Ecre007741.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ectropis crepuscularia
Gene Symbol
L
Assembly
GCA_963693475.1
Location
OY856341.1:17012810-17021792[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.59 84 5.4 5.8 1 23 3 25 3 25 0.97
2 16 8e-06 0.0011 20.7 4.1 1 23 31 53 31 53 0.99
3 16 2.5e-05 0.0035 19.2 0.1 1 23 59 81 59 81 0.98
4 16 8.5e-06 0.0012 20.6 0.1 2 23 97 119 96 119 0.96
5 16 2.6 3.7e+02 3.4 0.2 3 23 142 164 140 164 0.79
6 16 0.29 40 6.4 0.0 3 23 213 233 212 233 0.97
7 16 0.014 2 10.5 0.0 3 23 248 268 247 268 0.95
8 16 0.0026 0.37 12.8 0.2 1 23 276 299 276 299 0.93
9 16 0.031 4.3 9.5 0.1 1 23 304 327 304 327 0.92
10 16 0.024 3.4 9.8 0.1 1 23 381 405 381 406 0.93
11 16 0.00094 0.13 14.2 0.0 2 23 463 484 462 484 0.96
12 16 0.055 7.7 8.7 0.0 1 23 492 514 492 514 0.98
13 16 2.9 4.1e+02 3.2 0.8 2 23 522 543 521 544 0.92
14 16 0.82 1.2e+02 5.0 0.3 1 23 621 643 621 643 0.94
15 16 0.0033 0.47 12.5 0.1 1 20 651 670 651 673 0.95
16 16 0.84 1.2e+02 4.9 0.5 1 23 680 702 680 702 0.94

Sequence Information

Coding Sequence
ATGCCGTTTCGATGTGAGTTCTGCTCGAGGCTGTTCAAGCACAAGCGGTCGAGAGATCGGCACGTCAAGCTGCACACCGGGGACCGCAAGTATCGCTGCGCGCACTGCGAGTCCGCCTTCTCCAGGAGCGACCATTTGAAAATCCACATGAAGACACACGACAATCAGAAGCCGTTCCAATGCACGGTGTGCAACCGAGGGTACAACACGGCGGCGGCGCTGACCTCGCACATGCAGGGCCACAAGCGGGAGCGGGAGGGCCGCGAGCCAGACCGGCGGAGGGCCCTGCGCTGTTTGACCTGCGGCGAGGGATTCAGGAGACCAGACCTCTTACAGGCCCACATGACGACAGCCCACGGCGTGGACGCGGCGCTGACTCCGCCACGGCGCGTGGCCTCTCAGCCGCCGCCGACTCTACTAGCCTGCATGTACTGTACTCGAGACACCTTCACCAGCATGGAACAACTACAGCTCCACGTCCGCGCCGCCCACTCCGCGCTCCTCAACGGCGAGGGTTTGATCGACCAGCCCGCCCCCACCGACCTCAGCCGACGAGCCTCCGACGAGATACCCACCAAGCGACCTCGCTCCGGCTCCGAAACGCCACAAATCACACTATCCCCGAACACGCTGTTATGTAACCAGTGCGATGCAGCTCTACCGGACTTTGAAGCCTTTCGCGCCCATCTAAAAGGGCATTTAGAGGAAGGTGGAGAGTTGACGCGTACGAGCCCAGCCCCGTGTGTGCATTGTGGGGCTACCTTCGCGGATGCGGCGGCCGCTGAGAGGCACCTGTCTGCTCACTACCTGGCGGTGTCGTGCGAGTACGCGTGCCATAGCTGCGCGCGCACGTTCCCCGCGCCCGATGACCTGCAGAAACATCTACTGGATCTCCACGCGCATCATCTCTACCGCTGCTCCTTGTGCAAGGAGATTTTCGACTCGAAAGTCGCTATTCAGGTCCATTTCGCGGTGGCGCACAGCGGCGAGAGCAAGGTGTGGGTGTGTCGCGgctgcggcggcgcggcgggcgcaCTGCGGTCGGAGGCGGAGGGCGCGGCGCACGTGCGGGCCGCGCACGGCGGCGCGCGGTGCGCGTGCGGCGCGCTGCTGGCCGGCGCGCGCCTGCGCCCGCGCGCCTACCGCTGCCCCGCGCCCGCCTGCACCGACGCCTTCGCTGTGCAGTACCTGCTAGAACGACACATGCAGCTACACCACACCGTACCGCACCAGGTGCTGAACGGTGAACCGACGCGACCGAAGCGTGCAGAGAATAACAACGGCACAGAAGCTGAAGGCGCATGTTCTCCCTGCGGAGAAGGCACCGGTGCCGCGGGGGGAGGTGGAGGGGAGGAGCGGCGCCGCAAGAACGGCTCGGTGGCGCTTCAATGCGCGTACTGTGGCGAACGCGCGCGCTCACGGGCCGAGCTAGAGGCgcacacgcgcgcgcactccggcgccgccgccgccaggCACAAGTGCCTCATCTGCGACGAAGTACTGCCCTCGGCGGCAGTACTGGCTGAACACAAACTCACTCACTGCAAGGTTGTGTGCGGCGACACGTGCGCGCGCTGCCGCTCGCGGCTGGTCTCCGAGGAGTCGTTCCTGGCGCACATGGCGCGCCACCACCCGGCGCTGCCGGCGCCCTGCGTCGTCTGCCGCCAGACGCTGGCGTCCGAGCCCGAGGCGCGCCTCCACGCCCGCTTCCATCTCCGACCGGCGGACGACGAACAGAGATGCGCGTTATGCCTGCGCGCGCTAGGGGAGGGcgagggcgcgggcgcgggcggcggcgcgcgcgcatgcGCCGCGTGCTACGCGCGTCACGCCgccccgcgcgcgccgcccgccgccgacCACGACTGCCGCCTGTGTCGCCGTGCGCTCGGCTCTCCCACCAGACTGCAGGCTCACTTGATAGAGCACACTTTCGCCGGCATAGGAGCGTTCACTTGCTACCTTTGCTCGGCCGTGTTCACATCGGCCGCTGGGCTTCAACGGCATCTACCGGAGCACGCCGCTGCGCCGCGCCCCTACGACTGTGGACGATGCTCCCTCAAGTTCTTCTTCAGAGCAGAACTTGATAACCACGCCTTCGTACATCTAGAAGAAGCGGAAATCGCACAGCGAGCCTTCTACGAAGCGTACGCGCGAGGAGCGGCCTCGGCCTGGGCAGCGTTAGCTCCGCCCGACCCGGCCGAACCACGGACAGAAACAGAAGTGAAACAAGAAATCAAAGAGGAACGTAACGATGAATACATAGAGGTGGCCTCTCCGCCTCCCGCGTCCAAAGACTCTTTAACCGAAGAAGTTCCAGTTGTGAAGCAAGAAAAGCCTGATGAAGATTGA
Protein Sequence
MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKREREGREPDRRRALRCLTCGEGFRRPDLLQAHMTTAHGVDAALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHSALLNGEGLIDQPAPTDLSRRASDEIPTKRPRSGSETPQITLSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGELTRTSPAPCVHCGATFADAAAAERHLSAHYLAVSCEYACHSCARTFPAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGESKVWVCRGCGGAAGALRSEAEGAAHVRAAHGGARCACGALLAGARLRPRAYRCPAPACTDAFAVQYLLERHMQLHHTVPHQVLNGEPTRPKRAENNNGTEAEGACSPCGEGTGAAGGGGGEERRRKNGSVALQCAYCGERARSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVCGDTCARCRSRLVSEESFLAHMARHHPALPAPCVVCRQTLASEPEARLHARFHLRPADDEQRCALCLRALGEGEGAGAGGGARACAACYARHAAPRAPPAADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCGRCSLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPDPAEPRTETEVKQEIKEERNDEYIEVASPPPASKDSLTEEVPVVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00635642;
90% Identity
iTF_00926852;
80% Identity
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