Basic Information

Insect: Alcis repandata
Gene Symbol: L
Assembly: GCA_949125135.1
Location: OX421223.1:8104512-8108544[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.59 47 5.4 5.8 1 23 3 25 3 25 0.97

2 16 7.9e-06 0.00063 20.7 4.1 1 23 31 53 31 53 0.99

3 16 2.4e-05 0.0019 19.2 0.1 1 23 59 81 59 81 0.98

4 16 4.3e-05 0.0034 18.4 0.0 2 23 97 119 96 119 0.92

5 16 2.6 2.1e+02 3.3 0.2 3 23 143 165 141 165 0.79

6 16 0.28 22 6.4 0.0 3 23 220 240 219 240 0.97

7 16 0.018 1.4 10.1 0.0 3 23 255 275 254 275 0.94

8 16 0.00093 0.074 14.2 0.3 1 23 283 306 283 306 0.95

9 16 0.03 2.4 9.4 0.1 1 23 311 334 311 334 0.92

10 16 0.011 0.91 10.8 0.1 1 23 388 412 388 413 0.93

11 16 0.00093 0.074 14.2 0.0 2 23 473 494 472 494 0.96

12 16 0.054 4.3 8.6 0.0 1 23 502 524 502 524 0.98

13 16 0.94 75 4.7 0.5 2 23 532 553 531 554 0.93

14 16 0.82 65 4.9 0.3 1 23 631 653 631 653 0.94

15 16 0.0033 0.26 12.5 0.1 1 20 661 680 661 683 0.95

16 16 0.83 66 4.9 0.5 1 23 690 712 690 712 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.59	47	5.4	5.8	1	23	3	25	3	25	0.97
2	16	7.9e-06	0.00063	20.7	4.1	1	23	31	53	31	53	0.99
3	16	2.4e-05	0.0019	19.2	0.1	1	23	59	81	59	81	0.98
4	16	4.3e-05	0.0034	18.4	0.0	2	23	97	119	96	119	0.92
5	16	2.6	2.1e+02	3.3	0.2	3	23	143	165	141	165	0.79
6	16	0.28	22	6.4	0.0	3	23	220	240	219	240	0.97
7	16	0.018	1.4	10.1	0.0	3	23	255	275	254	275	0.94
8	16	0.00093	0.074	14.2	0.3	1	23	283	306	283	306	0.95
9	16	0.03	2.4	9.4	0.1	1	23	311	334	311	334	0.92
10	16	0.011	0.91	10.8	0.1	1	23	388	412	388	413	0.93
11	16	0.00093	0.074	14.2	0.0	2	23	473	494	472	494	0.96
12	16	0.054	4.3	8.6	0.0	1	23	502	524	502	524	0.98
13	16	0.94	75	4.7	0.5	2	23	532	553	531	554	0.93
14	16	0.82	65	4.9	0.3	1	23	631	653	631	653	0.94
15	16	0.0033	0.26	12.5	0.1	1	20	661	680	661	683	0.95
16	16	0.83	66	4.9	0.5	1	23	690	712	690	712	0.94

Sequence Information

Coding Sequence: ATGCCGTTCCGGTGCGAGTTTTGCTCACGGCTGTTCAAACACAAGCGGTCGCGGGACCGCCACGTCAAGCTGCACACCGGCGACCGCAAGTACCGCTGCGCGCACTGCGAGTCTGCCTTCTCCAGGAGTGACCACTTGAAGATCCATATGAAGACACACGACAATCAGAAGCCATTCCAGTGTACAGTATGCAATCGCGGGTACAACACAGCAGCTGCACTCACGTCCCATATGCAGGGCCACAAACGAGAGCGGGAGGGCCGCGAGCCCGACAGGAGGAGGGCCCTTCGCTGCTTGAGATGTGGAGAAGCTTTCAGGAGGCCTGATTTGTTgcagGCTCACATGGCAGCAACCCACGGCGTGGACGCTGCAGCGCTGACTCCACCGCGACGCGTGGCCTCGCAGCCACCACCGACGCTGCTCGCCTGCATGTACTGCACGCGCGATACCTTTACCAGCATGGAGCAGCTACAGTTGCACGTGCGTGCGGCCCATTCAGCGCTGCTTAACGGCGAAGGCGCTTTGTCACAGGGCGTGGACCAACCCGCGCCCACCGACCTCAGCCGGCGAGCGTCCGACGATATACCGCCACCAAGCAAGCGGCCGCGCTCTGGCTCCGGGACGCCACAGATCACTTTGTCCCCGAACACTCTACTCTGCAATCAATGCGACGCCGCTTTGCCGGACTTCGAAGCGTTCCGTGCTCATTTGAAAGGACACTTAGAAGAGGGCGGGGAGCTAACGCGAACGAGCCCGGCGCCGTGCGTACACTGCGGCGCCACGTTCGCggacgcggcggcggccgagcgTCACCTCACGGCGCATTACCTCGCCGTCTCCTGCGAGTACTCGTGCCACAGCTGCGCACGGAGCTTTCCAGCTCCCGATGACCTGCAGAAACATTTGTTGGAGCTGCACGCCCATCATCTTTATCGCTGCTCATTGTGCAAGGAGATCTTCGACTCGAAAGTTGCCATTCAGGTTCATTTTGCGGTAGCGCACAGCGGCGAGAACAAGGTATGGGTTTGCCGGGGATGCGGCAGTGGTGCGGGCGCGCTTCGCTCCGAGGCGGAAGGCGCGGCGCACGTGCGCGCGGCTCACGGAGGCGCGCGGTGCGCGTGCGGCGCGCTGCTGGGCGGGCCGCGCCTGCGCCCGCGCGCCTACCGCTGCCCCGTTCCCGCTTGTACCGACGCCTTCGCCGTGCAGTACCTGCTCGAGCGGCACATGCAGGTCCACCACGCCGTGCCGCATCAGATATTGAACGGCGAACTGACCCGGCCGAAGCGTGCGGAGAATAACAACGGCACAGAAGCGGAGGGTGCGTGCTCTCCGTGCGGTGGGGGTGGTGAAGGAGCCCCGGTCACGGGCTCGGGGGGCGGAGAGGAACGGAGACGGAAGAACGGTTCGGTGGCGTTGCAGTGCGCGTACTGCGGCGAGCGCGCGCGCTCCCGCGCCGAGCTGGAGGCGCACACGCGCGCGCACTCCGGTGCCGCCACGGCGCGACACAAGTGCCTCATTTGCGATGAGGTGCTGCCCTCTGCTGCCGTACTCGCAGAGCACAAGCTTACGCACTGCAAGGTGGTGTGTGGCGATACGTGCGCGCGATGCCGTGCGCGGCTGGTGTCCGAGGAGTCATTCCTAGCGCACATGGCGCGCCACCACCCCGCGCTGCCTGCACCCTGCGTCGTGTGCCGCCAGACGCTCGCCTCTGAGCCCGAGGCGCGTCTGCACGCACGCTTCCATCTTAGACCGGCCGATGACGAACAGAGATGTGCGCTATGCCTGCGTGCTCTGGGCGAGGGTGAGGGTAGTGGcgcaggcggcggcgcgcgcgcttgCGCCGCGTGCTACGCGCGTCACGCTGCaccgcgcgcgccgcctcctGCCGACCACGACTGCCGACTCTGCCGCCGCGCACTCGGCTCACCTACCAGGCTTCAGgCGCATTTGATAGAACACACATTCGCCGGCATCGGCGCGTTCACCTGCTACCTGTGCTCCGCCGTGTTCACGTCGGCCGCGGGCCTGCAGCGGCACCTCCCCGagcacgccgccgcgccgcgcccctaCGACTGCGGCCGGTGCTCGCTCAAGTTCTTCTTCCGAGCTGAACTAGATAACCACGCCTTTGTGCATTTGGAAGAAGCGGAGATCGCTCAACGAGCGTTCTACGAAGCCTACGCTCGAGGCGCTGCGACCGCGTGGGCCGCGCTCGCTCCTCCCGAGCCGGTCTCCGAGCCTCGCGACGCAGAGGTGAAACAGGAGATCAAAGAGGAGCGCAACGATGAGTACATAGAGGTGTCGTCTCCTCCCCCTCCCGCGTCGAAAGATTCGCCCTCCGAGGAAGTTCCAGTTGTGAAGCAAGAGAAGCCTGATGAAGATTGA
Protein Sequence: MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKREREGREPDRRRALRCLRCGEAFRRPDLLQAHMAATHGVDAAALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHSALLNGEGALSQGVDQPAPTDLSRRASDDIPPPSKRPRSGSGTPQITLSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGELTRTSPAPCVHCGATFADAAAAERHLTAHYLAVSCEYSCHSCARSFPAPDDLQKHLLELHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWVCRGCGSGAGALRSEAEGAAHVRAAHGGARCACGALLGGPRLRPRAYRCPVPACTDAFAVQYLLERHMQVHHAVPHQILNGELTRPKRAENNNGTEAEGACSPCGGGGEGAPVTGSGGGEERRRKNGSVALQCAYCGERARSRAELEAHTRAHSGAATARHKCLICDEVLPSAAVLAEHKLTHCKVVCGDTCARCRARLVSEESFLAHMARHHPALPAPCVVCRQTLASEPEARLHARFHLRPADDEQRCALCLRALGEGEGSGAGGGARACAACYARHAAPRAPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCGRCSLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALAPPEPVSEPRDAEVKQEIKEERNDEYIEVSSPPPPASKDSPSEEVPVVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00635642;
90% Identity: iTF_00926852;
80% Identity: -