Basic Information

Insect: Agriopis marginaria
Gene Symbol: L
Assembly: GCA_932301435.1
Location: CAKOAR010000072.1:123462-131460[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.63 37 5.4 5.8 1 23 3 25 3 25 0.97

2 16 8.5e-06 0.0005 20.7 4.1 1 23 31 53 31 53 0.99

3 16 2.6e-05 0.0015 19.2 0.1 1 23 59 81 59 81 0.98

4 16 8.2e-06 0.00048 20.8 0.1 2 23 97 119 96 119 0.96

5 16 2.8 1.6e+02 3.3 0.2 3 23 143 165 141 165 0.79

6 16 0.3 18 6.4 0.0 3 23 219 239 218 239 0.97

7 16 0.019 1.1 10.1 0.0 3 23 254 274 253 274 0.94

8 16 0.0013 0.078 13.8 0.3 1 23 282 305 282 305 0.94

9 16 0.032 1.9 9.4 0.1 1 23 310 333 310 333 0.92

10 16 0.012 0.73 10.8 0.1 1 23 387 411 387 412 0.93

11 16 0.001 0.059 14.2 0.0 2 23 472 493 471 493 0.96

12 16 0.058 3.4 8.6 0.0 1 23 501 523 501 523 0.98

13 16 3.1 1.8e+02 3.2 0.8 2 23 531 552 530 553 0.92

14 16 0.87 52 4.9 0.3 1 23 630 652 630 652 0.94

15 16 0.0035 0.21 12.5 0.1 1 20 660 679 660 682 0.95

16 16 0.89 53 4.9 0.5 1 23 689 711 689 711 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.63	37	5.4	5.8	1	23	3	25	3	25	0.97
2	16	8.5e-06	0.0005	20.7	4.1	1	23	31	53	31	53	0.99
3	16	2.6e-05	0.0015	19.2	0.1	1	23	59	81	59	81	0.98
4	16	8.2e-06	0.00048	20.8	0.1	2	23	97	119	96	119	0.96
5	16	2.8	1.6e+02	3.3	0.2	3	23	143	165	141	165	0.79
6	16	0.3	18	6.4	0.0	3	23	219	239	218	239	0.97
7	16	0.019	1.1	10.1	0.0	3	23	254	274	253	274	0.94
8	16	0.0013	0.078	13.8	0.3	1	23	282	305	282	305	0.94
9	16	0.032	1.9	9.4	0.1	1	23	310	333	310	333	0.92
10	16	0.012	0.73	10.8	0.1	1	23	387	411	387	412	0.93
11	16	0.001	0.059	14.2	0.0	2	23	472	493	471	493	0.96
12	16	0.058	3.4	8.6	0.0	1	23	501	523	501	523	0.98
13	16	3.1	1.8e+02	3.2	0.8	2	23	531	552	530	553	0.92
14	16	0.87	52	4.9	0.3	1	23	630	652	630	652	0.94
15	16	0.0035	0.21	12.5	0.1	1	20	660	679	660	682	0.95
16	16	0.89	53	4.9	0.5	1	23	689	711	689	711	0.94

Sequence Information

Coding Sequence: ATGCCGTTCCGTTGCGAGTTTTGCTCGCGGCTGTTCAAACACAAGCGGTCGCGGGACCGCCACGTGAAGCTGCACACCGGCGACCGCAAGTACCGCTGCGCGCACTGCGAGTCCGCTTTCTCCAGGAGTGATCACTTGAAGATCCATATGAAGACACACGACAACCAGAAGCCGTTCCAGTGCACAGTGTGCAACCGCGGGTACAACACGGCAGCTGCTCTCACATCCCACATGCAGGGTCACAAGCGGGAGCGGGAAGGCCGCGAGCCCGACCGTAGAAGAGCTCTTCGCTGTTTGAGATGTGGAGAAGCTTTTCGAAGACCTGATCTTTTACAGGCACACATGGCGACGGTGCACGGCGTGGACGCAGCAGCACTGACGCCACCGCGGCGCGTGGCCTCACAGCCGCCACCGACGCTGCTCGCTTGCATGTACTGCACTCGTGACACCTTCACGAGCATGGAGCAGCTGCAACTGCACGTTCGCGCTGCACACTCAGCGCTTCTCAATGGCGAAGGTGCGCTGCCTGGTGTTGACCAGCCCGCGCCTACTGACCTCAGCCGCAGAGCATCCGATGAAATACCACCCCCGAGTAAACGACCGCGTTCCGGCTCCGGGACGCCACAGGTTACTCTGTCTCCGAACACTCTGCTCTGCAATCAATGCGACGCCGCTCTGCCCGACTTCGAAGCGTTCCGAGCCCATTTGAAAGGACATTTAGAAGAGGGTGGCGAGTTAACTCGTACGAGTCCAGCGCCTTGCGTGCACTGCGGTGCCACGTTTGCGGACGCGGCGGCGGCAGAGCGTCACCTAACGGCGCACTACCTAGCCGTCTCTTGCGAGTACTCATGCCACAGCTGCGCGCGCAGCTTCCCCGCGCCCGACGACCTGCAGAAGCACCTCCTGGACTTGCACGCTCATCATCTGTATCGCTGTTCCTTGTGTAAGGAAATCTTCGACTCGAAAGTCGCCATCCAGGTTCATTTCGCGGTGGCACACAGCGGTGAAAATAAAGTGTGGGTGTGCCGTGGTTGCGGCAGTGGCGCGGGCGCTTTACGCTCGGAGGCAGAGGGTGCAGCACACGTGCGTGCGGCGCACGGTGGCGCGCGGTGCGCATGCGGCGCGCTGCTGGGCGGGCCGCGCTTGCGCCCCCGCGCCTACCGCTGCCCCGTGCCCGCGTGTACTGACGCTTTCGCCGTGCAGTACCTGCTCGAGCGACATATGCAGGTCCACCACGCCGTGCCACACCAGGTGTTGAACGGCGAGCTGACCCGACCGAAGCGTGCGGAGAATAACAACGGCACGGAAGCGGAGGGCGCGTGTTCCCCGTGCGGCGGGGAGGGAGCTCCGGCTGGGGGTGCTGGTTCAGGTGGCACAGAGGAGCGCCGGCGCAAGAACGGCTCCGTGGCGCTGCAGTGCGCCTACTGTGGTGAGCGCGCGCGATCACGCGCCGAATTGGAGGCGCACACGCGCGCGCACTCGGGCGCCGCCACCGCCCGACACAAGTGTCTCATCTGCGACGAGGTGCTGCCCTCCGCTGCCGTGCTCGCAGAGCATAAACTTACACACTGCAAGGTGGTGTCGGGCGACACGTGCGCGCGGTGCCGGTCACGGCTGGTGTCCGAGGAGTCATTCTTGGCGCATATGGCGCGGCACCACCCCGCCCTGCCCGCGCCATGCGTCGTCTGCCGCCAGACGCTCGCCTCTGAGCCCGAGGCGCGCCTGCACGCTCGCTTCCATCTGAGACCCGCAGACGATGAACAGAGATGTGCGCTGTGTCTGCGCGCGCTGGGCGAGGGCGAGGGTGCGGGCGCGGGCGGCGGGGCGCGCGCGTGCGCCGCGTGCTACGCGCGCCACGCTGCGCCGCGCGCGCCGCCGCCCGCCGACCACGACTGCCGGCTCTGCCGCCGCGCGCTCGGCTCCCCTACCAGGCTGCAGGCACACCTGATAGAGCACACGTTCGCCGGAATAGGTGCGTTCACTTGCTATTTGTGTTCTGCTGTGTTCACGTCTGCCGCGGGCCTGCAGCGGCACCTGCCGGAGCACGCCGCCGCACCGCGCCCCTACGACTGCGGACGGTGCTCACTCAAGTTCTTCTTCAGAGCGGAACTAGATAACCACGCTTTTGTACATTTGGAAGAAGCGGAGATTGCGCAACGAGCTTTCTATGAGGCGTACGCTCGAGGCGCAGCGACGGCTTGGGCTGCGCTCGCGCCGCCTGAACCTCTCACCGAGCCTCGAACAGATACAGAGGTAAAGCAGGAGATCAAAGAGGAACGAAATGATGAGTATATAGAAGTGGCATCTCCTCCCCCACCTGCGTTGAAAGATCCGCCCGCTGAGGAGGCTCCGGTAGTGAAGCAAGAGAAGCCTGATGAAGATTGA
Protein Sequence: MPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKREREGREPDRRRALRCLRCGEAFRRPDLLQAHMATVHGVDAAALTPPRRVASQPPPTLLACMYCTRDTFTSMEQLQLHVRAAHSALLNGEGALPGVDQPAPTDLSRRASDEIPPPSKRPRSGSGTPQVTLSPNTLLCNQCDAALPDFEAFRAHLKGHLEEGGELTRTSPAPCVHCGATFADAAAAERHLTAHYLAVSCEYSCHSCARSFPAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWVCRGCGSGAGALRSEAEGAAHVRAAHGGARCACGALLGGPRLRPRAYRCPVPACTDAFAVQYLLERHMQVHHAVPHQVLNGELTRPKRAENNNGTEAEGACSPCGGEGAPAGGAGSGGTEERRRKNGSVALQCAYCGERARSRAELEAHTRAHSGAATARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCARCRSRLVSEESFLAHMARHHPALPAPCVVCRQTLASEPEARLHARFHLRPADDEQRCALCLRALGEGEGAGAGGGARACAACYARHAAPRAPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCGRCSLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAATAWAALAPPEPLTEPRTDTEVKQEIKEERNDEYIEVASPPPPALKDPPAEEAPVVKQEKPDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00635642;
90% Identity: iTF_00926852;
80% Identity: -