Hchr002364.1
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- L
- Assembly
- GCA_947063395.1
- Location
- OX346710.1:9890734-9912092[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.6e-06 0.00013 22.9 1.7 1 23 84 106 84 106 0.99 2 17 0.68 55 5.2 5.8 1 23 112 134 112 134 0.97 3 17 9.1e-06 0.00073 20.5 4.1 1 23 140 162 140 162 0.99 4 17 2.8e-05 0.0023 19.0 0.1 1 23 168 190 168 190 0.98 5 17 3.2e-05 0.0026 18.8 0.1 2 23 206 228 205 228 0.95 6 17 3 2.4e+02 3.2 0.2 3 23 252 274 250 274 0.79 7 17 0.49 40 5.6 0.0 3 23 324 344 323 344 0.97 8 17 0.094 7.5 7.9 0.0 3 23 358 378 357 378 0.94 9 17 0.001 0.081 14.1 0.4 1 23 386 409 386 409 0.94 10 17 0.037 2.9 9.2 0.1 1 23 414 437 414 437 0.92 11 17 0.041 3.3 9.0 0.1 1 23 490 514 490 515 0.87 12 17 0.00075 0.061 14.5 0.0 2 23 570 591 569 591 0.96 13 17 0.062 5 8.5 0.0 1 23 598 620 598 620 0.97 14 17 3.3 2.6e+02 3.0 1.1 2 23 628 649 627 650 0.94 15 17 0.94 76 4.7 0.3 1 23 729 751 729 751 0.94 16 17 0.0038 0.3 12.3 0.1 1 20 759 778 759 781 0.95 17 17 0.17 14 7.1 0.5 1 23 788 810 788 810 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTCAAGGGTAACAGCAGCAGGCTGGAACATCTCATAGAGAAGATACAAGCTAATAAAGAAAATCACGAAGTTTCTTCTGAAGACATAAAAGAGGCGCTGGGCAGCGTGGGGAGCGCGGCGGGCAGCTCCTGGCCGTCGTCGACGCCGGAGCCGTCGCCTGCCTCCACTCCCTCGGCTGAGGCTGCCGACACAGACGCCGAGCCACCCTTCACTCTCGGCGCCACTGAACACACGCCCTACCAGTGCCAGTTCTGCGACAAGGCCTTCCCACGCCTCTCCTACCTTAAGAAACATGAAcagACACATTCCGATCAAATGCCGTTCCGATGCGAGTTCTGTTCGCGTTTGTTCAAACACAAGCGTTCGCGGGACCGGCACGTCAAGCTTCACACAGGCGACCGCAAGTACCGCTGCGCGCATTGCGAGTCTGCATTCTCTAGGAGCGATCATCTGAAGATCCACATGAAGACTCATGACAACCAGAAGCCGTTCCAATGTACGGTGTGCAACCGTGGATACAACACCGCGGCCGCGCTCACCTCACACATGCAAGGACACAAGCGCGAGAGAGAGGGACGGGAGCCTGACAGGAGGAGAGCTCTGCGATGTTTGAGGTGTGGGGAGGGTTTTCGGAGACCTGATCTTTTGcagGCACACATGGTGACAGCTCACGGCGTTGAAGTAGCGGCGTTGAGTCCACCTCGGCGCGTGGCCTCGCAGCCGCCGCCGACCCTGCTCGCCTGCATGTACTGCACGCGCGACACGTTCACCTCCATGGAGCAGCTGCAGCTGCACGTGCGCGCCGCACACACCGCGCTGCTCAACGGAGAGGGTCCGCACGGGCCCGAACAACCGGCGCCCACCGACCTCAGTCGACGAGCGTCCGACGACGTGCCCCTAATCAAACGGCCGCGCTCCGGAACCCCTCAGATCACGATGTCTCCGAACACGCTGCTCTGCAACCAGTGTGACGCCGCGCTGCCTGATTTCGAGGCATTCCGCGTTCACCTGAAAGGTCACCTGGAGTCAGGCGGGGAGCCGCGCACGAGCCCAGCTCCTTGCGTACATTGTGGCGCGACGTACGCGGACGCCGCGGCTGCGGAACGTCACCTTACAGCGCATTACTTGACCGCCTCCTGCGAGTACACGTGCCACAGTTGCGCGCGAACATTCCCCGCGCCCGACGACTTACAGAAGCATCTCCTCGACCTGCACGCTCACCATCTCTATCGCTGCTCCCTCTGCAAGGAGATCTTCGACTCGAAAGTCGCCATACAGGTTCACTTCGCGGTGTCCCACAGCGGAGAGAGCAAGGTGTGGATGTGCCGCGGGTGCccgggcggcgcggcgctgggctcggcgggcgcgggcgcggcgcacGTGGCGGCGGCGCACGGCGGCGCGCGCTGCTCGTGCGGCGCGCTGCTCGCCCCCGCGCGCCTGCGCCCGCGCGCCTACGCCTGCCCCGCGCCCGCCTGCACCGACGCCTTCGCCGTGCAGTACCTGCTCGAGAGGCACATGCAGATACACCACGCCGCCGCACAACAGGGTATGAACGGAGACACGTCTCGATCGAAGCGCGTAGAGAACAACAACGGAACGGACGCGGGCTCGTGTTCCCCTTGCATGGGCGGGGGAGACATCACCCCCACCGGCACTGAAGAGAGGAGGAGGAAGAACGGCGCAGTCGCTCTGCAGTGTGCGTACTGTGGAGAACGGGCGAGGACTCGTGCCGAGTTGGAGGCGCATACTCGAGCGCATTCTACCGCTGCGGCCAGACACAAGTGTCTTATATGTGATGAGGTGCTGCCTTCTGCTGCCGTCTTAGCTGAGCATAAGCTTACGCATTGCAAGGTGGTGGTCGGCGACACATGCTCAGTATGTCGTTCTCGGCTGGTGTCGGAGGAGTCGTTCCTGGGTCACATGTCGCGGCATCACCCCGCGCTGCCCGCGCCTTGTGTCGTGTGTCGACAGACGCTTGCTTCGGAACCGGAGGCGAGGTTGCACGCACGCTTCCACCTGCGCGTCGCTGATGATGAACAGAGATGTGCGCTATGCCTGCGCACGCTGCCCGCGGGTTCGAGCGGCGGCGGGGAGTCCGCCCGCGCGTGCGCCGCGTGCTACGCGCGACACTCTGCGCCGCGCGCGCCTCCCTCCAGCTCCACAACCGACCACGACTGCCGCCTGTGTCGCCGCGCGCTTGGCTCGCCCACACGCTTGCAGgCGCACCTGATCGAGCACACATTCGCCGGTATCGGAGCGTTCACGTGCTACCTGTGCTCGGCCGTGTTCACGAGCGCGGCGGGCCTGCAGCGGCACCTGCCCGAGcacgccgccgcgccgcgcccctaCGACTGCACGCGATGCGACGCCAAGTTCTTCTTCCGAGCGGAGTTAGACAACCACGCCTTCGTACATCTAGAAGAAGCTGAGATAGCTCAACGAGCGTTCTACGAAGCATACGCTCGAGGAGCGGCTGCGTGGGCCGCGCTCGCTCCACCTACCCCCGCGCCTGAATCTCACACTCCTGAGGTTAAACAGGAAGTCCACGTCAAAGAGGAACGAAACGATGAGTATATAGAAGTGTCATCTCCCCCTCCGCCTGTTTCACCTAAGAATGAAGTGCCCGTCGTTAAGCAGGAGAAACCTGATGAGGATGCTGAAGTTTAG
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHEVSSEDIKEALGSVGSAAGSSWPSSTPEPSPASTPSAEAADTDAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKREREGREPDRRRALRCLRCGEGFRRPDLLQAHMVTAHGVEVAALSPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHTALLNGEGPHGPEQPAPTDLSRRASDDVPLIKRPRSGTPQITMSPNTLLCNQCDAALPDFEAFRVHLKGHLESGGEPRTSPAPCVHCGATYADAAAAERHLTAHYLTASCEYTCHSCARTFPAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVSHSGESKVWMCRGCPGGAALGSAGAGAAHVAAAHGGARCSCGALLAPARLRPRAYACPAPACTDAFAVQYLLERHMQIHHAAAQQGMNGDTSRSKRVENNNGTDAGSCSPCMGGGDITPTGTEERRRKNGAVALQCAYCGERARTRAELEAHTRAHSTAAARHKCLICDEVLPSAAVLAEHKLTHCKVVVGDTCSVCRSRLVSEESFLGHMSRHHPALPAPCVVCRQTLASEPEARLHARFHLRVADDEQRCALCLRTLPAGSSGGGESARACAACYARHSAPRAPPSSSTTDHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCTRCDAKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAAAWAALAPPTPAPESHTPEVKQEVHVKEERNDEYIEVSSPPPPVSPKNEVPVVKQEKPDEDAEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635642;
- 90% Identity
- -
- 80% Identity
- -