Basic Information

Insect: Colostygia pectinataria
Gene Symbol: RREB1
Assembly: GCA_951394395.1
Location: OX596370.1:4273162-4287946[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.36 21 6.2 3.6 1 23 91 114 91 114 0.94

2 11 0.025 1.5 9.9 0.1 1 23 291 313 291 313 0.97

3 11 0.0014 0.078 13.9 0.4 1 23 322 344 322 344 0.99

4 11 0.00084 0.048 14.5 2.0 1 23 350 373 350 373 0.97

5 11 0.0034 0.2 12.6 1.6 1 23 725 748 725 748 0.96

6 11 0.00063 0.036 14.9 1.4 2 23 938 959 937 959 0.97

7 11 0.029 1.7 9.7 5.3 1 23 965 988 965 988 0.97

8 11 0.12 6.9 7.7 1.2 1 23 1021 1045 1021 1045 0.93

9 11 0.55 32 5.7 0.7 1 23 1069 1092 1069 1092 0.93

10 11 0.0021 0.12 13.3 0.2 2 23 1132 1153 1131 1153 0.96

11 11 0.032 1.9 9.5 5.3 1 23 1159 1181 1159 1181 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.36	21	6.2	3.6	1	23	91	114	91	114	0.94
2	11	0.025	1.5	9.9	0.1	1	23	291	313	291	313	0.97
3	11	0.0014	0.078	13.9	0.4	1	23	322	344	322	344	0.99
4	11	0.00084	0.048	14.5	2.0	1	23	350	373	350	373	0.97
5	11	0.0034	0.2	12.6	1.6	1	23	725	748	725	748	0.96
6	11	0.00063	0.036	14.9	1.4	2	23	938	959	937	959	0.97
7	11	0.029	1.7	9.7	5.3	1	23	965	988	965	988	0.97
8	11	0.12	6.9	7.7	1.2	1	23	1021	1045	1021	1045	0.93
9	11	0.55	32	5.7	0.7	1	23	1069	1092	1069	1092	0.93
10	11	0.0021	0.12	13.3	0.2	2	23	1132	1153	1131	1153	0.96
11	11	0.032	1.9	9.5	5.3	1	23	1159	1181	1159	1181	0.97

Sequence Information

Coding Sequence: ATGCAGGGTGCTGCAGGTGTGGCCGCGACCCCCGCAGCCGACCCATCGCCTTCGCAACAAATCAAAACAGAGGAGGTCTGCGAGGCTAAAACCGAGGCCGAGGAAATGGAAAGGATGATTATCGAACGCCAGGAGTTGAGAGGCACTCGGACTACGAGCATCGACAGCGACAACTGCTCCGATAGAAGCGAGGATGACTGCCGGAGGGCCAGAAAACGGGCAGCGTCCACCTCCCCTTCACCTATCCCCATGGATAAGAGAATAGCGCGGTTCGAATGTCCCAAATGCCACCACCGATTTGACTCGGTCAACGCTTTCGACATGCATCGCTTCACCGTCCACGGAGATGACTCTCGCTCTGGCTACGATGAGCTCGTTGATTTCTCTAACAAAAAATTCCCTGAAATAACCCGCGGACTCCGCAACTTCAGATGCGATCTGTGCATGAGAGATTTCGGCAACGCACAAGTCTTGGATATCCACAGAAAAACTTGCTCTCCTTCGAACCGAATACCCACTCCTGACCGCGATCGCAGAGAAGACTTCTTCGCGAAACTCGACCTTAGGAACAGGTCGTTTGGAATTCCGGGCACGTTGACTCCCCCTATGGAAAGGTTCACGCCAAAGTTCGACGATGGACATATCGGTAACGGCTTACGGCACATGGACGCCGCCCGAGACTTGGCAGATATTCAATCGATACTCAACGTCACGTCAACGGGAAGCCTTTTAGAGAGACTTACTGGCACCAGAGTCAATTTAGAAAGTACCGTGCTGACGCCACCGGATACCATTGCGAAAGATCGTGACCAGGAAGAGACGCAAGATAACTTTGCCGCTGAGTTTAGACGAATGAAACTACGTGGTGAATTCCCTTGTAGGTTGTGCCCTGCTAAATTTCCAAATCTACGAGCCTTGAAGGGGCATAACAGAGTGCATCTTAGCGGTACCGGACCAGGCCCTTATCAATGCAACATGTGCCCTCATGCTTCATTGGACAAGGCAGCTTTGGTTAGGCACATGAGAACTCACAACGGTGACCGTCCTTACGAATGCGCTGTTTGCAACTACGCTTTTACTACCAAAGCAAACTGCGAGCGACACTTGAGAAACAGACACGCTAAAGTTACCCGAGAGGATGTAAAGCGCTCTATCATTTATCATCCTTCAGAAGATCCTAACAACGACGAAGTAAACTCTAAACTCGCTCGAGATGAGGTCAAAAGATCACTTGCTTTCCACTCTCCTCCTGAAATTGATAGACGCAATGAAAGCACTGGCCGCGATACCCCTGTTACGCATCATTATCCACCTAGCTACATCACCGAAAGACACCCCGTGGCTTGTTTGACATCAAAGCCAATACCTGACCTTGCCCCAATTCCACCTAGGGAACCAGAACCACCAGTGCCAAGAATCAATGTCAAAAGCATCGGCCAGCTGACGCAAATCCCAGAATTCAGAGTTCCAGATCTTTCGTTCAAAAACAACGATATCAAACCAGAAGTCTACGAAGAAGATACTCCAGTAGATCTAAGTACGAGCGATAATAATAACTGTGATGTTCTCGATCTCAGCAAGAAGAAGCGTGATAGTGACAACGAAGAACCGAAAGCTCTAGCACCTTTGCGGCCAGTTTTTGAACCCGATGCAGCAACCGTTACAGCTACAGCTTTTGAAAAGACGAAGTTACTGCTTGCCCAGCAGAGACTTTTTGGAAACTCTCTCCCAAAGATAGACCCGGCTTACTATGCCACTCAATTTTCTCAACTTTACGGTGGTGCAATACCTGGTCTGCACGGCCTACCTCTACCGCCTTCTTTTCCTTACTTTCTCCAGCCTTCTTTTTTTCCCCACCCTACCGACTCCCCCGAGATAACAGAAATAAAACAACGTATCCAGAAGGAAATCATTCGAGGTCTAAGCATGTCTGGTGGCGGACTAGTTCCTAGTGAGCAAGAAATTCAGCCTAAACAAGAACCAGAACCAGAGATTGAAGAAAAACCAACACCACTCGTGATCTCCCCTGTACCATCACCCCATCCAGAATCTCCAAGACCAATATCCAATAACAATAGTATGGTAACACAAACAGATTCAGTTAAAATGGTGATCAAGAACGGTGTTCTCATGCCTAAGCAGAAGCAAAGACGCTATCGCACTGAGCGACCTTTTTCCTGCTCGCAATGCTCGGCTAGATTCACTCTTCGATCCAACATGGAACGTCATGTGAAGCAGCAACACCCTCAGCACTGGAGCGTAAGACGACCAGCCCCAAGGGCCCCTCCGCCATATCCATCCTCTGACGCTTTAGCCGATCGCGTGAAGTTTGCATTACTGGCGCGACACCTTGAAAGGCCTATGCAGCAATCCGATCACTCCCCAATCCGCCGCGATTCTGACGAAGTTGCTGATAACGAGGAAGACGAAGACGATGCCTTGGTTATTGATGAAGAACCAGAATTAGAACCTGAAGAGCATTCAGCTGCCAAACGCGCCGCAGCAGAGATCCTAATGGCTACTTGCCAGCAGGAGTTGAATAAAGATTTTGATCTCAAAATTGCTGGTAATCTTATCAACAAGCCAGTTGATAAGACTGATGCAGGGACGGAACCTATTTCACTGATGCAAGAGCCCTTGCCTGTCCCAGTAGTGCCAACGCGAAGTGATGAGGAAGAAGATGAAGAAGGTTTGGTGGCCTCTACCAGTGAAGGCAACAATTCCGGAAGCGATGAGAACAAATCTGATGCCGACACTGGAACTCAGCCTCCTAAAAAGCGCTCTGCATACAGTCTAGCCCCAAACCGCGTCTCATGCCCGTACTGCCACCGGAAATTCCCATGGTCTTCATCACTACGCCGCCATGAGCTCACCCACACTGGACAGAAGCCTTTCAAGTGCCCGCATTGCCCTTTACTGTTCACGACCAAGTCTAATTGCGACAGACATTTGCTAAGAAAGCATGGTGGCTCAGCAAGGGCTATACTAGCCGAGCCCGTTTCTGAAGCTATATCACCACCGCAGCCTGTTAACGACATCCGAACAGTGCCAGAAAGACCTTTCAAATGCGGGACTTGCCCTACCAGCACCTTCTCATCCATGGAGACTTTGAAGAAGCACATATCATCTCGCCACGGTTCAGTAGAGTCCCGACCCAGCTCGCCCAACCCAGACAATCATGATGATGCCCTGGATGGTCTGGTCTTCAAGTGCCATCTCTGTGAAGCGGCTTACCATGACCGAAGTGGAGCTTTGAATCACCTAGCCAATGTGCACGCCACAGAGTACGAGCAGCTAGTCAGCAAGGGAGCCCTGGACGGTACGAGTGATAAAAGCGAGAACACTGATGATGACGACAGAGGGAAGTTCCCAGATCATGCTAATAGGAAGGTCGTCTGCGCGTTTTGCGTGCGACGTTTCTGGTCGGCAGAAGACCTGCGTCGCCACATGCGAACGCATTCCGGGGAGCGTCCATTCGCCTGCGACCTGTGCCGTCGCCGTTTCACACTGAAGCACAGCATGCTACGGCATCGCAAGAAGCACCGCGAGGAGatcactgatgatgatgaagcatcGCCGCCGAACACGCCCGAGGAGAAAATCAATGgATACCGCTTCCAAGACGACGATTCCGGCAACGAGATACCAAACAACGTGAACAATAACAACTCTCCCCCCGCCGTGCCTTACGAGAAGAAACTCAGACTAGACATGACCTCACGCAAATACTCCTCAGAAGAAAACGACGGAGAGAATGGCAGCGACCTAATCGGAAAACTCCTCGGAATTCCTGACAAGACGATCAATAAGCTTCTGTCGTCCGCAGACGAGGCAGCCAAAATACTGGGGGTGAATAAATGA
Protein Sequence: MQGAAGVAATPAADPSPSQQIKTEEVCEAKTEAEEMERMIIERQELRGTRTTSIDSDNCSDRSEDDCRRARKRAASTSPSPIPMDKRIARFECPKCHHRFDSVNAFDMHRFTVHGDDSRSGYDELVDFSNKKFPEITRGLRNFRCDLCMRDFGNAQVLDIHRKTCSPSNRIPTPDRDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDGHIGNGLRHMDAARDLADIQSILNVTSTGSLLERLTGTRVNLESTVLTPPDTIAKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHSPPEIDRRNESTGRDTPVTHHYPPSYITERHPVACLTSKPIPDLAPIPPREPEPPVPRINVKSIGQLTQIPEFRVPDLSFKNNDIKPEVYEEDTPVDLSTSDNNNCDVLDLSKKKRDSDNEEPKALAPLRPVFEPDAATVTATAFEKTKLLLAQQRLFGNSLPKIDPAYYATQFSQLYGGAIPGLHGLPLPPSFPYFLQPSFFPHPTDSPEITEIKQRIQKEIIRGLSMSGGGLVPSEQEIQPKQEPEPEIEEKPTPLVISPVPSPHPESPRPISNNNSMVTQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDALADRVKFALLARHLERPMQQSDHSPIRRDSDEVADNEEDEDDALVIDEEPELEPEEHSAAKRAAAEILMATCQQELNKDFDLKIAGNLINKPVDKTDAGTEPISLMQEPLPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSDADTGTQPPKKRSAYSLAPNRVSCPYCHRKFPWSSSLRRHELTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPVSEAISPPQPVNDIRTVPERPFKCGTCPTSTFSSMETLKKHISSRHGSVESRPSSPNPDNHDDALDGLVFKCHLCEAAYHDRSGALNHLANVHATEYEQLVSKGALDGTSDKSENTDDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDDEASPPNTPEEKINGYRFQDDDSGNEIPNNVNNNNSPPAVPYEKKLRLDMTSRKYSSEENDGENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00661758;
90% Identity: iTF_01170953;
80% Identity: -