Ibis007355.1
Basic Information
- Insect
- Idaea biselata
- Gene Symbol
- -
- Assembly
- GCA_958496205.1
- Location
- OY292395.1:30783012-30787587[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.096 7.1 8.0 1.7 1 23 95 118 95 118 0.96 2 12 0.78 57 5.2 0.2 1 22 150 171 150 171 0.88 3 12 0.024 1.8 9.9 0.1 1 23 298 320 298 320 0.97 4 12 0.0013 0.097 13.9 0.4 1 23 329 351 329 351 0.99 5 12 0.00081 0.06 14.5 2.0 1 23 357 380 357 380 0.97 6 12 0.0033 0.24 12.6 1.6 1 23 723 746 723 746 0.96 7 12 0.00027 0.02 16.0 1.3 2 23 941 962 940 962 0.97 8 12 0.028 2.1 9.7 5.3 1 23 968 991 968 991 0.97 9 12 0.087 6.4 8.1 1.5 1 23 1022 1046 1022 1046 0.93 10 12 0.18 14 7.1 0.1 1 23 1069 1092 1069 1092 0.89 11 12 0.002 0.15 13.3 0.2 2 23 1132 1153 1131 1153 0.96 12 12 0.018 1.3 10.3 4.9 1 23 1159 1181 1159 1181 0.97
Sequence Information
- Coding Sequence
- ATGAAAGCGCCCTGCGTTATTCAAACACGATCCGCAATCGATTGTAACGCGTTCTCTTTTGTTACAGAAATCAAAACAGAGGAGGTCATCAGCGAAGCTAAGGTTGACACGGAGGAGTTGGATAGAATGAAAACAGAAAGACAGGAGCTGAGAACACGTACGATGAGTATAGACAGCGATAACCAATCGGATCGCAGCGAGGAAGAGGACTCCCGGCGAGCACGCAAACGCGCCGCGTCCACCTCGCCTAGCCCCGCCCCGCTCGACAAGAAGCTCGCTCGCTTCGAGTGCTACAAGTGCCATGAGCAATTTGAAACCGTCAACGCCTTCGAGATCCACCGGTTCACCGCCCACGGAGATGAAGCCCGCTCAGGGTACGAAGATCTTGTCGATTTTTCTAATAAGAAGTTTCCAGAAATAACTCGTGGACTCGAGCGAGGGCATAACTTTAAGTGCGAACTCTGCACAAGAGATTTTCCCAACGTACAAGTTCTGGACTTACATAGAAAAACATGCAGCCCTTCTAATAGAATACCGACCCCAGAGAGGGATCGTAGAGAAGATTTCTTCGCGAAGTTGGATCTAAGAAATAGGACTTTTGGTATTCCTGGCACATTAACACCACCTATGGAAAGGTACACGCCTAAGTTTGACGATGCACATATCGGGAACGGAATTAGACATATCGACGCAGCTCGAGACTTGGCAGACATTCAATCGATATTAAATGTCACGTCTACGAGTAGCCTTTTAGAGAGACTTACTGGCACCAGGGTCGCTTTAGAAAGTACAGTACTTACTCCTCCTGATACCATCGGAAAAGAACGCGAAGAAGAAGCGACACAAGATAACTTCGCAGCGGAATTTAGGAGAATGAAACTACGTGGTGAATTCCCTTGCAGACTATGTCCTGCGAAGTTTCCTAACCTTCGAGCTTTGAAAGGACATAATAGAGTACATCTGAGTGGAACTGGACCTGGACCTTATCAGTGCAATATGTGTCCACATGCATCTCTTGATAAAGCTGCTTTAGTCAGGCACATGAGAACCCACAACGGAGATAGGCCATACGAATGTGCAGTGTGCAATTATGCCTTTACAACAAAAGCTAATTGTGAACGCCATTTAAGAAACAGACATGCTAAAGTTACCCGAGAAGATGTAAAGCGGTCTATTATTTACCATCCTTCTGAAGATCCCCTCAACGATGAAGTTAATTCAAAACTCGCTCGAGAAGAAGTAAAAAGATCACTTGCGTTCCATTCTCCTCCAGAAGTTGATAGACGAAGTGATAGCACCGGACGAGACACCCCTCTCACTCATTTTAACCCTAATTTCATAACCGACAGACATCCTGTGGCATCATTGACTGTTAAACCTGTCATCCCCGAAGGTCCTCTCACTCCAAGGGGATCAGAGCAAAATGTCCCCAGAATAAAAGTAAAAGGCATAGGTCAGTTGACACAAATACCTGAATTCAGGCTGCCAGAAATCGCGTTTAAAACTAACGATGTTCAACCTGAAGTCTACGATGAAGAAACACCGGTAGATTTGAGTACAAGCGACAACAATAACAGTTGCGATGTCCTCGATCTCAGCAAAAAGAAACGTGACAGTGATGTTGATGAACCAAAAGCCCCACCGCGCCCAACATTCGAACCTGACCCCGCAACAGTAGCTGCATCTGCTTACGAGAAAACCAGATTTCTGCTCGCTCAACAAAGGCTTTTCGAAAGCTCTCTTCCTAAAATCGATCCCGCCTACTACGCATCCCTTTACGCCGGGGCAGTACCAGGACTGCCTAGTCTGCCTTTACCTCCGTCCTTTCCTTACTTTCTTCAACCCTCTTTTTTTCCTCACCCAAATGACTCCCAAGAACTCGCAGAAATAAAGCAGCGCATCCAGAAAGAAATAATTCGCGGCCTTAGCATGTCTGGTGGTAGACTGGTTCCCAACGAACAAGATCCTCAACCAAAGCAAGAGCCAGAACCGGAGGAAGAGAAACCAATTCCTCAAGTCTTATCTCCTGTCCCATCGCCACACCCTGAGTCTCCACGGCCAGTCTCAAACAACTTGGTTCCGCAAACTGATTCCGTGAAGATGGTCATAAAAAACGGTGTTCTTATGCCGAAGCAGAAACAGAGGCGTTATCGTACTGAAAGACCGTTTTCCTGCTCTCAATGCTCAGCTCGGTTCACTCTTCGCTCAAATATGGAACGACACGTGAAACAGCAACATCCTCAACATTGGAGTGTAAGACGACCGGCCCCGAGAGCCCCGCCTCCTTACCCAACTTCTGATACTTTAGCCGATCGCGTAAAATTTGCTCTCTTAGCACGCCATCTAGAACGGCCACTACAGCAATCTGATAGGTCTCCTATCCGACGTGACTCTGATGAAGTTGCCGACAATGAAGAAGACGAGGATGACGCTTTAATTATAGATGAAGAACCAGAACTCGATCAGAACCTGGAAGATCATACAGCAGCTAAGCGTGCAGCTGCTGAAATACTGATGGCTACTTGCCAACAAGAACTGAATAAGGACTTTGATCTCAAAATTGCGGGCAATCTTATCAACAAGCCCTTGTCTATTGCCGCTCCTAAAAATGGCGGTACGGATGCGATCCCACTAACTACCGAGCCTTTGCCGGTTCCTGTTGTACCGACTCGTAGTGATGAGGAAGAAGACGAAGAAGGACTCGTTGCTTCCACAAGCGAGGGCAATAACTCGGGAAGCgatgaaaataaATCTGAATCCGACACCGGTACTCAACCTCCAAAGAAGAAGTCTGCGTACAGTCTGGCCCCAAACCGAGTATCTTGTCCATACTGCCACCGAAAGTTCCCCTGGTCTTCATCTTTACGTCGCCATGTCCTGACACATACAGGACAGAAACCGTTCAAGTGTCCCCACTGCCCTCTGCTTTTCACCACCAAGTCCAACTGCGATCGTCACTTACTACGCAAACATGGGGGATCAGCGCGAGCCATATTAGCTGAACCCATCTCAGAATCAGTTCCACCACCGAATAACGACGTAAGAACAGTGCCGGAAAGACCATTCAAATGCGCCACTTGTCCTACTAGCACTTTCTCATCAATGGAAACTTTGAAGAAGCATATGTCTTCACGGCATGGATCTGAGTCCCAGCCAGGGTCGCCAAACCCTGAGAATCATGAGGATAACTGCGAGGGGCTGGTGTTCAAGTGTCACCTGTGCGAAGCTTCGTTTGGAGATCGCGCTGGAGCTCTGAACCACTTGGCTGGCGTCCACGCATCTGAATACGAGCAGCTTGTTGGGAAAGGAGCTTTGGATGCTGCCAGTGATAGGAGCGATAGTGCTGAAGATGATGAGAGAGGGAAATTTCCTGATCACGCTAATAGAAAGGTGGTTTGCGCATTTTGCGTGCGTCGTTTCTGGTCAGCTGAAGACTTGCGGCGTCACATGCGGACCCACTCCGGGGAGCGGCCGTTCGCCTGCGACCTGTGCAGTCGACGGTTCACCCTCAAACACAGCATGCTGCGGCACAGGAAGAAGCATAGGGAAGAAACTGACGAGGATGAACCTCTGCATGTCACTGATAAAGTTAATGGATACTACCATGACGAAGACTCTGGCAACGAGATCCAAAGCAACGTCAACAACAACAACTCCCCGCCTTCAGTGCCCTACGAAAAGCGGATTAAACTAGACATGACATCGCGGAAATACTCCTCCGAAGAAAACGACGGCGACGGCAGTGATCTCATTGGAAAACTACTCGGCATTCCAGACAAGACCATAAACAAGCTGTTATCGTCAGCTGATGAAGCAGCCAAGATCTTGGGGGTCAATAAATGA
- Protein Sequence
- MKAPCVIQTRSAIDCNAFSFVTEIKTEEVISEAKVDTEELDRMKTERQELRTRTMSIDSDNQSDRSEEEDSRRARKRAASTSPSPAPLDKKLARFECYKCHEQFETVNAFEIHRFTAHGDEARSGYEDLVDFSNKKFPEITRGLERGHNFKCELCTRDFPNVQVLDLHRKTCSPSNRIPTPERDRREDFFAKLDLRNRTFGIPGTLTPPMERYTPKFDDAHIGNGIRHIDAARDLADIQSILNVTSTSSLLERLTGTRVALESTVLTPPDTIGKEREEEATQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPLNDEVNSKLAREEVKRSLAFHSPPEVDRRSDSTGRDTPLTHFNPNFITDRHPVASLTVKPVIPEGPLTPRGSEQNVPRIKVKGIGQLTQIPEFRLPEIAFKTNDVQPEVYDEETPVDLSTSDNNNSCDVLDLSKKKRDSDVDEPKAPPRPTFEPDPATVAASAYEKTRFLLAQQRLFESSLPKIDPAYYASLYAGAVPGLPSLPLPPSFPYFLQPSFFPHPNDSQELAEIKQRIQKEIIRGLSMSGGRLVPNEQDPQPKQEPEPEEEKPIPQVLSPVPSPHPESPRPVSNNLVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTSDTLADRVKFALLARHLERPLQQSDRSPIRRDSDEVADNEEDEDDALIIDEEPELDQNLEDHTAAKRAAAEILMATCQQELNKDFDLKIAGNLINKPLSIAAPKNGGTDAIPLTTEPLPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPISESVPPPNNDVRTVPERPFKCATCPTSTFSSMETLKKHMSSRHGSESQPGSPNPENHEDNCEGLVFKCHLCEASFGDRAGALNHLAGVHASEYEQLVGKGALDAASDRSDSAEDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCSRRFTLKHSMLRHRKKHREETDEDEPLHVTDKVNGYYHDEDSGNEIQSNVNNNNSPPSVPYEKRIKLDMTSRKYSSEENDGDGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00661758;
- 90% Identity
- iTF_00835008; iTF_00837908; iTF_00836928;
- 80% Identity
- -