTAACAACGATGAACCAATCCCTGATCTAGCCCCACTCCCTCCTAGGGAACCAGAACCACCTGTGCCAAGAATCAATGTCAAAAGCATCGGGCAGTTGACGCAAATCCCGGAATTCAGGGTGCCAGAACTTTCCTTCAAGAATAACGATATCAAACCTGAAGTTTATGAAGAGGATGCTCCAGTAGATCTGAGCACAGGCGATAACAATAACTGTGATGTTCTGGATCTCAGCAAGAAGAAGCGTGACAGTGACAATGAAGAACCTAAAACTCCAACTCCGTCACGTCCAGCTTTCGAACCCGATGCAGCATCAGTAGCTGCTACAGCTTTTGAAAAAACGAGACTGTTGCTCGCTCAGCAAAGACTCTTCGAAAACACTCTCCCAAAGATTGACCCTGCTTACTACGCTACTCAACTTTCCCAACTCTATGCCGGAGCAGTTCCTGGACTGCGAGGTCTTCCGCTACCACCTTCTTTTCCTTATTTTCTCCAACCTCCTTTTTTTCCCCCTACTACAGACTCCCCCGAAATGACAGAAATAATGCAGCGGATTCAAAAAGATATCATTCGAGGTCTCAGCATGTCTGGGGGGAGACTCGTCCCTAATGAGCAAGATATTCAACcgaaacaagagcctgaaccgGAAATCGAAGAGAAACCAGCACCGCTCGTAATTTCCCCTGCACCATCACCTCACTCCGAATCTCCGCGGCCAATGTCCAACAACAGTATCGGTCCGCAGACTGATTCCGTCAAAATGGTAATTAAGAATGGCGTTCTCATACCGAAGCAGAAACAGAGGCGCTACCGTACAGAGAGACCATTTTCCTGCTCCCAATGCTCAGCTAGATTCACTCTCCGTTCGAATATGGAACGTCACGTGAAGCAGCAACATCCTCAACACTGGAGTGTGAGGCGGCCAGCACCCAGGGCGCCTCCGCCATACCCATCATCCGACGCTCTAACTGACCGCGTAAAGTTCGCGTTACTTGCCCGTCATCTTGAAAGACCACTTCAGCAGTCAGAGCGTTCACCAATCCGTCGCGACTCCGATGAAGTCGCTGACAACGAGGAAGATGAAGATGATGCTCTGGTCATTGACGAGGAACCTGAACTGGAGCCAGAAGAACACCCAGCCGCCAAACGAGCTGCAGCAGAAATCCTCATGGCTACATGCCAGCAGGAAATGAACAAGGACTTTGATCTCAAGATCGCTGGCAATCTCATCAACAAGCCAGTTACAGAGAAGATTGAAACTGGAACGGATCCTATTCCGTTGATGCAGGAGCCTCTGCCGGTTCCTGTGGTGCCGACCAGGAGCGATGAGGAGGAGGATGAAGAAGGATTGGTTGCGTCTACCAGTGAGGGCAACAATTCTGGAAGCGATGAGAATAAATCGGAATCCGACAATGGAACACAGCCACCAAAGAAGCGATCAGCTTACAGCCTAGCCCCGAACCGGGTCTCCTGCCCTTACTGCCACCGAAAGTTCCCGTGGTCCTCATCACTACGCCGCCACGTTCTCACCCATACCGGCCAGAAGCCTTTCAAATGCCCGCACTGCCCCTTACTGTTCACCACCAAGTCTAACTGCGACAGACATTTGCTAAGAAAACATGGTGGTTCCGCTCGGGCGATACTAGCCGAACCGATACCTGAAACAGTAACCCCGCAGCCAGCGAATGACCTCCGAAACGTGCCAGAAAGACCATTCAAATGCGGGACCTGTCCTACCAGCACCTTCTCCACAATGGACACATTGAAGAAGCATATCACCTCACGCCATGGCTCTGGGGAGTCCCAGCCTAGCTCGCCAAACCCAGACAGTCACGATGAAGCCTTAGATGGCCTGGTCTTTAAATGCCATCTCTGTGAGGCGGCGTACCCCGATCGGGGAGGGACGCTGAACCACCTGGCTAATGTGCACGCAACTGAATACGAACACCTGGTCAGCAAGGGTGCGTTGGACGCTGCCAGCGATAAGAGTGAGaacactgatgatgatgataggggGAAATTTCCTGATCATGCTAACAGAAAGGTGGTATGTGCATTCTGCGTCCGCCGCTTCTGGTCTGCGGAGGATCTGCGACGTCACATGCGCACGCACTCAGGCGAGAGGCCGTTTGCCTGTGACCTGTGCAGGCGCCGCTTTACACTAAAACATAGCATGCTGCGTCACCGCAAGAAGCATCGGGAGGAGATCACTGATGATGAAGAGGCTTCTCCGAACACCCCTGACGAGAAAGTTAATGGCTACCGTTTCCAAGACGACGATTCAGGCAACGAGATACCAAACAACGTGAACAACAACAACTCTCCCCCAGCGGCTCCTTATGACAAAAAACTGAAGCTCGATATGACCTCTCGCAAATATTCCTCGGAAGAAAACGATGGGGAGAACGGAAGCGACCTTATTGGCAAACTGCTCGGAATCCCCGACAAAACTATCAACAAACTGCTGTCTTCAGCAGATGAGGCTGCAAAAATACTGGGTGTGAATAAATGA
- Protein Sequence
- MQGAAGVPAAPASEPPTSQQIKTEEVCKAKIEAEEMERMIVERQEFRGTRTTSIDSDNCSDRSEEDECRRARKRAASSPSPIPMDKRIARFECPKCHQRFDSVNSFEMHRFTVHGDDSRSGYDDLVDFSNKKFPEITRGLHNFRCDYCMRDFINAQVLDIHRKTCSPTNRIPTPDRDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFEDGHISNGIRHIDAARDLADIQSILNVTSTGSLLERLTGTRVNLESSVLTPPDTIAKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEPIPDLAPLPPREPEPPVPRINVKSIGQLTQIPEFRVPELSFKNNDIKPEVYEEDAPVDLSTGDNNNCDVLDLSKKKRDSDNEEPKTPTPSRPAFEPDAASVAATAFEKTRLLLAQQRLFENTLPKIDPAYYATQLSQLYAGAVPGLRGLPLPPSFPYFLQPPFFPPTTDSPEMTEIMQRIQKDIIRGLSMSGGRLVPNEQDIQPKQEPEPEIEEKPAPLVISPAPSPHSESPRPMSNNSIGPQTDSVKMVIKNGVLIPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDALTDRVKFALLARHLERPLQQSERSPIRRDSDEVADNEEDEDDALVIDEEPELEPEEHPAAKRAAAEILMATCQQEMNKDFDLKIAGNLINKPVTEKIETGTDPIPLMQEPLPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDNGTQPPKKRSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPETVTPQPANDLRNVPERPFKCGTCPTSTFSTMDTLKKHITSRHGSGESQPSSPNPDSHDEALDGLVFKCHLCEAAYPDRGGTLNHLANVHATEYEHLVSKGALDAASDKSENTDDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEEASPNTPDEKVNGYRFQDDDSGNEIPNNVNNNNSPPAAPYDKKLKLDMTSRKYSSEENDGENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00661758;
- 90% Identity
- -
- 80% Identity
- -