Aepo002811.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- L
- Assembly
- GCA_947507525.1
- Location
- OX382225.1:10920160-10924837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.55 39 5.4 5.8 1 23 3 25 3 25 0.97 2 15 7.4e-06 0.00052 20.7 4.1 1 23 31 53 31 53 0.99 3 15 2.3e-05 0.0016 19.1 0.1 1 23 59 81 59 81 0.98 4 15 0.001 0.075 13.9 0.0 2 23 97 119 96 119 0.94 5 15 5.2 3.7e+02 2.3 0.1 9 23 150 165 146 165 0.93 6 15 0.26 19 6.4 0.0 3 23 217 237 216 237 0.97 7 15 0.14 10 7.2 0.0 3 23 251 271 250 271 0.91 8 15 0.00048 0.034 15.0 0.3 1 23 279 302 279 302 0.95 9 15 0.085 6.1 7.9 0.0 1 23 307 330 307 330 0.92 10 15 0.012 0.85 10.6 0.1 1 23 391 415 391 416 0.94 11 15 0.00017 0.012 16.4 0.1 2 23 479 500 478 500 0.96 12 15 0.05 3.6 8.6 0.0 1 23 508 530 508 530 0.98 13 15 0.76 54 4.9 0.3 1 23 634 656 634 656 0.94 14 15 0.003 0.22 12.5 0.1 1 20 664 683 664 686 0.95 15 15 0.13 9.4 7.3 0.3 1 23 693 715 693 715 0.94
Sequence Information
- Coding Sequence
- ATGCCATTCAGGTGTGAGTTTTGCTCGCGCCTGTTCAAGCACAAGCGTTCTCGCGACCGCCACGTTAAGCTACACACCGGAGATCGCAAGTACCGCTGCGCACATTGTGAATCTGCCTTCTCCAGGAGTGACCATTTGAAGATCCACATGAAGACACACGACAATCAGAAGCCATTCCAGTGTACTGTGTGCAACCGAGGGTACAACACCGCAGCCGCTCTGACGTCACACATGCAGGGACATAAGAGGGACCGCGAGGGTCGCGAGCCTGATAGGCGCAGGGCTTTGCGCTGTCTGCGATGTGGAGACGCCTTCCGACGACCGGACCTGTTGCAGGCCCACATGGTGAGTGCTCATGGCGTCGACACAGCAGCTATGACTCCACCGCGACGCGTCGCGTCTCAGCCGCCGCCCACACTACTCGCCTGCATCTACTGCACTCGCGACACCTTCACCAGCATGGAACAGCTACAACTCCACGTGCGAGCAGCACACTCCGCGCTGCTTAACGGCGAAGGGCCAGTTCAAGTTGATCAGCCTTTACCCACTGATCTAAGCCGACGGGCACCTGACGAAGTGCCCCCAGTCAAACGTCCTCGCTCCGGATCTGGCACGCCACAAACAACCTTATCACCAAGCACACTTCTCTGCAATCAATGTGATGCTGCGCTCCCAGATTTTGAAGCATTTCGGGCTCATTTGAAAGGGCATATTGAAGAAGGAGGGGAGCTACGATCAAGTCCTGCGCCTTGCGTTCACTGTGGAGCTACGTTTGCGGATGCTGCAGCGTCTGAGCGTCACCTCACGGCACATTACTTGGCAGTCTCGTGCGAGTACACCTGCCACAGTTGCGCTCGGAGCTTCGCTGCTCCCGATGACTTGCAGAAACATCTTCTTGAACTGCATGCGCATCACTTGTATAGATGCGCTCTTTGTAAGGAGATTTTTGATTCGAAAGTTGCAATTCAGGTGCACTTCGCGGTAGCTCATAGTGGTGAAAATAAAGTCTGGGTGTGTCGTTCTTGCGGAGCGGGCGCGGGCGCTCTCCGCTCGGAGGCCGAGGGCGCCGCTCATGTACGCTCTCGTCACGCGGCTGCAGCCCCACGATGTGCCTGCGGAGCCCTACTTGGCAGTGGGGTGGCCGCGAGAACCCCTAGGCCACATCGCGCGTATCGGTGTCCCGTGCCTGCCTGCAATGATGCATTTGCTGTGCAGTACTTACTCGAAAGACACATGCAGGCTCATCATGCAATGCAACAGCAGGTTCTCAACGGAGAATTACCAAGAACAAAAAGAATGGACTCCACCAACGGAGGCGAGGGTGGTGACGACGCACGATCTCCGTGTACCCCGACAGCTGACAGCGGCGGAGTGACCACTGCGGTGGTGGCCGCCAGTGAGGAGCGACGGCGGAAGAACGGAGCCGTCGCGCTGCAGTGTGCGTACTGTGGGGAGCGCACGCGCAGCCGGGCAGAATTAGAGGCGCACACGCGAGCACATTCTGGAGCCGCGGCGGCGAGACACAAGTGTCTGATCTGCGATGAGGTGCTGCCGTCTGCTGCAGTGTTGGCGGAACATAAGCTCACACATTGCAAGGTGATATCAGGCGACACGTGCTCCCGCTGCCGCGCTCGGCTCCTATCCGAGGAGTCGTTCCTGTCGCACATGGCGCGCCACCACCCCGCGTTGCCGGCGCCCTGCGTGGTGTGCCGCCAGACGCTGGCGTCCGAGCCCGAGGCGCGCCTGCATGCGCGCTTCCATCTGCGGCCCGGGGAGGACGAGCAGAGATGCGCCATATGTCTTCGCGCCCTCCCGGAGAGCGAGGCAGGCGAGGGCGCGCGCGCTTGCTCGGCGTGCTACGCGCGCCACGCGGCCCCGCGCGCGCCTCCGCCCGCCGACCACGACTGCCGCCTGTGCCGCCGCGCGCTGGGCTCACCCACGCGCCTGCAGGCGCACCTCATCGAGCACACGTTCGCGGGCATCGGCGCCTTCACCTGCTACCTGTGCTCCGCCGTGTTCACGAGCGCCGCCGGCCTGCAGCGCCACCTGCCCGAGCACGCGTCCGCGCCCAGACCTTACGACTGCGCACGATGCGGACTCAAGTTCTTCTTCCGAGCTGAACTTGATAACCACGCCTTCGTGCATCTTGAAGAGGCAGAGATTGCGCAACGAGCTTTCTATGAGGCGTACGCTCGCGGTGCTGCGTCCGCGTGGGCCGCTTTAGCACCGCCGGAGCCTCGAACGAGTCCACCCCAAGCCGAGGTCAAGCGTGAGCCGGAGATCAAAGAGGAGCGAGGAACTGACGAGTATATAGAAGTGTCGTCGCCTCTCCCCGCGCCCCCTCCGCCCGCTCCTCCCTCGCCGCCCTCGCCCGTTCCTGTCGTGAAACTAGAGAAGCCTGACGAAGAGTGA
- Protein Sequence
- MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRALRCLRCGDAFRRPDLLQAHMVSAHGVDTAAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGEGPVQVDQPLPTDLSRRAPDEVPPVKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGELRSSPAPCVHCGATFADAAASERHLTAHYLAVSCEYTCHSCARSFAAPDDLQKHLLELHAHHLYRCALCKEIFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGAAHVRSRHAAAAPRCACGALLGSGVAARTPRPHRAYRCPVPACNDAFAVQYLLERHMQAHHAMQQQVLNGELPRTKRMDSTNGGEGGDDARSPCTPTADSGGVTTAVVAASEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVISGDTCSRCRARLLSEESFLSHMARHHPALPAPCVVCRQTLASEPEARLHARFHLRPGEDEQRCAICLRALPESEAGEGARACSACYARHAAPRAPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPRTSPPQAEVKREPEIKEERGTDEYIEVSSPLPAPPPPAPPSPPSPVPVVKLEKPDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635642;
- 90% Identity
- iTF_00822228;
- 80% Identity
- -