Pfla003499.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Perizoma flavofasciatum
Gene Symbol
L
Assembly
GCA_958496245.1
Location
OY292422.1:7396619-7404654[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.61 38 5.4 5.8 1 23 3 25 3 25 0.97
2 16 8.3e-06 0.00051 20.7 4.1 1 23 31 53 31 53 0.99
3 16 2.6e-05 0.0016 19.2 0.1 1 23 59 81 59 81 0.98
4 16 1.8e-05 0.0011 19.7 0.0 2 23 97 119 96 119 0.95
5 16 3 1.8e+02 3.2 0.3 3 23 143 165 141 165 0.79
6 16 0.29 18 6.4 0.0 3 23 215 235 214 235 0.97
7 16 0.16 9.9 7.2 0.0 3 23 250 270 249 270 0.91
8 16 7.1e-05 0.0043 17.8 0.6 1 23 278 301 278 301 0.94
9 16 0.027 1.6 9.7 0.1 1 23 306 329 306 329 0.92
10 16 0.0016 0.1 13.5 0.2 1 23 383 407 383 408 0.96
11 16 0.00098 0.06 14.2 0.0 2 23 463 484 462 484 0.96
12 16 0.16 9.9 7.2 0.0 1 23 492 514 492 514 0.97
13 16 3 1.8e+02 3.2 0.8 2 23 522 543 521 544 0.94
14 16 0.85 52 4.9 0.3 1 23 618 640 618 640 0.94
15 16 0.0034 0.21 12.5 0.1 1 20 648 667 648 670 0.95
16 16 0.041 2.5 9.1 0.5 1 23 677 699 677 699 0.94

Sequence Information

Coding Sequence
ATGCCGTTCCGGTGTGAATTTTGCTCGAGATTGTTCAAGCACAAGCGCTCCCGAGACCGACACGTGAAGCTGCACACTGGAGATAGGAAGTACCGCTGTGCACACTGTGAATCTGCATTTTCAAGAAGTGATCACCTGAAGATCCACATGAAAACCCACGACAACCAGAAGCCCTTCCAATGCACGGTGTGCAACCGGGGCTACAACACCGCTGCAGCCCTCACGTCACACATGCAGGGGCATAAACGCGAGAGGGAGGGCCGAGAGCCAGATCGCAGGAGGTCGTTGCGCTGCTTGCGCTGTGGGGAAGCTTTTCGACGACCTGATCTGCTGCAGGCTCACATGGCAAGCGCACACGGTGTCGATGCAGCAGCATTGACGCCCCCTCGTCGCGTGGCCTCCCAACCACCCCCCACTCTACTTGCCTGCATGTACTGCACTCGTGACACCTTCACGAGCATGGAGCAGCTGCAGTTACACGTGCGAGCCACTCACTCCGCGTTGCTTAACGGAGAGGCCATGCCAGTCGTCGACCAGCCAGCGCCGACTGACCTCAGCCGACGGGCTTCGGACGATGCACCGCCGGCGAAGCGTCCTCGTTCAGGAACTCCCCAGGCCATATTATCTCCCAACACGTTGCTTTGCAATCAGTGTGACGCAGCTCTGCCAGATTTCGAAGCATTCCGCGCTCATTTGAAAGCGCATCTCGATGAAGGTGGAGAGTTGACAAGAACAAGCCCAGCTCCTTGCGTCCACTGCGGAGCGACGTTCGCTGATGCGGCAGCTTCCGAGCGGCATCTGACCGCTCATTACCTGGCGGTTTCCTGCGAGTATAGTTGCCACAGTTGCGCGAGAAGCTTTCCGACGCCTGATGATCTACAGAAGCATCTGTTGGATCTGCACGCTCAGCATCTATACCGTTGTACGCTTTGTAAGGAGATCTTTGACTCCAAAGTTGCGATTCAGGTTCATTTTGCCGTTGCGCATAGCGGTGAAAACAAAGTGTGGGTGTGCCGTGGTTGCGGCAGCGGGGCGGGTGCGCTGCGCTCCGAGGCGGACGGGGTCGCCCACGTGCGCTCCAGGCACGGTGGCGCGCGATGCTCCTGCGGCGCTTTGCTAGGCGGCCCGAGACTTCGCCCGCGGGCGTACCGGTGCCCCGTGCCGACATGCTCTGATGCCTTCGCGGTCCAGTACCTCCTGGAGCGGCATATGCAAGTCCATCATTCTATGGCACAACAGGTGTTGAACGGAGAGCTGAATAGGCCAAAGCGCGTTGAGAACAATAACGTCACAGAAGCCGAAGGCACCTGCTCACCATGTAACACGACTGAGCCAAGCATTCCCGGGGGCGAAGAGCGGAGAAGGAAGAACGGCGCTGTGGCACTGCAGTGTGCGTACTGCGGAGAGAGGGCCCGGAGTCGAGCGGAACTAGAGGCACATACGAGGGCTCACTCTGGAGCGGCGGCTGCAAGACACAAGTGCCTCATTTGCGATGAGATCCTGCCGTCCGCTGCGGTGTTGGCTGAGCACAAACTTACACACTGCAAGGTGGTGGCAGGCGACACTTGCTCGCGCTGCCGAGCGCGGCTGGTGTCGGAGGAGTCGTTCCTGGGGCACATGGCGCGGCATCACCCCGCGCTGCCAGCGCCCTGCGTCGTCTGCCGCCAGACGCTCGCCTCCGAGGCCGAGGCGCGGCTGCACGCGCGCTTCCACCTTCGCCCCAATGACGATGAACAGAGGTGCGCAATCTGCCTCCGAGCTCTGCCGGAAGGGGAAGGCGGGGAGGGTGCGCGCGCGTGCTCGGCGTGCTACGCGCGGCATGCGACCCCGCGCCCCGCCGCGCCCTCCGACCACGACTGCCGACTATGCCGCCGAGCTCTCGGCTCCCCCACAAGGCTACAAGCCCATCTCATCGAGCATACCTTCGCCGGCATCGGCGCTTTTACTTGCTACCTGTGCTCGGCTGTGTTCACCAGTGCGGCCGGCCTGCAGCGGCATCTACCCGAGCACTCGTCTGCGCCTAGACCGTACGACTGCACCCGCTGTGGCATCAAATTCTTCTTCCGCGCTGAGCTAGACAACCATGCCTTCGTACATTTAGAAGAAGCTGAGATAGCGCAGCGAGCCTTCTACGAAGCGTATGCGCGGGGAGCGGCTAGCGCCTGGGCCGCACTCGCTCCAGAACTACCTCCTGTCAGCACACCGGTGCCGGAAGTGAAGCAGGAACCGGAGATAAAGGAGGAGCGGAATGATGAGTACATCGAAGTGGCTTCACCACCGCCGTCCATTCCATCACAACCCCCTGCACTCTCGACTCCACCTCTCGTGGTTAAACAGGAGAAGCCTGATGAAGACTGA
Protein Sequence
MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKREREGREPDRRRSLRCLRCGEAFRRPDLLQAHMASAHGVDAAALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRATHSALLNGEAMPVVDQPAPTDLSRRASDDAPPAKRPRSGTPQAILSPNTLLCNQCDAALPDFEAFRAHLKAHLDEGGELTRTSPAPCVHCGATFADAAASERHLTAHYLAVSCEYSCHSCARSFPTPDDLQKHLLDLHAQHLYRCTLCKEIFDSKVAIQVHFAVAHSGENKVWVCRGCGSGAGALRSEADGVAHVRSRHGGARCSCGALLGGPRLRPRAYRCPVPTCSDAFAVQYLLERHMQVHHSMAQQVLNGELNRPKRVENNNVTEAEGTCSPCNTTEPSIPGGEERRRKNGAVALQCAYCGERARSRAELEAHTRAHSGAAAARHKCLICDEILPSAAVLAEHKLTHCKVVAGDTCSRCRARLVSEESFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNDDEQRCAICLRALPEGEGGEGARACSACYARHATPRPAAPSDHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHSSAPRPYDCTRCGIKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPELPPVSTPVPEVKQEPEIKEERNDEYIEVASPPPSIPSQPPALSTPPLVVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00635642;
90% Identity
iTF_01429280;
80% Identity
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