Gfla002099.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gortyna flavago
Gene Symbol
L
Assembly
GCA_963669345.1
Location
OY770126.1:12569318-12583336[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.7e-06 0.00014 22.9 1.7 1 23 61 83 61 83 0.99
2 16 0.71 58 5.2 5.8 1 23 89 111 89 111 0.97
3 16 9.6e-06 0.00078 20.5 4.1 1 23 117 139 117 139 0.99
4 16 3e-05 0.0024 19.0 0.1 1 23 145 167 145 167 0.98
5 16 0.0014 0.11 13.8 0.0 2 23 183 205 182 205 0.94
6 16 6.8 5.5e+02 2.1 0.1 9 23 236 251 232 251 0.93
7 16 0.34 28 6.2 0.0 3 23 303 323 302 323 0.97
8 16 0.19 15 7.0 0.0 3 23 337 357 336 357 0.91
9 16 0.00062 0.051 14.8 0.3 1 23 365 388 365 388 0.95
10 16 0.11 9 7.7 0.0 1 23 393 416 393 416 0.92
11 16 0.016 1.3 10.4 0.1 1 23 477 501 477 502 0.94
12 16 0.00022 0.018 16.2 0.1 2 23 565 586 564 586 0.96
13 16 0.066 5.3 8.5 0.0 1 23 594 616 594 616 0.97
14 16 0.99 80 4.8 0.3 1 23 720 742 720 742 0.94
15 16 0.004 0.32 12.3 0.1 1 20 750 769 750 772 0.95
16 16 0.17 14 7.1 0.3 1 23 779 801 779 801 0.94

Sequence Information

Coding Sequence
ATGGGACCCACTACCGAGCCGGCGGAGGCGCTGGGCAGCGTGGGCAGCACGGCAGGCAGCTCTTGGCCGTCGTCGACGCCGGAGCCGTCGCCGTCGCCGGCGTCCACGCCCACCTCGGCCGACGCCGCCGACGCCGAGGCCGAGCCGCCCTTCACGCTCGGCGCCACCGAGCACACCCCTTACCAGTGCCAGTTCTGCGATAAAGCCTTCCCGAGGCTCTCTTATCTCAAGAAACATGAACAGACCCATTCGGATCAAATGCCGTTCAGGTGTGAGTTCTGCTCGCGCCTGTTCAAGCACAAGCGTTCTCGCGACCGCCACGTTAAGCTACACACCGGAGATCGCAAGTACCGCTGCGCACATTGTGAATCTGCCTTCTCCAGAAGTGACCACTTGAAGATCCACATGAAGACGCACGACAATCAGAAGCCGTTCCAGTGCACCGTTTGCAACCGAGGGTATAACACCGCAGCCGCTCTGACGTCACACATGCAGGGACATAAGAGAGACCGTGAGGGTCGCGAGCCCGATAGGCGCAGGGCTTTGCGCTGTCTGCGATGTGGAGATGCCTTCCGACGACCAGACCTGTTACAGGCCCACATGGTGAGCGCACACGGCGTCGACACAGCAGCTATGACTCCACCGCGCCGCGTCGCTTCTCAGCCGCCGCCCACACTACTCGCCTGCATCTACTGCACTCGCGACACCTTCACCAGCATGGAACAGTTACAACTCCACGTGCGAGCAGCGCACTCAGCGCTGCTTAACGGCGAAGGGCCAGTTCAAATTGATCAGCCTTTGCCAACTGACCTAAGCCGACGGGCACCTGATGAAGTGCCCCCAGTCAAACGTCCTCGCTCCGGATCGGGCACGCCACAAACAACCTTATCAACGAGCACACTTCTCTGCAATCAATGTGATGCTGCGCTCCCAGATTTTGAAGCATTTCGGGCTCATTTGAAAGGGCATATAGAAGAAGGAGGGGAGCTGCGATCAAGTCCTGCGCCTTGCGTTCACTGTGGGGCTACGTTTGCGGATGCTGCAGCGTCTGAGCGTCACCTCACGGCACATTACTTGGCAGTCTCTTGCGAGTACACCTGCCACAGTTGCGCTCGGAGCTTCGCTGCTCCTGATGATTTGCAGAAACATCTTCTTGAACTGCACGCGCATCACTTGTATAGATGCGCTCTTTGCAAGGAGATTTTTGATTCGAAAGTTGCAATTCAGGTTCACTTCGCAGTAGCTCATAGTGGTGAAAACAAAGTCTGGGTGTGTCGTTCTTGCGGAGCGGGCGCGGGTGCTCTCCGCTCGGAGGCCGAGGGCGCCGCCCACGTACGCTCTCGTCACGCGGCCGCAGTCCCACGATGTGCCTGCGGAGCCCTACTTGGCAGTGGAGTGGCCGCGAGGACACCTAGACCACATCGCGCGTATCGGTGTCCCGTGCCTGCCTGCAATGATGCATTTGCTGTGCAGTACTTGCTCGAAAGACACATGCAGGCTCATCATGCAATGCAACAACAGGTTCTTAACGGAGAATTACCAAGAACAAAAAGAATGGACTCCACCAACGGAGGCGAGGGCGGTGACGACGCTCGGTCTCCATGCACCCCGACCGCTGACGGCGGCGGAGTGACCACTGCGGTGGTGGCCGCTAGTGAGGAGCGGCGGCGCAAGAACGGCGCCGTCGCGCTGCAGTGTGCGTACTGCGGGGAGCGCACGCGCAGCCGGGCCGAACTAGAGGCGCACACACGAGCACATTCTGGGGCCGCGGCGGCGAGGCACAAGTGTCTGATCTGCGATGAGGTGCTGCCGTCTGCGGCAGTGTTGGCGGAACATAAGCTCACACATTGCAAGGTGGTATCAGGCGACACGTGCTCCCGCTGCCGCGCTCGGCTCCTGTCCGAGGAGTCGTTCCTGTCGCACATGGCGCGCCACCACCccgcgctgccggcgccctgCGTGGTGTGCCGACAGACGCTGGCGTCCGAGCCCGAGGCGCGCCTGCACGCGCGCTTCCATTTGCGGCCCGGAGAGGACGAGCAGAGATGCGCCATATGCCTCCGCGCGCTCCCGGAGGGTGCGGGCGGCGAGGGCGCGCGCGCTTGCGCGGCGTGCTACGCGCGCCAcgcggcgccgcgcgcgccgccgcccgccgaACACGACTGCCGCCTGTGCCGCCGGGCGCTGGGATCGCCCACGCGCCTGCAGGCGCACCTCATCGAGCACACGTTCGCCGGCATCGGCGCCTTCACCTGCTACCTGTGCTCCGCCGTGTTCACGAGCGCCGCCGGCCTGCAGCGCCACCTGCCCGAGCACGCGTCCGCGCCCAGACCTTACGACTGCGCACGATGCGGACTTAAGTTCTTCTTCCGAGCTGAACTTGATAACCACGCCTTCGTGCATCTTGAAGAGGCAGAGATTGCGCAACGAGCTTTCTATGAGGCTTACGCCCGCGGTGCTGCGTCCGCGTGGGCCGCTTTAGCACCGCCGGAGCCTCGGACGACTCCACCTCAACCCGAGGTCAAGCGTGAGCCGGAGATCAAAGAGGAGCGAGGAACTGACGAGTATATAGAAGTGTCGTCCCCTCCCCCCGCGCCTCCTCCGCCCGCTCCTCCCGCACCGCCCTCGCCTGCTCCTGTCGTGAAACTAGAGAAGCCTGACGAGGAGTGA
Protein Sequence
MGPTTEPAEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADAEAEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMVSAHGVDTAAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEGPVQIDQPLPTDLSRRAPDEVPPVKRPRSGSGTPQTTLSTSTLLCNQCDAALPDFEAFRAHLKGHIEEGGELRSSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFAAPDDLQKHLLELHAHHLYRCALCKEIFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGAAHVRSRHAAAVPRCACGALLGSGVAARTPRPHRAYRCPVPACNDAFAVQYLLERHMQAHHAMQQQVLNGELPRTKRMDSTNGGEGGDDARSPCTPTADGGGVTTAVVAASEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCSRCRARLLSEESFLSHMARHHPALPAPCVVCRQTLASEPEARLHARFHLRPGEDEQRCAICLRALPEGAGGEGARACAACYARHAAPRAPPPAEHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPRTTPPQPEVKREPEIKEERGTDEYIEVSSPPPAPPPPAPPAPPSPAPVVKLEKPDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00635642;
90% Identity
iTF_00822228;
80% Identity
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