Basic Information

Insect: Cosmorhoe ocellata
Gene Symbol: RREB1
Assembly: GCA_963675405.1
Location: OY776267.1:4361744-4375696[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.48 34 5.9 3.4 1 23 92 115 92 115 0.93

2 12 1.1 78 4.7 0.1 1 22 144 165 144 165 0.94

3 12 0.026 1.8 9.9 0.1 1 23 293 315 293 315 0.97

4 12 0.0014 0.097 13.9 0.4 1 23 324 346 324 346 0.99

5 12 0.00086 0.06 14.5 2.0 1 23 352 375 352 375 0.97

6 12 0.0035 0.24 12.6 1.6 1 23 725 748 725 748 0.96

7 12 0.00029 0.02 16.0 1.3 2 23 937 958 936 958 0.97

8 12 0.03 2.1 9.7 5.3 1 23 964 987 964 987 0.97

9 12 0.12 8.6 7.7 1.2 1 23 1020 1044 1020 1044 0.93

10 12 0.54 37 5.7 0.6 1 23 1068 1091 1068 1091 0.93

11 12 0.0021 0.15 13.3 0.2 2 23 1131 1152 1130 1152 0.96

12 12 0.033 2.3 9.5 5.3 1 23 1158 1180 1158 1180 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.48	34	5.9	3.4	1	23	92	115	92	115	0.93
2	12	1.1	78	4.7	0.1	1	22	144	165	144	165	0.94
3	12	0.026	1.8	9.9	0.1	1	23	293	315	293	315	0.97
4	12	0.0014	0.097	13.9	0.4	1	23	324	346	324	346	0.99
5	12	0.00086	0.06	14.5	2.0	1	23	352	375	352	375	0.97
6	12	0.0035	0.24	12.6	1.6	1	23	725	748	725	748	0.96
7	12	0.00029	0.02	16.0	1.3	2	23	937	958	936	958	0.97
8	12	0.03	2.1	9.7	5.3	1	23	964	987	964	987	0.97
9	12	0.12	8.6	7.7	1.2	1	23	1020	1044	1020	1044	0.93
10	12	0.54	37	5.7	0.6	1	23	1068	1091	1068	1091	0.93
11	12	0.0021	0.15	13.3	0.2	2	23	1131	1152	1130	1152	0.96
12	12	0.033	2.3	9.5	5.3	1	23	1158	1180	1158	1180	0.97

Sequence Information

Coding Sequence: ATGCAGGGCGGCGCAGGAGTGTCTGCGGCTCCCGCGGCTGAGCCACCGCCTTCTCAACAAATCAAAACAGAGGAGGTCTGCGAGGCTCAAACCGAGGCCGGGGAAATGGAAAGGATGGTTATCGAACGCCAGGAGCTGAGAGGCACTCGTACCACCAGCATCGATAGCGACAACTGCTCCGATAGGAGTGAGGAGGATGACTGTCGGAGAGCCAGAAAACGGGCCGCGTCGACCTCTCCCTCCCCCATCCCCATGGACAAAAGGATCAGGCGCTTTGAATGCCCAAAATGTCATCACCGATTTGACTCTGTCAACGCGTACGATATGCATCGTTTCACCGTCCATGGCGATGACTCCCGTTCCGGTTACGACGACCTCGTCGACTTCTCTAGCAAGAAGTTCCCCGACATCACCCGCGGACTCCACAACTTCAGATGTGATCTGTGCCTGAGAGATTTCATCAACGCGCAAGTCTTAGACATCCATAGAAAAACTTGCTCCCCTTCTAACAGAATACCCACACCGGACCGTGATCGCAGAGAAGATTTTTTCGCGAAACTCGACCTTAGGAACAGGTCTTTTGGGATTCCAGGCACGTTGACTCCGCCTATGGAAAGGTTCACGCCAAAGTTTGACGATGGACATAATATCAGTAACGGCATACGACATTTGGACGCCGCGCGCGACTTGGCAGATATTCAATCGATACTCAACGTCACGTCGACGGGAAGCCTTTTAGAGAGACTCACTGGCACCAGAGTCAATTTAGAAAGTTCTGTGCTAACTCCACCGGACACTATTGCAAAAGATCGTGACCAGGAAGAAACTCAAGATAACTTTGCAGCTGAATTCAGACGAATGAAGCTACGTGGTGAATTTCCTTGCAGATTGTGCCCTGCTAAATTTCCAAATCTACGCGCTTTAAAGGGACATAACAGAGTGCATCTTAGCGGCACTGGACCGGGCCCTTATCAATGCAACATGTGCCCCCATGCTTCATTGGATAAGGCAGCTTTGGTCAGGCATATGAGGACACACAACGGCGACCGCCCTTACGAGTGTGCTGTTTGCAACTACGCTTTTACTACAAAAGCTAACTGCGAGCGACACTTGAGAAACAGACACGCAAAGGTTACCCGAGAAGATGTAAAGCGTTCCATCATTTACCATCCGTCGGAAGATCCTAACAACGACGAAGTAAACTCCAAGCTCGCACGAGATGAGGTCAAGAGATCGCTCGCTTTCCACTCGCCTCCTGAAATCGACAGACGTAATGAGATCACTGGCCGCAACACTCCTGTAACGCATCACTTTACGCCTAGCTTCATCACCGATAGACACCCTGTGGCTTCGCTGACGTCTAAGCCAATACCTGACCTAGCTCCCCTTCCTCCAAGGGAAGAACAACCTGTGCCAAGAATCAATGTCAAAAGCATCGGGCAGCTAACGCAAATACCCGAATACAGAGCTCCAGATCTTTCGTACAAAACCGAGATCAAGCCGGAACTCTACGAAGAAGACGCTCCAGTTGATCTAAGCACGAGCGATAACAACAACTGTGATGTACTCGATCTCAGCAAGAAGAAGCGAGATAGCGACAATGAAGAACCGAAAGCTCTAACTCCTACGCGCCCAATTTTTGAACCTGATGCAGCATCAGTTGCGTCTTCAGCATTTGAAAAGACGAGGTTGTTGCTCGCTCAGCAGAGACTCTTTGAAAACTCTCTCCCAAAGATAGACCCTGCTTATTATGCCACTCAACTTTCCCAACTCTACGCCGGAGCAGTACCTGGACTGCACGGCCTCCCATTGCCGCCTTCTTTTCCTTACTTTCTCCAGCCTTCTTTTTTTCCCCACCCTACTGATTCTCCCGAAATGACAGAAATTAAGCAACGAATCCAGAAGGAAATTATTCGAGGTCTTAGCATGTCTGGTGGAAGACTAGTCCCAAATGAGCAAGAGATTCAACCCAAGCAAGAACCCGAACCAGAGATTGAAGAACCGCCCGTACCGCTTGTAATATCGCCTGTACCGTCACCCCGTCCAGAATCTCCACGACCAATATCCAACAGCAACAGCATGGCACCGCAGACAGATTCTGTCAAAATGGTGATCAAGAATGGTGTTCTGATGCCCAAGCAGAAGCAAAGGCGCTATCGTACTGAGCGCCCTTTTTCCTGTTCCCAATGTTCGGCTAGATTCACACTTCGATCCAATATGGAACGTCATGTGAAACAGCAACATCCTCAGCACTGGAGCGTAAGACGACCAGCTCCGAGGGCTCCTCCGCCATATCCGTCGTCTGATGCTTTAGCTGATCGCGTAAAGTTCGCATTACTAGCGAGACACCTTGAAAGACCTCTTCAGCAATCCGATCGCTCACCAATCCGCCGTGATTCGGACGAAGTCGCTGATAACGAGGAAGATGAAGACGACGCTTTAGTCATTGACGAAGAACCAGAGCTGGAACCTGAAGAGCATCCAGCTGCCAAACGGGCTGCAGCGGAAATCCTTATCGCCACCTGCCAGCAGGAGTTGAACAAAGACTTTGATCTCAAAATCGCTGGCAATCTCATCAACAAACCGATTGCTGATAAGATTGACACGGAACCTATTCCTTTGATGCAAGAGCCATTGCCTGTCCCAGTGGTGCCGACGCGAAGTGATGAGGAAGAAGATGAAGAAGGCTTGGTTGCCTCTACAAGTGAAGGCAATAACTCTGGAAGCGATGAGAATAAATCTGACGCTGACACTGGAAACCAGCCACCGAAGAAGCGCTCAGCTTACAGTCTAGCCCCAAACCGCGTCTCTTGTCCGTACTGCCACCGGAAGTTCCCATGGTCCTCATCGCTACGCCGCCATGTACTCACCCACACTGGACAGAAGCCCTTCAAATGCCCGCACTGCCCTTTACTATTCACGACCAAGTCCAACTGCGATAGACACTTACTTAGAAAACATGGTGGGTCAGCCAGGGCTATACTAGCCGACCCTGTCCCTGAGACCGTGACTCCACCGCAGCCTGTAAACGACACTCGCGCAGTGCCAGAAAGGCCTTTCAAATGTGGCACTTGCCCTACCAGCACCTTTTCGTCAATGGAGACTTTGAAGAAGCACATCTCATCTCGCCACGGTTCAGTAGAGTCCCAACCGAGCTCGCCTATCCCAGATAACCACGATGACACCCTCGATGGCCTGGTCTTCAAGTGCCATCTCTGTGAAGCTGCTTACCATGACCGGAGCGGAGCTTTGAACCACCTTGCCAATGCGCATGCAACGGAGTATGAACAGTTGGTGACCAAGGGTGCATTGGACGGTACGAGTGATAAGAGTGAGAACACCGATGATGACGACAGGGGAAAGTTTCCAGATCATGCCAATAGAAAGGTAGTCTGCGCGTTCTGCGTCCGTCGTTTCTGGTCGGCCGAGGATCTGCGCCGGCACATGCGTACACACTCAGGCGAGCGCCCGTTCGCATGCGACCTCTGCCGCCGCCGCTTCACCCTGAAGCATAGCATGCTGCGTCACCGCAAGAAGCATAGAGAGGAGATCACAGATGACGATGAAGCCTCGCCGCCGAACACGCCTGAGGAGAAAACCAATGGCTACCGCTTCCAAGACGATGATTCCGGCAACGAGATACCAAACAACGTGAACAACAACAACTCCCCCCCAGCGGCGCCGTACGAGAAGAAACTAAGACTCGACATGACTTCCCGCAAGTATTCCTCCGAAGAAAATGACGGTGAGAACGGCAGTGATCTCATCGGTAAACTCCTCGGTATCCCTGATAAGACGATCAATAAGCTGCTGTCTTCGGCTGATGAGGCGGCGAAAATATTAGGCGTGAATAAATGA
Protein Sequence: MQGGAGVSAAPAAEPPPSQQIKTEEVCEAQTEAGEMERMVIERQELRGTRTTSIDSDNCSDRSEEDDCRRARKRAASTSPSPIPMDKRIRRFECPKCHHRFDSVNAYDMHRFTVHGDDSRSGYDDLVDFSSKKFPDITRGLHNFRCDLCLRDFINAQVLDIHRKTCSPSNRIPTPDRDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFDDGHNISNGIRHLDAARDLADIQSILNVTSTGSLLERLTGTRVNLESSVLTPPDTIAKDRDQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHSPPEIDRRNEITGRNTPVTHHFTPSFITDRHPVASLTSKPIPDLAPLPPREEQPVPRINVKSIGQLTQIPEYRAPDLSYKTEIKPELYEEDAPVDLSTSDNNNCDVLDLSKKKRDSDNEEPKALTPTRPIFEPDAASVASSAFEKTRLLLAQQRLFENSLPKIDPAYYATQLSQLYAGAVPGLHGLPLPPSFPYFLQPSFFPHPTDSPEMTEIKQRIQKEIIRGLSMSGGRLVPNEQEIQPKQEPEPEIEEPPVPLVISPVPSPRPESPRPISNSNSMAPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDALADRVKFALLARHLERPLQQSDRSPIRRDSDEVADNEEDEDDALVIDEEPELEPEEHPAAKRAAAEILIATCQQELNKDFDLKIAGNLINKPIADKIDTEPIPLMQEPLPVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSDADTGNQPPKKRSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILADPVPETVTPPQPVNDTRAVPERPFKCGTCPTSTFSSMETLKKHISSRHGSVESQPSSPIPDNHDDTLDGLVFKCHLCEAAYHDRSGALNHLANAHATEYEQLVTKGALDGTSDKSENTDDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEITDDDEASPPNTPEEKTNGYRFQDDDSGNEIPNNVNNNNSPPAAPYEKKLRLDMTSRKYSSEENDGENGSDLIGKLLGIPDKTINKLLSSADEAAKILGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00661758;
90% Identity: iTF_01170953;
80% Identity: -