Eexi002895.1
Basic Information
- Insect
- Eupithecia exiguata
- Gene Symbol
- L
- Assembly
- GCA_947086465.1
- Location
- OX352228.1:7189677-7196679[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.54 34 5.4 5.8 1 23 3 25 3 25 0.97 2 15 7.2e-06 0.00046 20.7 4.1 1 23 31 53 31 53 0.99 3 15 2.2e-05 0.0014 19.2 0.1 1 23 59 81 59 81 0.98 4 15 2e-05 0.0013 19.4 0.1 2 23 97 119 96 119 0.95 5 15 2.6 1.6e+02 3.3 0.3 3 23 143 165 141 165 0.79 6 15 0.26 17 6.4 0.0 3 23 212 232 211 232 0.97 7 15 0.14 9 7.2 0.0 3 23 247 267 246 267 0.91 8 15 4e-05 0.0025 18.4 0.6 1 23 275 298 275 298 0.94 9 15 0.0097 0.62 10.9 0.1 1 23 303 326 303 326 0.92 10 15 0.0014 0.088 13.6 0.2 1 23 380 404 380 405 0.96 11 15 0.00086 0.055 14.2 0.0 2 23 455 476 454 476 0.96 12 15 0.14 9 7.2 0.0 1 23 484 506 484 506 0.97 13 15 0.75 48 5.0 0.3 1 23 610 632 610 632 0.94 14 15 0.003 0.19 12.5 0.1 1 20 640 659 640 662 0.95 15 15 0.065 4.2 8.3 0.3 1 23 669 691 669 691 0.94
Sequence Information
- Coding Sequence
- ATGCCATTCCGCTGCGAGTTCTGCTCACGGCTGTTCAAGCACAAGCGGTCTCGCGACCGGCACGTGAAGCTCCACACGGGAGACAGGAAGTACCGCTGTGCTCATTGCGAGTCTGCCTTTTCAAGAAGCGATCATCTAAAAATCCACATGAAAACCCACGACAACCAGAAGCCCTTCCAATGCACGGTCTGCAACCGCGGCTACAACACCGCTGCGGCTCTGACGTCACACATGCAAGGACACAAGAGGGATAGGGAGGGGCGAGAGCCTGACAAAAGGAGGTCGATGCGTTGCTTGCGATGCGGCGAGGCTTTCCGGAGACCGGATCTACTGCAGGCCCACATGGCCAGCACTCACGGCGTGGACGCGGCCGCCCTCACCCCACCTCGCCGCGTCGCCTCGCAACCACCGCCAACACTCCTCGCCTGCATGTACTGCACTCGTGACACCTTCACCAGTATGGAGCAACTACAGCTACACGTCCGAGCCTCTCACTCTGCCTTACTCAACGGTAGCTCTCCGGAGCAGCCGACCCCGACCGATCTTAGCCGAAGAGCTTCCGACGATGCTCCACCTGCCAAACGCCCGCGCTCCGGAACCCCTCAAACGACCTTATCTCCCAACACGCTGTTGTGCAACCAGTGCGACGCAGCATTACCGGACTTCGAAGCCTTCCGCGCGCATTTGAAAGGACATATCGACGAAGGGGGCGAGTTAACGCGAACTAGCCCAGCTCCATGCGTCCACTGTGGAGCTACCTTTGCTGATGCGGCCGCATCGGAACGTCATCTCACCGCGCATTACTTGGCAGTGTCCTGTGAATACACTTGCCACAGCTGCGCTCGAAGTTTCCCTACTCCCGATGATCTGCAAAAGCACCTGTTGGATCTGCATGCGCATCATCTTTACCGTTGCTCGCTGTGTAAGGAGGTGTTCGACTCTAAGGTTGCGATTCAGGTCCACTTCGCCGTAGCACATAGTGGTGAGAATAAAGTATGGGTTTGCCGTGGCTGCGGCAGCAGCGCCGGAGCCCTACGGTCGGAGGCCGACGGCGTCGCCCACGTGCGGTCACGGCACGCGGGCGCGCGCTGCTCCTGCGGCGCTCTGCTGGGAGGTCCGAGGCTGCGCCCCAGGGCTTACAGGTGTCCGGTCCCAACCTGCACTGATGCATTCGCCGTTCAATATCTGCTGGAGAGGCATATGCAAGTGCATCATGCTATGGCGCAACAGGTGCTCAATGGCGAGATAACCCGACCGAAGCGCGTAGAAAACAACAACGGTACGGAAGATGGCGCCTGTTCCCCTTGCACCACCGAGCCCATAGCCGAGGAGCGAAGACGGAAGAACGGAGCGGTGGCGCTGCAGTGCGCGTACTGCGGCGAGCGGGCAAGGTCCCGGGCGGAGTTAGAGGCGCACACTAGAGCTCACTCGGGCGCCGCGGCCGCGAGGCACAAGTGTCTCATATGCGACGAGATCCTGCCGTCCGCTGCCGTGCTGGCTGAGCATAAGCTGACGCATTGCAAGGTGGTGGCCGGCGATACTTGCTCCCGCTGCCGCGCGCGGCTTCTCTCAGAGGAGTCGTTCCTAGCGCACATGGCGCGGCATCAGCCCGCGTTGCCTGCGCCTTGCGTCGTCTGCCGCCAGACGCTCGCCTCCGAGGCTGAGGCCAGGCTGCACGCGCGCTTCCATCTGCGACCCAGTGACACGGAGCAAAGATGTGCAATCTGCCTGCGTGCACTCCCGGAAGGCGAAGGAGGCGAGGGCGCGCGCGCGTGCTCATCGTGCTACGCGCGCCACGCCGCCCCGCGCTCCGCGCCACCCGCCGACCACGACTGCAGACTCTGTCGCCGGGCCCTTGGCTCACCCACGAGACTACAAGCCCATCTTATAGAACACACCTTCGCTGGGATCGGGGCTTTTACTTGCTACCTATGCTCGGCAGTTTTCACCAGCGCAGCGGGTCTACAGCGGCATTTACCGGAGCACGCCTCAGCGCCGAGGCCGTACGACTGCGGCCGATGCGGGATGAAATTCTTCTTCCGGGCAGAGTTAGATAATCACGCCTTCGTGCATTTAGAAGAGGCTGAGATAGCGCAGCGAGCGTTCTATGAGGCCTACGCGCGTGGAGCAGCGAACGCCTGGGCGGCCTTAGCTCCTCCGGAGACGGCCCACGTGACCACTCCGGCGCCGGAGGTGAAACAGGAACCAGAGATAAAGGAGGAACGTAATGATGAGTACATAGAAGTTGGATCGCCACCGCCTGTGACGCAGCCGTCGACAACCCCACGACCCGTCGTCAAACAAGAAAAGCCTGATGAAGATTAG
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDKRRSMRCLRCGEAFRRPDLLQAHMASTHGVDAAALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRASHSALLNGSSPEQPTPTDLSRRASDDAPPAKRPRSGTPQTTLSPNTLLCNQCDAALPDFEAFRAHLKGHIDEGGELTRTSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFPTPDDLQKHLLDLHAHHLYRCSLCKEVFDSKVAIQVHFAVAHSGENKVWVCRGCGSSAGALRSEADGVAHVRSRHAGARCSCGALLGGPRLRPRAYRCPVPTCTDAFAVQYLLERHMQVHHAMAQQVLNGEITRPKRVENNNGTEDGACSPCTTEPIAEERRRKNGAVALQCAYCGERARSRAELEAHTRAHSGAAAARHKCLICDEILPSAAVLAEHKLTHCKVVAGDTCSRCRARLLSEESFLAHMARHQPALPAPCVVCRQTLASEAEARLHARFHLRPSDTEQRCAICLRALPEGEGGEGARACSSCYARHAAPRSAPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCGRCGMKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAANAWAALAPPETAHVTTPAPEVKQEPEIKEERNDEYIEVGSPPPVTQPSTTPRPVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635642;
- 90% Identity
- iTF_01429280;
- 80% Identity
- -