Obrm002818.1
Basic Information
- Insect
- Operophtera brumata
- Gene Symbol
- RREB1
- Assembly
- GCA_001266575.1
- Location
- JTDY01000540.1:40260-46930[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.13 8 7.1 0.8 1 23 75 98 75 98 0.94 2 12 3.1 2e+02 2.7 0.1 1 22 127 148 127 148 0.93 3 12 0.016 0.99 9.9 0.1 1 23 275 297 275 297 0.97 4 12 0.00084 0.053 13.9 0.4 1 23 306 328 306 328 0.99 5 12 0.00052 0.033 14.6 2.0 1 23 334 357 334 357 0.97 6 12 0.0021 0.13 12.7 1.6 1 23 702 725 702 725 0.96 7 12 0.00017 0.011 16.1 1.3 2 23 899 920 898 920 0.97 8 12 0.018 1.1 9.7 5.3 1 23 926 949 926 949 0.97 9 12 0.026 1.6 9.2 1.2 1 23 982 1006 982 1006 0.94 10 12 0.68 43 4.8 1.7 1 23 1030 1053 1030 1053 0.93 11 12 0.0013 0.082 13.3 0.2 2 23 1093 1114 1092 1114 0.96 12 12 0.02 1.3 9.6 5.3 1 23 1120 1142 1120 1142 0.97
Sequence Information
- Coding Sequence
- ATGCTGATAGAAATCAAAACAGAGGAAGGCGCGGCTAAATTCGAAGCTGAGGAAATGGAAAGGATGATTATCGAACGCCAGGAGTTGAGGGGCACTCGTACCACGAGCATCGATAGCGACAACCGCTCCGATCGAAGTGAGGAGGATGATTGCCGGAGAGCCAGAAAACGGGCAGCGTCTACCTCCCCTTCGCCCATCCCCATGGACAAGAGAATCGCGCTGTTTGAATGCCCAAAATGCTACCAAAGATTCGAGTCAGTCAACGCGTTCGACATGCATCGCTTCACCGTCCACGGAGACGACTCTCGCTCCGGCTACGACGATCTCATCGATTTCTCCAACAAAAAGTTCCCGGAAATCACCCGCGGACTCAACAACTTCAGATGCGATCTGTGCATGAGAGACTTTATAAACGCAAATGTTCTGGACATCCACAGAAAGACGTGCTCCCCATCGAACAGAATACCCACCCCCAACCGCGATAACAGAGAACACTTTTTCGCGAAACTGGACCTTAGGAACAGTTCGTTTGCTATTCCAGGCACGTTGACTCCCCCTATGGAAAGGTTCACGCCAAAGTTCGACGATGGTCATATCACTAACGGCATACGGCAAATTGACGGCACCCGTGACTTGGCGGATATTCAATCGATGCTCAATGTTACGTCAACGGGAAGCCTTTTAGAGAGACTAACTGGCACCAGAGTCAGTTTAGAAAGTTCCGTGCTGACGCCACCGGACACTATTGCAAAAGATCGTGACCAGGAAGAGACGCAGGATAACTTTGCTGCGGAATTTCGACGGATGAAACTACGTGGTGAATTTCCTTGCAGATTATGTCCTGCCAAATTCCCGAATCTACGAGCTTTGAAAGGTCATAACAGAGTGCACTTAAGTGGAACAGGACCCGGCCCTTATCAATGCAACATGTGCCCTCATGCTTCATTGGACAAAGCAGCTTTGGTCAGACACATGAGAACTCACAATGGCGACCGTCCTTACGAATGTGCTGTTTGCAACTACGCCTTTACTACTAAGGCCAATTGCGAACGACACTTGAGAAACAGACACGCTAAAGTCACCCGAGAAGATGTGAAGCGTTCTATCATTTACCATCCTTCAGAAGATCCTAACAACGACGAAGTCAACACCAAACTTGCCCGAGATGAAGTGAAGAGATCACTCTCTTTCCATTCTCCCCCTGAAATTGACAGGCGAAATGAAATCACTGGCCGCGACACTCCTGTGACGCATCATTTCTCGCCCAACTTTATAACCGATAGACACCCAGTGGCTTCGCTGACGTCAAAACGAATACCCGACCTGGCTCCGCTTCCTCCAAGGGAACTAGAACAATCTGTACCAAGAATCAATGTTAAAAGCATTGGACAGCTGACGCAAATCCCAGAATTTAGAGTGCCAGATCGTTCGTTCAAGAACAACGATATCAAGCCTGAAGTATATGAAGAGGAGACTCCAGTAGATCTAAGCACAAGCGATAACAACTGTGATGTCCTAGATCTTAGCAAGAAGAAGCGTGACAGTGACAACGAAGAACCAAAAGCTCCAACTCCGTCACGGCCAGCTTTCGAACCAGATGCAGTTTCAGTTGCGGCTACAGCTTTTGAAAAGACGAGGCTCTTGCTTGCCCAGCAGAGACTTTTTGAAAACTCTCTCCCAAAGATCGATCCTGCTTACTATGCCACTCAACTTTCCCAACTCTATGCCGGAGCTTTACCTGGATTACACGGTCTTCCCTTGCCTCCTTCTTTTCCTTATTTTCTCcaaccttcttttttttcccACCCGGACTCCCCTGAGATgacagaaataaaacaaataattcgtGGTCTCAGCATGTCTGGTGGAAGACTCCTCCCTAATGAGCAGGAGATTCAACCCAAGCAAGAGCCAGAACCGGAGATCGAAGAGAAGCCAGTACCACTCGTAATTTCCCCTGTACCGTCACCCCACTCAGAATCTCCACGGCTGATATCCAACAACACTAGCTTGGTACCACAAACAGACTCTGTCAAAATGGTAATTAAGAACGGCATTCTCATGCCAAAGCAAAAACAAAGACGTTACCGTACCGAAAGACCCTTTTCCTGCTCTCAATGTTCGGCCAGATTTACCCTTCGATCCAACATGGAACGTCACGTAAAGCAGCAACATCCTCAACACTGGAGTGTGAGGCGACCTGCTCCTAGGGCTCCTCCGCCTTACCCTTCATCTGATGCTTTAGTTGATCGCGTGAAGTTCGCTCTACTCGCTCGTCACCTTGAAAGACCCCTTCAGCAATCAGAGCATTCACCAATCCGCCGTGATTCCGATGAAGTCGCTGACAATGAGGAAGATGAAGATGATGCATTGGTCATAGACGAGGAACCAGAGTTGGAACCTGAAGAGCACCTAGCTGCAAAACGAGCCGCAGCAGAAATCCTTATGGCTACATGCCAGCAGGAGCTAAACAAGGACTTTGATCTCAAAATCGCTGGCAATCTCATCAACAAGCCGGTTACGGACAAGATTGAAACTGGGACAGACCCTATTCCGCTGATGCTGGAGCCCCTGCCTGTTCCGGTGGTGCCGACGAGGAGCGATGAAGAGGAAGACGAGGAAGGACTGGTTGCCTCCACCAGTGAGGGCAATAATTCTGGAAGCGATGAGAATAACCTTGCTCCAAACCGTGTCTCCTGCCCTTACTGCCACCGGAAATTCCCGTGGTCCTCATCATTACGCCGCCATGTCCTGACTCACACTGGACAGAAGCCCTTCAAATGTCCACACTGCCCATTGCTGTTCACGACTAAATCTAATTGTGACAGACATTTACTGAGAAAACATGGTGGATCAGCCAGGGCAATATTAGCTAAGCCGATTCCTGATGCTGTTTCCCCTCCGCAGCCTGCTAATGACATCCGAACCGTGCCAGAAAGACCTTACAAATGCGGCACCTGTCCTACCAGCACTTTCTCAACAATGGATACTTTGAAGAAGCACATCTCCTCTCGCCATGGATCCGGAGAATCCCATCCGAACTCGCCTAACCCAGACAATCATGATGAAACCCTGGATGGTTTAGTCTTTAAGTGCCATCTGTGTGAAGCGGCTTACCATGATCGAAGTGGAACTTTGAACCACCTCGCCAATAATCATGCAACAGAGTATGAACATCTGGTTAGCAAGGGAGCTTTGGAAGCGACCAGTGATAAGAGCGAGAATACCGATGATGACGACAGGGGAAAGTTTCCCGATCATGCTAATAGAAAGGTTGTGTGCGCGTTCTGCGTGCGTCGTTTCTGGTCGGCTGAGGACCTGCGCCGGCACATGCGCACGCACTCCGGCGAGCGGCCGTTCGCCTGCGACCTGTGCCGGCGCCGCTTCACGCTCAAGCACAGCATGCTGCGTCACCGCAAGAAGCACAGGGAGGAGATCACTGATGACGAGGACGCTTCGCCGAACACGCCTGACGATAAAATCAATGgCTACTGCTTTCAAGACGACGACTCCGGCAACGAGATACCGAACAACGTGAACAACAACAACTCCCCCCCAGCGGCCCCCTACGAGAAGAAACTCAAGCTGGACATGACGTCACGCAAGTACTCCTCCGAAGAAAACGACGGAGAAAACGGCAGCGACCTCATCGGGAAGCTCCTTGGAATCCCGGACAAAACGATCAACAAACTCCTCTCTTCGGCAGACGAGGCGGCCAAAATACTAGGCGTTAATAAATGA
- Protein Sequence
- MLIEIKTEEGAAKFEAEEMERMIIERQELRGTRTTSIDSDNRSDRSEEDDCRRARKRAASTSPSPIPMDKRIALFECPKCYQRFESVNAFDMHRFTVHGDDSRSGYDDLIDFSNKKFPEITRGLNNFRCDLCMRDFINANVLDIHRKTCSPSNRIPTPNRDNREHFFAKLDLRNSSFAIPGTLTPPMERFTPKFDDGHITNGIRQIDGTRDLADIQSMLNVTSTGSLLERLTGTRVSLESSVLTPPDTIAKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNTKLARDEVKRSLSFHSPPEIDRRNEITGRDTPVTHHFSPNFITDRHPVASLTSKRIPDLAPLPPRELEQSVPRINVKSIGQLTQIPEFRVPDRSFKNNDIKPEVYEEETPVDLSTSDNNCDVLDLSKKKRDSDNEEPKAPTPSRPAFEPDAVSVAATAFEKTRLLLAQQRLFENSLPKIDPAYYATQLSQLYAGALPGLHGLPLPPSFPYFLQPSFFSHPDSPEMTEIKQIIRGLSMSGGRLLPNEQEIQPKQEPEPEIEEKPVPLVISPVPSPHSESPRLISNNTSLVPQTDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDALVDRVKFALLARHLERPLQQSEHSPIRRDSDEVADNEEDEDDALVIDEEPELEPEEHLAAKRAAAEILMATCQQELNKDFDLKIAGNLINKPVTDKIETGTDPIPLMLEPLPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENNLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAKPIPDAVSPPQPANDIRTVPERPYKCGTCPTSTFSTMDTLKKHISSRHGSGESHPNSPNPDNHDETLDGLVFKCHLCEAAYHDRSGTLNHLANNHATEYEHLVSKGALEATSDKSENTDDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDEDASPNTPDDKINGYCFQDDDSGNEIPNNVNNNNSPPAAPYEKKLKLDMTSRKYSSEENDGENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00661758;
- 90% Identity
- -
- 80% Identity
- -