Asor016894.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apamea sordens
Gene Symbol
L
Assembly
GCA_945859755.1
Location
CAMAOQ010000042.1:3425838-3452260[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.7e-06 0.00014 22.9 1.7 1 23 85 107 85 107 0.99
2 16 0.73 61 5.2 5.8 1 23 113 135 113 135 0.97
3 16 9.8e-06 0.00082 20.5 4.1 1 23 141 163 141 163 0.99
4 16 3e-05 0.0025 18.9 0.1 1 23 169 191 169 191 0.98
5 16 0.0014 0.12 13.7 0.0 2 23 207 229 206 229 0.94
6 16 7 5.8e+02 2.1 0.1 9 23 260 275 256 275 0.93
7 16 0.35 29 6.2 0.0 3 23 327 347 326 347 0.97
8 16 0.19 16 7.0 0.0 3 23 361 381 360 381 0.91
9 16 0.00064 0.053 14.8 0.3 1 23 389 412 389 412 0.95
10 16 0.11 9.5 7.7 0.0 1 23 417 440 417 440 0.92
11 16 0.016 1.3 10.4 0.1 1 23 501 525 501 526 0.94
12 16 0.00023 0.019 16.2 0.1 2 23 589 610 588 610 0.96
13 16 0.067 5.6 8.4 0.0 1 23 618 640 618 640 0.97
14 16 1 85 4.7 0.3 1 23 744 766 744 766 0.94
15 16 0.004 0.34 12.3 0.1 1 20 774 793 774 796 0.95
16 16 0.18 15 7.1 0.3 1 23 803 825 803 825 0.94

Sequence Information

Coding Sequence
ATGTTATTCAAAGGCAATAGCAGTCGGCTGGAGCACCTCATTGAGAAGATCCAGGCGAACAAAGAAAACCACGACGTCACGTCAGAGGATATAAAAGAGGCGCTGGGCAGCGTGGGCAGCACGGCGGGCAGCTCTTGGCCGTCGTCGACGCCGGAGCCGTCGCCGTCGCCGGCGTCCACGCCCACCTCGGCCGACGCCGCCGACCCCGAGGCCGAACCGCCCTTCACGCTCGGCGCCACCGAGCACACTCCTTACCAGTGCCAGTTTTGCGATAAAGCCTTCCCCAGGCTCTCTTATCTCAAGAAACATGAACAGACCCATTCGGATCAGATGCCATTTAGGTGTGAGTTCTGCTCGCGCCTGTTCAAGCACAAGCGTTCTCGCGACCGCCACGTTAAGCTACACACCGGAGATCGCAAGTACCGCTGCGCACATTGTGAATCTGCCTTCTCCAGGAGTGACCACTTGAAGATCCACATGAAGACACACGACAATCAGAAACCGTTCCAGTGTACTGTGTGCAACCGAGGGTACAACACCGCAGCCGCTCTGACGTCACACATGCAGGGACATAAGAGAGACCGCGAGGGTCGTGAACCTGATAGGCGCAGGGCTTTGCGCTGTCTGCGATGTGGAGACGCCTTCCGACGACCAGACCTGTTGCAGgccCACATGGTGAGTGCTCATGGCGTCGACACAGCAGCTATGACTCCACCGCGACGCGTCGCTTCTCAGCCGCCGCCCACACTACTCGCCTGCATCTACTGCACTCGCGACACCTTCACCAGCATGGAACAACTACAACTCCACGTGCGAGCAGCACACTCAGCGCTGCTTAACGGCGAAGGGCCAGTTCAAGTTGATCAGCCTTTACCCACTGATCTAAGCCGACGGGCACCTGACGATGTGCCCCCAGTCAAACGTCCTCGCTCCGGATCCGGCACGCCACAAACAACCTTATCACCGAGCACACTTCTCTGCAATCAATGTGATGCTGCGCTCCCAGATTTTGAAGCATTTCGGGCTCATTTGAAAGGGCATATTGAAGAAGGAGGGGAGCTACGATCCAGTCCTGCGCCTTGCGTTCACTGTGGAGCTACGTTTGCGGATGCTGCAGCGTCTGAGCGTCACCTCACGGCACATTACTTGGCAGTCTCGTGCGAGTACACCTGCCACAGTTGCGCTCGGAGCTTCGCTGCTCCTGATGACTTGCAGAAACATCTTCTTGAACTGCATGCGCATCACTTGTATAGATGCGCTCTTTGCAAGGAGATTTTTGATTCGAAAGTTGCAATTCAGGTACACTTTGCAGTAGCTCATAGTGGTGAAAACAAAGTCTGGGTGTGTCGTTCTTGCGGAGCGGGCGCGGGTGCTCTTCAATCGGAGGCCGAGGGCGCCGCTCACGTACGCTCTCGTCACGCGGCTGCAGCCCCACGATGTGCCTGCGGAGCCCTACTTGGCAGTGGGGTGGCCGCGAGGACCCCTAGACCACATCGCGCGTATCGGTGTCCCGTGCCTGCCTGCAATGATGCATTTGCTGTGCAGTACTTGCTCGAAAGACACATGCAGGCTCATCATGCAATGCAACAGCAGGTTCTTAATGGAGAATTACCAAGAACAAAAAGAATGGACTCCACCAACGGAGGCGAGGGTGGTGACGACGCACGATCTCCGTGTACCCCGACAGCTGACAGCGGCGGAGTGACCACTGCGGTGGTGGCCGCCAGTGAGGAGCGGCGGCGGAAGAACGGCGCCGTCGCGCTGCAGTGTGCGTACTGTGGGGAGCGCACGCGCAGCCGGGCAGAACTAGAAGCGCACACGCGAGCACATTCTGGAGCCGCGGCGGCGAGACACAAGTGTCTGATCTGCGATGAGGTGCTGCCGTCTGCTGCAGTATTGGCGGAACATAAGCTCACACATTGcaagGTGGTATCAGGTGACACGTGCTCCCGCTGCCGCGCTCGGCTTCTATCCGAGGAGTCGTTCCTGTCACACATGGCGCGCCACCACCCCGCGTTGCCGGCGCCCTGCGTGGTGTGCCGCCAGACGCTGGCGTCCGAGCCCGAGGCGCGCCTGCACGCGCGCTTCCATCTGCGGCCCGGGGAGGACGAGCAGAGATGCGCCATATGTCTCCGCGCCCTGCCGGAGGGCGAGGCAGGCGAGGGCGCGCGCGCTTGCTCGGCGTGCTACGCGCGCCACGCGGCCCCGCGCGCGCCTGCGCCCGCCGACCACGACTGCCGCCTGTGCCGCCGCGCGCTGGGCTCACCCACGCGCCTGCAGGCGCACCTCATCGAGCACACGTTCGCGGGCATCGGCGCCTTCACCTGCTACCTGTGCTCCGCCGTGTTCACGAGCGCCGCCGGCCTGCAGCGCCACCTGCCCGAGCACGCGTCCGCGCCCAGACCTTACGATTGCGCTCGATGCGGACTAAAGTTCTTCTTCCGAGCTGAACTTGATAACCACGCCTTCGTGCATCTTGAAGAGGCAGAGATTGCGCAACGAGCTTTCTATGAGGCGTACGCTCGCGGTGCTGCGTCCGCGTGGGCCGCTTTAGCACCGCCGGAGCCTCGAACGACTCCACCCCAAGCCGAGGTCAAGCGTGAGCCGGAGATCAAAGAGGAGCGAGGAACTGACGAGTATATAGAAGTGTCGTCGCCTCTCCCCGCGCCCCCTCCGCCCGCTCCTCCCGCGCCGCCCTCGCCCGCTCCTGTCGTGAAACTAGAGAAGCCTGACGAGGAGTGA
Protein Sequence
MLFKGNSSRLEHLIEKIQANKENHDVTSEDIKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADPEAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMVSAHGVDTAAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEGPVQVDQPLPTDLSRRAPDDVPPVKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGELRSSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFAAPDDLQKHLLELHAHHLYRCALCKEIFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALQSEAEGAAHVRSRHAAAAPRCACGALLGSGVAARTPRPHRAYRCPVPACNDAFAVQYLLERHMQAHHAMQQQVLNGELPRTKRMDSTNGGEGGDDARSPCTPTADSGGVTTAVVAASEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCSRCRARLLSEESFLSHMARHHPALPAPCVVCRQTLASEPEARLHARFHLRPGEDEQRCAICLRALPEGEAGEGARACSACYARHAAPRAPAPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPRTTPPQAEVKREPEIKEERGTDEYIEVSSPLPAPPPPAPPAPPSPAPVVKLEKPDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00635642;
90% Identity
iTF_00822228;
80% Identity
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