Egri001980.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ectropis grisescens
Gene Symbol
L
Assembly
GCA_017562165.1
Location
chr05:17131961-17168335[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.2e-06 6.6e-05 23.2 1.7 1 23 86 108 86 108 0.99
2 14 0.5 28 5.5 5.8 1 23 114 136 114 136 0.97
3 14 6.7e-06 0.00038 20.8 4.1 1 23 142 164 142 164 0.99
4 14 2.1e-05 0.0012 19.3 0.1 1 23 170 192 170 192 0.98
5 14 1.6e-05 0.00089 19.6 0.1 2 23 208 230 207 230 0.95
6 14 2.2 1.2e+02 3.4 0.2 3 23 253 275 251 275 0.79
7 14 0.24 13 6.5 0.0 3 23 325 345 324 345 0.97
8 14 0.012 0.68 10.5 0.0 3 23 360 380 359 380 0.95
9 14 0.0022 0.12 12.9 0.2 1 23 388 411 388 411 0.93
10 14 0.026 1.4 9.5 0.1 1 23 416 439 416 439 0.92
11 14 0.02 1.1 9.9 0.1 1 23 493 517 493 518 0.93
12 14 0.00079 0.045 14.3 0.0 2 23 575 596 574 596 0.96
13 14 0.046 2.6 8.7 0.0 1 23 604 626 604 626 0.98
14 14 2.4 1.4e+02 3.3 0.8 2 23 634 655 633 656 0.92

Sequence Information

Coding Sequence
ATGATCATGCTATTCAAGGGAAACAGCAGTAGGCTGGAACACCTTATCGAGAAGATACAAGCCAATAAAGAGAACCACGAGGTCTCTTCGGACGAGATAAAAGAGGCGCTGGGCAGCGTAGGCAGCGCAGCGGGCAGCTCGTGGCCGTCGTCGACGCCGGAGCCGTCGGCATCACCGGGCTCGGCGCGCTCCGCCGACGCTGCCGACGCGGACGCCGAGCCGCCCTTCACGCTCGGCGCCACCGAGCACACGCCCTACCAGTGCCAGTTCTGCGACAAGGCCTTCCCCAGGCTCTCTTACCTCAAGAAACATGAACAGACACATTCAGACCAGATGCCGTTTCGATGTGAGTTCTGCTCGAGGCTGTTCAAGCACAAGCGGTCGCGAGACCGGCACGTCAAGCTGCACACCGGGGACCGCAAGTATCGCTGCGCGCACTGCGAGTCTGCCTTTTCTAGGAGCGACCATTTGAAAATCCACATGAAAACACACGACAATCAGAAGCCGTTCCAATGCACGGTGTGCAACCGAGGCTACAACACGGCGGCGGCTCTCACGTCGCACATGCAAGGCCACAAGCGGGAGCGGGAGGGCCGCGAGCCAGACCGGCGGAGGGCCCTGCGCTGTTTGACCTGTGGCGAAGGATTCAGGAGACCAGACCTTTTACAGGCCCACATGACGTCAGCACACGGCGTGGATGCGGCGCTGACCCCGCCGCGGCGCGTGGCCTCTCAGCCGCCTCCGACTCTGCTGGCCTGCATGTACTGTACTCGAGATACCTTCACCAGCATGGAACAGCTGCAACTGCACGTCCGAGCCGCCCACTCCGCACTACTCAATGGCGAGGGCTTACTCGCAGACCAGCCCGCCCCCACCGATCTCAGCCGACGAGCCTCCGACGAGATACCCACCAAGCGACCTCGCTCCGGCTCCGGAACGCCGCAAATCACACTATCCCCCAACACGCTGCTATGTAACCAGTGTGACGCAGCTCTACCGGACTTTGAAGCGTTTCGCGCGCATCTAAAAGGGCACTTAGAGGAAGGTGGAGAGTTGACGCGTACGAGTCCAGCGCCGTGTGTGCATTGTGGTGCTACTTTCGCGGATGCGGCGGCCGCTGAGAGGCACCTGTCTGCGCACTACCTGGCGGTGTCGTGCGAGTACGCGTGTCATAGCTGCGCGCGCACGTTTCCCGCGCCCGATGACCTTCAGAAACATCTACTGGATCTCCACGCGCATCATCTCTACCGCTGCTCCTTGTGCAAGGAGATTTTCGACTCGAAAGTAGCTATTCAGGTTCATTTCGCGGTGGCGCACAGCGGCGAGAGCAAGGTGTGGGTGTGTCGCGggtgcggcggcgcggcgggcgcgctgCGGTCGGAGGCGGAGGGCGCGGCGCACGTGCGGGCCGCGCACGGCGGCGCGCGGTGCGCGTGCGGCGCGCTCCTGGCCGGCCCGCGCCTGCGTCCGCGCGCCTACCGCTGCCCCGCGCCCGCCTGCACCGACGCCTTCGCCGTGCAGTATCTGCTAGAACGGCACATGCAGCTACACCACAACGTTGCACACCAGGTATTGAACGGTGAACCGACGCGGCCGAAACGTGCAGAGAACAACAACGGCACAGAGGCTGAAGGCGCGTGTTCTCCCTGTGGAGAGGGCACTGGTGCCGCAGGAGGAGGTGGAGGGGAGGAGCGGCGTCGCAAGAACGGCTCGGTGGCGCTGCAATGTGCGTACTGTGGGGAACGCGCGCGCTCCCGAGCCGAGCTAGAGGCGCACACGCGGGCGCACTCCGGTGCCGCCGCCGCCAGGCACAAGTGCCTAATTTGCGACGAAGTACTGCCCTCGGCAGCAGTACTGGCTGAACATAAACTCACTCACTGCAAGGTTGTTTGCGGAGACACGTGCGCGCGCTGCCGGTCGCGGCTGGTCTCCGAGGAGTCGTTCCTGGCGCATATGGCGCGCCACCACCCCGCGCTGCCGGCGCCCTGCGTCGTCTGCCGCCAGACGCTGGCTTCCGAGCCTGAGGCGCGGCTCCATGCTCGCTTCCATCTCCGACCGGCGGACGACGAACAGAGATGCGCGTTATGCCTGCGCGCGCTAGGGGAAGGcgagggcgcgggcgcgggtggcggcgcgcgcgcgtgcGCCGCGTGCTACGCGCGCCACGCCGCCCCCCGCGCGCCTCCCCCCCCGCTGACCACGACTGCCGCCTGTGCCGCCGCGCGCTCGGCTCTCCTACCAGACTGCAGGCTCACTTGA
Protein Sequence
MIMLFKGNSSRLEHLIEKIQANKENHEVSSDEIKEALGSVGSAAGSSWPSSTPEPSASPGSARSADAADADAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKREREGREPDRRRALRCLTCGEGFRRPDLLQAHMTSAHGVDAALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHSALLNGEGLLADQPAPTDLSRRASDEIPTKRPRSGSGTPQITLSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGELTRTSPAPCVHCGATFADAAAAERHLSAHYLAVSCEYACHSCARTFPAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWVCRGCGGAAGALRSEAEGAAHVRAAHGGARCACGALLAGPRLRPRAYRCPAPACTDAFAVQYLLERHMQLHHNVAHQVLNGEPTRPKRAENNNGTEAEGACSPCGEGTGAAGGGGGEERRRKNGSVALQCAYCGERARSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVCGDTCARCRSRLVSEESFLAHMARHHPALPAPCVVCRQTLASEPEARLHARFHLRPADDEQRCALCLRALGEGEGAGAGGGARACAACYARHAAPRAPPPPLTTTAACAAARSALLPDCRLT