Basic Information

Insect: Perizoma flavofasciatum
Gene Symbol: RREB1
Assembly: GCA_958496245.1
Location: OY292443.1:4538430-4553220[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.066 4 8.5 1.9 1 23 93 116 93 116 0.94

2 12 5 3.1e+02 2.5 0.1 1 22 145 166 145 166 0.93

3 12 0.023 1.4 9.9 0.1 1 23 293 315 293 315 0.97

4 12 0.0013 0.077 13.9 0.4 1 23 324 346 324 346 0.99

5 12 0.00077 0.047 14.5 2.0 1 23 352 375 352 375 0.97

6 12 0.0031 0.19 12.6 1.6 1 23 726 749 726 749 0.96

7 12 0.00026 0.016 16.0 1.3 2 23 940 961 939 961 0.97

8 12 0.027 1.6 9.7 5.3 1 23 967 990 967 990 0.97

9 12 0.054 3.3 8.7 1.3 1 23 1023 1047 1023 1047 0.93

10 12 0.45 27 5.8 1.2 1 23 1071 1094 1071 1094 0.95

11 12 0.0019 0.12 13.3 0.2 2 23 1134 1155 1133 1155 0.96

12 12 0.03 1.8 9.5 5.3 1 23 1161 1183 1161 1183 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.066	4	8.5	1.9	1	23	93	116	93	116	0.94
2	12	5	3.1e+02	2.5	0.1	1	22	145	166	145	166	0.93
3	12	0.023	1.4	9.9	0.1	1	23	293	315	293	315	0.97
4	12	0.0013	0.077	13.9	0.4	1	23	324	346	324	346	0.99
5	12	0.00077	0.047	14.5	2.0	1	23	352	375	352	375	0.97
6	12	0.0031	0.19	12.6	1.6	1	23	726	749	726	749	0.96
7	12	0.00026	0.016	16.0	1.3	2	23	940	961	939	961	0.97
8	12	0.027	1.6	9.7	5.3	1	23	967	990	967	990	0.97
9	12	0.054	3.3	8.7	1.3	1	23	1023	1047	1023	1047	0.93
10	12	0.45	27	5.8	1.2	1	23	1071	1094	1071	1094	0.95
11	12	0.0019	0.12	13.3	0.2	2	23	1134	1155	1133	1155	0.96
12	12	0.03	1.8	9.5	5.3	1	23	1161	1183	1161	1183	0.97

Sequence Information

Coding Sequence: ATGCAAGGCGCTGCCAGCGTATCCACGGCGGCCCCCGCGTCCGCTCCACCGTCTTCCCAACAAATCAAAACAGAAGAGGTCTGCCTGGCTACAATTGAAGCCGAGGAAATGGAAAGGATGATTATCGAACGCCAAGAGTTGAGGGGCACTCGGACCACAAGCATCGACAGTGACAACCGCTCCGATAGAAGCGAGGAAGATGACTGCCGGAGAGCTAGAAAACGGGCAGCGTCGACCTCACCTTCCCGCATCCCCATGGACAAAAGAATCGCGCGGTTCGAATGCCCAAAATGCCACCAAAGATTCGACTCAGTCAACGCATTCGATATGCATCGCTTTACAGTCCACGGCGACGACTCCCGCTCCGGCTACGACGATCTCGTCGATTTCTCCAACAAAAAGTTCCCGGATATCAGCCGCGGACTCCACAACTTCAGATGCGAGCTGTGCATGAGAGACTTCATCAACGCACAAGTCCTAGATATCCACAGAAAGACGTGCTCACCTACCAACAGAATACCCACTCCCGACCGCGATCGCAGAGAAGATTTCTTCGCTAAATTGGACCTAAGGAATAGGTCGTTCGGCATTCCAGGCACGTTGACTCCCCCTATGGAAAGGTTCACGCCAAAGTTCGACGATGGACATATCAGTAACGGCATACGGCACATCGACGCCGCCCGAGACTTGGCAGATATTCAATCGATACTCAACGTCACGTCAACGGGAAGCCTTTTAGAGAGACTCACTGGCACCAGAGTTAATTTAGAAAGTTCCGTACTGACGCCACCGGACACTATTGCGAAAGATCGTGACCAGGAGGAGACGCAGGACAACTTTGCTGCTGAGTTTAGACGAATGAAGCTACGCGGTGAGTTCCCTTGCAGATTATGCCCTGCTAAATTCCCGAATCTACGAGCCTTGAAGGGACATAACAGAGTGCACCTTAGCGGTACAGGACCTGGTCCTTATCAATGCAATATGTGCCCTCATGCTTCATTGGATAAGGCAGCATTGGTCAGGCATATGAGAACCCACAACGGCGACCGTCCTTACGAATGCGCTGTTTGCAACTACGCATTTACTACTAAAGCCAATTGCGAAAGACATTTGAGAAATAGACACGCTAAAGTCACCCGCGAGGATGTGAAGCGCTCTATAATTTACCATCCTTCAGAAGACCCTAACAACGACGAAGTCAACTCTAAACTCGCTCGAGATGAGGTCAAGAGGTCGCTCGCTTTCCACTCTCCCCCTGAAACCGATAGGCGCAATGAGAGTTCAGGCCGCGATACACCTGTGACGCATCACTTTTCGCCTGGCTTCATAACTGATAGACACCCGGTCGCTTCGCTTACATCAAAACCAATACCTGACTTAGCCCCACTTCCTTTGAGAGAACCAGAACCATCTGTACCGAGAATCAACGTCAAAAGTATCGGGCAGCTGACGCAAATCCCAGAATTCAGAGTTCCAGAACTTTCATTTAAAAACAACGATATTAAGCCGGAAGTCTATGAAGAGGATGCCCCAGTAGATTTGAGCACAAGCGATAATAACAACTGTGATGTCCTTGATCTCAGCAAGAAGAGGCGCAACAGTGAAAATGATGAACCAATAACTCGAACTCCGCCACGCCCAGCATTTGAACCCGATGCAGCAACGGTTGCAGCAACAGCTTTTGAAAAGACGAGGTTACTACTCGCTCAGCAGAGACTTTTTGAAAACTCACTCCCAAAGATCGATCCTGCCTACTATGCCACTCAACTCTCCCAACTCTACGCCGGAGCAGTACCTGGACTTCACGGTCTTCCTTTGCCGCCTTCGTTTCCTTATTTTCTCCAACCTTCTTTTTTCCCCCACCCTACCGACTCTCCCGAAATGACTGAAATAAAGCAGCGTATTCAAAAGGAAATCATTAGAGGTCTCAGTATGTCTGGTGGGAGACTCGTCCCTAATGAGCAGGAAATTCAGCCAAAACAGGAGCCTGAACCAGAGATCGAAGAGAAGCCAGCGCCACTCGTGATTTCACCTGTACCATCACCACACTCGGAATCACCTCGACCAATGTCCAACAACAGCATGGGACCGCAGACAGATTCTGTCAAAATGGTAATCAAGAACGGTGTTCTGATGCCAAAGCAGAAACAAAGGCGTTACCGTACTGAGAGACCTTTTTCCTGCTCTCAATGCTCCGCTCGATTCACTCTCCGCTCGAATATGGAACGCCACGTTAAGCAGCAACATCCTCAACACTGGAGTGTAAGGCGACCAGCTCCTAGGGCACCTCCACCATACCCTTCTTCAGACGCTCTAGCTGATCGTGTCAAGTATGCTTTATTAGCCCGCCACCTTGAAAGACCACAGCAACAATCAGAGCACTCACCAATCCGTCGTGACTCTGACGAAGTAGCTGACAACGAGGAAGACGAAGAGGATGCATTGGTAATCGATGAAGAACCAGAGTTAGAGCCAGAAGAACATCCAGCAGCAAAACGAGCAGCTGCAGAAATCCTAATGGCTACTTGTCAGCAGGAGATGAACAAGGACTTTGATCTCAAAATCGCGGGCAATCTCATCAACAAGCCAGTTACAGACCAGGTTGAAACTGGCACGGAGCCTATTCCACTGATGCAGGAGCTGCTGCCTGTTCCCGTGGTGCCGACGAGAAGCGATGaagaagaagatgaagaaggaTTGGTTGCTTCCACCAGTGAAGGCAACAACTCTGGAAGTGATGagaataaATCGGAATCCGACACCGGAACACAGCCACCAAAGAAGCGTTCAGCTTACAGCCTAGCCCCCAACCGCGTATCCTGCCCTTATTGCCACCGAAAGTTCCCCTGGTCCTCATCATTACGTCGCCATGTCTTAACTCACACTGGACAAAAACCCTTCAAATGCCCGCACTGCCCTCTGCTGTTCACCACCAAGTCTAACTGTGACAGACACTTGCTGAGAAAGCATGGTGGCTCTGCACGGGCAATACTTGCCGAGCCGGTTCCTGAGGCAGTTTCCCCACCGCAACCAGCTAACGACGTCAGAACTGTTCCAGAACGACCATTTAAATGTGGCACCTGCCCTACCAGCACTTTCTCCACAATGGATACCTTGAAGAAGCACATCTCTTCCCGCCATGGTTCAGGAGAGTCCCAGCCCAGCTCGCCGAACCCGGACAGTCATGATGAAACCCTGGACGGTCTAGTCTTCAAGTGCCATCTCTGTGAAGCGGCTTACCATGATCGAAGTGGGACTTTGAACCATCTGGCCAGTGTGCACACAACGGAGTACGAACATCTGGTTAGCAAGGGAGCCTTAGACGCTACGAGTGACAAGAGCGAGAATACAGATGACGACGACAGAGGGAAGTTTCCAGATCATGCTAATAGAAAGGTGGTATGCGCATTTTGCGTCCGTCGTTTCTGGTCCGCTGAGGATTTGCGTCGTCATATGCGAACTCACTCAGGCGAGCGCCCCTTTGCCTGCGACCTGTGTCGTCGCCGCTTCACGCTGAAGCACAGCATGCTTCGCCACCGCAAGAAGCATAGAGAGGAAACTGATGATGAAGAGGCTTCGCCGAGCGCGCCTGACGACAAAATCAACGGCTACCGCTTTCAAGACGACGATTCCGGCAACGAGATCCCAAACAACGTGAACAATAACAACTCTCCCCCAGCCGCGCCATACGAGAAGAAACTCAAACTGGACATGACATCTCGCAAGTACTCCTCGGAAGAAAATGACGGAGAGAACGGCAGCGACCTCATTGGGAAACTGCTGGGAATCCCTGACAAGACAATCAATAAACTGTTGTCTTCAGCAGACGAGGCAGCCAAGATACTGGGTGTGAATAAATGA
Protein Sequence: MQGAASVSTAAPASAPPSSQQIKTEEVCLATIEAEEMERMIIERQELRGTRTTSIDSDNRSDRSEEDDCRRARKRAASTSPSRIPMDKRIARFECPKCHQRFDSVNAFDMHRFTVHGDDSRSGYDDLVDFSNKKFPDISRGLHNFRCELCMRDFINAQVLDIHRKTCSPTNRIPTPDRDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDGHISNGIRHIDAARDLADIQSILNVTSTGSLLERLTGTRVNLESSVLTPPDTIAKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHSPPETDRRNESSGRDTPVTHHFSPGFITDRHPVASLTSKPIPDLAPLPLREPEPSVPRINVKSIGQLTQIPEFRVPELSFKNNDIKPEVYEEDAPVDLSTSDNNNCDVLDLSKKRRNSENDEPITRTPPRPAFEPDAATVAATAFEKTRLLLAQQRLFENSLPKIDPAYYATQLSQLYAGAVPGLHGLPLPPSFPYFLQPSFFPHPTDSPEMTEIKQRIQKEIIRGLSMSGGRLVPNEQEIQPKQEPEPEIEEKPAPLVISPVPSPHSESPRPMSNNSMGPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDALADRVKYALLARHLERPQQQSEHSPIRRDSDEVADNEEDEEDALVIDEEPELEPEEHPAAKRAAAEILMATCQQEMNKDFDLKIAGNLINKPVTDQVETGTEPIPLMQELLPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKRSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPVPEAVSPPQPANDVRTVPERPFKCGTCPTSTFSTMDTLKKHISSRHGSGESQPSSPNPDSHDETLDGLVFKCHLCEAAYHDRSGTLNHLASVHTTEYEHLVSKGALDATSDKSENTDDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREETDDEEASPSAPDDKINGYRFQDDDSGNEIPNNVNNNNSPPAAPYEKKLKLDMTSRKYSSEENDGENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00661758;
90% Identity: iTF_01170953;
80% Identity: -